genome.fa.s5.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  101  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31930053--31930275	25	9.1	25	70	14	142	22	15	26	34	1.94
31930093--31930272	24	7.4	24	70	13	125	22	15	26	35	1.94
31930067--31930275	49	4.3	49	83	3	269	22	15	27	35	1.94
31931557--31931594	16	2.5	15	91	8	67	60	10	13	15	1.59
31931636--31931669	13	2.7	13	95	4	61	41	0	0	58	0.98
31931858--31931924	32	2.0	35	83	13	88	44	1	5	47	1.36
31935591--31935709	22	5.4	22	76	7	116	39	21	22	16	1.92
31935591--31935709	44	2.7	44	84	0	148	39	21	22	16	1.92
31939293--31939362	33	2.1	34	94	5	124	31	14	7	47	1.71
31939504--31939533	14	2.2	13	94	5	51	46	0	6	46	1.29
31941159--31941203	18	2.4	18	81	3	54	53	4	0	42	1.21
31945318--31945364	8	5.3	9	82	7	53	21	2	0	76	0.89
31945318--31945375	19	3.2	19	79	15	70	20	3	0	75	0.94
31945333--31945413	20	4.2	19	73	14	67	25	2	3	67	1.19
31945400--31945459	26	2.2	27	82	5	68	28	10	1	60	1.39
31945455--31945521	17	3.8	17	76	7	53	26	5	1	65	1.24
31947910--31947935	11	2.4	11	100	0	52	53	7	0	38	1.30
31947883--31947965	9	9.2	9	74	20	59	54	2	0	43	1.13
31950828--31950852	13	1.9	13	100	0	50	44	0	8	48	1.32
31960981--31961074	48	1.9	49	86	2	136	21	14	22	41	1.89
31966585--31966630	24	1.9	24	86	0	65	39	2	0	58	1.10
31975487--31975526	19	2.1	19	100	0	80	20	0	35	45	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31980225--31980342	57	2.1	57	87	4	166	25	18	6	49	1.72
31986638--31986900	40	6.6	40	88	3	325	26	27	20	24	1.99
31994624--31994886	40	6.6	40	88	3	325	26	27	20	24	1.99
31997511--31997540	12	2.5	12	94	0	51	23	43	26	6	1.78
31999540--31999594	19	2.8	20	70	25	55	60	0	1	38	1.08
32003380--32003455	38	2.0	39	87	5	111	39	1	3	55	1.27
32006783--32006846	32	2.0	32	100	0	128	21	37	6	34	1.79
32009065--32009197	26	5.3	26	65	13	98	20	27	6	45	1.76
32009061--32009214	50	3.1	50	100	0	308	19	25	5	49	1.70
32009091--32009171	24	3.3	24	67	13	74	20	24	3	50	1.64
32010083--32010128	24	1.9	24	86	0	65	13	41	4	41	1.63
32010151--32010180	14	2.1	14	93	0	51	10	43	10	36	1.72
32010619--32010676	27	2.1	27	100	0	116	34	31	10	24	1.89
32012016--32012058	17	2.7	15	83	13	59	23	11	9	55	1.64
32012969--32012999	15	2.1	15	100	0	62	38	35	0	25	1.56
32013123--32013184	18	3.2	18	66	16	52	56	3	3	37	1.32
32013120--32013193	20	3.7	20	72	13	80	58	2	4	35	1.31
32013306--32013343	14	2.7	14	87	0	58	39	18	7	34	1.80
32024335--32024600	103	2.6	104	91	0	426	19	20	30	29	1.97
32026015--32026069	23	2.3	23	85	14	85	41	0	9	49	1.34
32026024--32026065	13	3.5	13	75	18	54	38	0	11	50	1.40
32027850--32027963	55	2.0	58	86	6	162	12	26	2	58	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32028502--32029245	45	16.8	46	76	11	422	25	23	21	29	1.99
32028596--32029022	134	3.2	134	97	0	782	24	23	22	30	1.99
32028865--32029327	218	2.1	218	92	0	773	26	23	21	28	1.99
32034548--32034744	98	2.0	98	94	0	349	37	25	9	27	1.87
32035017--32035049	15	2.2	15	94	0	57	63	12	0	24	1.28
32035588--32035697	34	3.4	34	65	20	101	7	25	2	64	1.33
32035572--32035695	60	2.0	63	93	4	218	10	26	4	58	1.49
32035591--32035716	60	2.1	61	82	4	148	10	23	6	60	1.52
32039959--32040039	25	3.2	25	84	6	101	33	20	20	24	1.97
32039951--32040063	50	2.3	50	82	0	136	32	20	20	26	1.97
32045776--32045808	16	2.1	16	100	0	66	24	6	21	48	1.72
32045915--32045982	34	2.0	34	94	5	120	26	4	30	38	1.76
32048782--32048851	31	2.3	31	76	0	77	47	8	1	42	1.43
32051073--32051106	14	2.5	14	95	4	61	50	35	0	14	1.44
32053540--32053577	20	1.9	20	94	0	67	65	18	0	15	1.27
32057158--32057204	18	2.6	18	89	0	67	29	23	27	19	1.98
