genome.fa.s5.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  132  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40452173--40453010	100	8.5	99	87	3	962	31	21	20	26	1.98
40453356--40453405	15	3.3	15	82	2	55	48	44	6	2	1.39
40453341--40453403	25	2.5	26	81	2	74	47	46	4	1	1.33
40456086--40456153	20	3.4	20	72	8	75	29	26	14	29	1.95
40456073--40456160	40	2.2	40	100	0	176	27	27	15	29	1.96
40456102--40456165	20	3.2	20	67	6	58	25	26	18	29	1.98
40459294--40459644	181	2.0	174	85	5	470	29	18	13	38	1.89
40461675--40461713	21	1.9	20	89	5	60	41	28	17	12	1.87
40476577--40478970	920	2.6	926	95	0	4269	32	22	15	29	1.94
40486467--40486746	41	6.8	41	90	5	381	28	24	20	27	1.99
40487070--40487099	2	15.0	2	92	0	51	50	3	0	46	1.18
40496227--40496517	144	2.0	143	94	0	510	20	14	10	54	1.69
40498402--40498777	187	2.0	188	96	0	691	31	11	16	40	1.83
40499678--40499735	22	2.6	22	91	0	98	36	22	18	22	1.95
40500122--40500150	14	2.0	15	93	6	51	51	27	0	20	1.47
40500303--40500348	23	2.0	23	91	0	74	8	47	23	19	1.77
40503649--40503702	19	2.8	20	83	5	67	35	5	18	40	1.74
40508309--40508344	18	2.0	18	100	0	72	16	11	38	33	1.84
40509905--40510018	21	5.5	21	73	1	95	48	15	18	17	1.82
40509926--40510075	42	3.6	42	80	3	151	46	14	20	19	1.84
40513220--40513267	17	2.8	18	84	9	73	31	14	4	50	1.62
40513220--40513268	18	2.8	17	87	6	62	32	14	4	48	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40522929--40522983	30	1.9	28	82	17	69	54	0	1	43	1.10
40524279--40524316	14	2.6	15	83	4	51	52	0	0	47	1.00
40526605--40526629	12	2.1	12	100	0	50	44	0	8	48	1.32
40530720--40530745	3	8.7	3	100	0	52	69	0	0	30	0.89
40540992--40541070	21	3.8	21	72	20	67	46	1	1	50	1.17
40541240--40541311	26	2.7	26	78	4	72	44	25	4	26	1.72
40553227--40553253	12	2.2	12	100	0	54	77	0	7	14	0.97
40553621--40553667	3	15.7	3	95	0	85	65	2	0	31	1.04
40554929--40555281	39	8.5	39	68	13	177	26	22	21	29	1.99
40554917--40555116	82	2.4	82	96	0	364	25	23	22	28	1.99
40554919--40555161	43	5.8	44	71	9	177	25	23	22	28	1.99
40555077--40555374	44	6.8	45	73	11	205	25	21	21	31	1.98
40564390--40564469	39	2.1	39	95	0	142	18	32	21	27	1.97
40569185--40569227	3	14.3	3	90	0	68	65	2	2	30	1.18
40574437--40574480	19	2.3	19	88	0	61	63	0	2	34	1.07
40576137--40576162	1	26.0	1	100	0	52	0	0	0	100	0.00
40590944--40590978	17	2.1	17	88	0	52	42	2	0	54	1.15
40592681--40592728	22	2.2	22	85	7	62	35	10	4	50	1.56
40594815--40594855	20	2.0	21	85	4	57	65	4	2	26	1.25
40596482--40596614	66	2.0	66	82	5	162	36	18	9	34	1.84
40607643--40607707	32	2.1	31	94	5	114	41	9	6	43	1.61
40611045--40611188	34	4.5	32	76	13	93	41	0	11	47	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40611056--40611183	34	3.8	33	76	11	118	41	0	12	46	1.42
40611274--40611921	126	5.2	126	86	1	852	38	16	16	29	1.90
40611274--40611921	251	2.6	251	85	1	897	38	16	16	29	1.90
40617698--40617728	16	1.9	16	93	0	53	25	9	0	64	1.24
40619645--40619691	24	1.9	24	83	12	60	44	0	4	51	1.21
40625418--40625470	16	3.4	16	71	10	56	66	3	5	24	1.31
40628515--40628652	38	3.4	39	77	15	154	31	18	15	34	1.92
40628472--40628652	84	2.2	83	90	2	283	29	20	16	33	1.94
40628470--40628667	46	4.5	46	85	11	274	29	20	16	33	1.94
40630169--40630198	13	2.3	13	94	0	51	66	0	3	30	1.07
40630636--40630666	16	1.9	16	93	0	53	61	0	3	35	1.12
40645248--40645411	84	2.0	84	96	0	301	45	12	20	21	1.83
40648487--40648524	16	2.4	16	86	8	51	18	2	5	73	1.14
40650701--40650746	24	1.9	24	90	0	74	41	19	19	19	1.91
40650926--40650980	24	2.3	23	81	3	65	36	14	21	27	1.93
40654666--40654986	161	2.0	161	98	0	624	27	20	14	37	1.92