32057153--32057213	18	3.3	18	79	6	52	34	24	22	18	1.96
32059471--32059508	18	2.2	18	90	9	62	71	2	5	21	1.19
32059566--32059707	73	1.9	73	94	0	248	34	16	7	41	1.77
32065999--32066169	85	2.0	85	95	0	306	37	20	8	33	1.82
32068055--32068103	25	1.9	25	84	12	64	59	8	4	28	1.45
32073461--32073596	41	3.5	40	77	9	154	33	25	16	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32074474--32074534	4	13.8	4	74	19	50	3	21	6	68	1.27
32074532--32074613	36	2.3	34	85	6	101	43	4	2	48	1.37
32082406--32082529	43	2.9	43	83	1	149	27	19	21	31	1.97
32088115--32088192	31	2.5	31	85	0	93	32	7	16	43	1.76
32088313--32088565	43	5.9	43	88	0	362	27	15	24	32	1.95
32097379--32097421	21	2.0	21	90	0	68	39	27	4	27	1.76
32098438--32098477	2	20.0	2	100	0	80	50	0	50	0	1.00
32099049--32099081	6	5.5	6	100	0	66	15	0	48	36	1.45
32127052--32127133	42	2.0	42	87	4	121	50	10	3	35	1.55
32127285--32127321	10	3.6	10	88	3	56	0	29	0	70	0.88
32128120--32128171	21	2.5	21	87	0	77	25	7	36	30	1.84
32131850--32132038	94	2.0	92	82	2	225	35	9	22	32	1.86
32133350--32133393	21	2.1	21	95	0	79	9	13	31	45	1.75
32134134--32134198	30	2.2	30	88	0	94	26	32	3	38	1.72
32135433--32135719	150	1.9	150	89	1	450	31	20	19	29	1.97
32136525--32136572	25	1.9	25	87	8	71	37	0	4	58	1.18
32139556--32139825	125	2.2	126	88	2	391	31	18	14	34	1.92
32139961--32140033	21	3.5	21	69	14	69	47	23	0	28	1.52
32143388--32143439	21	2.5	22	81	12	56	32	1	17	48	1.58
32146415--32146545	57	2.3	57	84	2	156	41	4	19	34	1.72
32147962--32148011	21	2.4	21	78	15	68	40	10	2	48	1.48
32148127--32148214	41	2.1	41	83	4	106	32	23	17	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32155354--32155403	21	2.4	21	78	15	68	40	10	2	48	1.48
32155489--32155608	41	2.9	40	85	2	141	30	23	18	28	1.98
32158705--32158775	30	2.4	30	87	0	106	50	15	5	28	1.66
32171122--32171163	18	2.2	20	91	8	70	52	7	0	40	1.29
32173137--32173164	14	2.0	14	100	0	56	50	0	35	14	1.43
32175753--32175789	5	7.2	5	93	6	65	18	2	0	78	0.87
32175756--32175786	16	1.9	16	100	0	62	19	3	0	77	0.90
32176882--32176921	15	2.7	15	84	0	53	37	5	2	55	1.35
32182065--32182123	6	9.3	6	85	10	73	83	0	3	13	0.78
32182065--32182120	20	2.8	20	86	2	78	83	0	3	12	0.76
32183077--32183175	45	2.2	44	78	8	112	31	13	24	31	1.93
32183189--32183985	44	17.7	43	72	13	399	31	19	20	27	1.97
32183126--32183670	139	4.0	138	79	6	488	32	18	20	28	1.96
32183191--32184142	317	3.0	315	86	5	1228	32	20	20	26	1.97
32184063--32184164	44	2.3	44	93	0	177	31	27	20	20	1.98
32183746--32184164	185	2.3	176	77	5	419	31	21	21	25	1.98
32183884--32184143	141	1.8	141	81	4	319	30	20	23	25	1.98
32185311--32185340	14	2.1	14	93	0	51	40	6	3	50	1.45
32185936--32186044	41	2.7	41	85	2	148	26	27	19	26	1.99
32188912--32188951	15	2.7	15	84	0	53	37	5	2	55	1.35
32196239--32196264	4	6.5	4	100	0	52	73	0	0	26	0.84
32196284--32196315	15	2.1	15	100	0	64	18	6	6	68	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32204979--32205040	31	2.0	31	87	6	90	38	4	12	43	1.64
32207694--32208181	161	3.0	164	88	3	750	26	17	17	39	1.91
32208207--32208235	5	6.0	5	92	8	51	41	0	0	58	0.98
32210282--32210351	31	2.2	32	89	2	106	38	8	8	44	1.66
32220800--32220883	41	2.0	41	97	0	159	33	4	21	40	1.74
32222238--32222305	26	2.6	26	90	2	100	61	4	1	32	1.24
32231302--32231497	50	3.8	50	78	8	155	30	19	26	23	1.98
32231357--32231496	50	2.8	50	83	0	163	30	22	26	20	1.98
32232462--32232929	124	3.8	124	96	0	801	28	15	21	34	1.94
32234067--32234119	25	2.1	25	92	0	88	24	13	39	22	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185