40655984--40656155	46	3.7	46	79	13	208	29	29	20	20	1.98
40655991--40656162	93	1.8	93	94	0	308	27	29	21	21	1.99
40656881--40657023	71	2.0	71	90	2	225	34	18	16	30	1.93
40657676--40657760	44	1.9	44	87	0	125	32	28	17	21	1.96
40658498--40658522	12	2.1	12	100	0	50	36	16	0	48	1.46
40661154--40661302	45	3.3	45	94	0	262	34	14	10	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40664502--40664933	49	8.7	49	83	3	549	29	26	19	25	1.98
40664488--40664933	100	4.5	98	89	2	568	29	26	19	25	1.98
40666514--40666647	70	1.9	73	80	7	159	50	8	8	32	1.63
40666848--40666918	22	3.2	23	75	16	69	57	2	1	38	1.22
40667097--40667135	17	2.3	17	86	0	51	64	2	5	28	1.28
40668866--40668909	21	2.1	21	82	0	52	22	29	13	34	1.93
40669066--40669851	87	9.0	85	73	12	530	37	18	16	27	1.92
40669329--40669483	72	2.1	74	86	5	217	32	21	18	27	1.97
40669054--40669938	430	2.1	423	84	5	1174	37	18	16	27	1.92
40669907--40669939	15	2.3	15	94	5	59	66	6	12	15	1.42
40669907--40669951	16	2.9	16	87	9	58	64	4	13	17	1.44
40670792--40670899	43	2.5	43	82	8	123	14	25	15	44	1.85
40682683--40682744	22	2.9	22	81	15	60	58	6	3	32	1.40
40688733--40688843	30	3.8	29	78	11	102	18	0	18	62	1.39
40692976--40693000	12	2.1	12	100	0	50	40	24	20	16	1.91
40704434--40704478	20	2.2	21	81	18	60	35	0	8	55	1.31
40704434--40704483	19	2.5	20	84	15	61	32	0	8	60	1.26
40709658--40709702	17	2.6	17	89	0	63	24	8	33	33	1.86
40724433--40724579	73	2.0	73	85	0	195	37	6	14	41	1.71
40727513--40727604	25	3.7	25	69	11	62	17	29	18	34	1.94
40729724--40729868	42	3.4	42	83	3	184	31	13	25	29	1.93
40743634--40743725	40	2.3	40	82	0	121	32	20	3	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40743695--40743742	13	3.7	13	80	5	53	43	20	2	33	1.64
40743688--40743749	26	2.3	27	83	10	83	37	19	1	41	1.61
40745087--40745139	18	2.9	18	80	2	61	41	45	1	11	1.51
40745243--40745309	18	3.7	18	89	0	107	23	8	25	41	1.83
40745243--40745309	9	7.4	9	81	0	80	23	8	25	41	1.83
40758663--40758765	44	2.3	45	84	3	127	30	21	13	34	1.92
40758685--40758770	46	1.9	44	90	4	136	29	24	13	32	1.94
40761132--40761210	32	2.5	32	84	10	108	31	20	17	30	1.96
40770342--40770382	21	2.0	21	90	0	64	29	21	29	19	1.98
40774222--40774299	38	2.1	38	100	0	156	61	2	5	30	1.31
40780247--40780282	17	2.1	18	89	5	56	11	41	33	13	1.80
40780505--40780553	24	2.0	24	100	0	98	12	30	4	53	1.57
40812509--40812551	18	2.4	18	100	0	86	37	18	4	39	1.72
40821172--40821238	34	1.9	34	84	6	89	56	4	1	37	1.29
40824534--40824566	2	16.5	2	100	0	66	0	51	0	48	1.00
40827607--40827632	3	8.7	3	100	0	52	30	0	0	69	0.89
40831059--40831196	41	3.4	40	87	4	195	24	26	18	30	1.98
40834668--40834776	57	1.9	58	84	5	150	30	12	22	33	1.92
40834668--40834799	57	2.3	57	81	10	144	29	12	21	35	1.91
40835006--40835506	69	7.3	69	79	1	439	18	20	26	34	1.96
40835006--40835499	138	3.6	138	79	1	506	18	20	26	34	1.95
40835022--40835506	207	2.3	207	80	2	535	18	20	26	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40836418--40836474	21	2.7	20	76	10	51	61	5	3	29	1.35
40837379--40837408	5	6.0	5	96	0	51	23	0	20	56	1.42
40853152--40853277	42	3.0	42	83	2	164	24	10	20	44	1.83
40855765--40855808	24	1.9	24	81	9	56	29	2	9	59	1.41
40856293--40856341	25	1.9	26	84	12	66	30	4	20	44	1.70
40859106--40859151	24	2.0	22	84	12	58	36	10	28	23	1.89
40859111--40859158	24	2.0	24	87	0	69	45	10	22	20	1.81
40859254--40859377	42	2.9	43	86	2	162	16	20	18	44	1.87
40859249--40859356	21	5.1	21	67	4	65	15	23	17	43	1.87
40865999--40866146	57	2.5	60	83	9	196	22	25	21	30	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185