genome.fa.s4.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  101  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31540106--31540294	27	7.0	27	87	0	243	25	20	18	34	1.96
31540311--31540552	27	9.0	27	80	6	258	42	10	20	27	1.84
31540310--31540552	54	4.5	55	84	5	307	42	10	20	27	1.84
31540308--31540553	81	3.0	80	83	4	314	42	10	19	27	1.84
31540311--31540584	81	3.4	80	82	3	307	40	10	21	27	1.85
31541949--31541998	25	2.0	25	92	0	82	34	16	10	40	1.81
31543297--31543365	7	9.3	7	83	9	75	14	0	34	50	1.43
31543297--31543365	8	9.2	8	87	9	94	14	0	34	50	1.43
31544020--31544069	25	2.0	25	92	0	82	34	16	10	40	1.81
31549781--31549817	18	2.0	19	89	5	58	56	0	0	43	0.99
31549781--31549830	17	2.9	17	81	16	59	60	0	0	40	0.97
31550701--31550757	29	2.0	29	82	0	69	42	12	10	35	1.77
31554999--31555259	39	6.7	39	84	6	300	23	20	27	27	1.99
31563276--31563439	79	2.1	78	86	3	222	25	19	27	28	1.99
31563276--31563439	39	4.2	40	84	1	208	25	19	27	28	1.99
31569494--31569572	37	2.1	37	88	4	115	25	30	18	25	1.98
31569691--31570483	47	16.4	47	89	5	1172	29	29	8	32	1.87
31569834--31569871	16	2.4	16	95	0	67	34	26	5	34	1.79
31569787--31569920	63	2.1	63	92	0	232	31	27	7	33	1.85
31569742--31569956	110	2.0	110	96	0	394	30	28	8	32	1.87
31573051--31573096	18	2.4	18	82	7	56	30	4	2	63	1.26
31574609--31574653	18	2.5	18	96	0	81	24	28	6	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31581016--31581147	26	5.2	26	61	20	73	33	26	14	25	1.94
31581015--31581300	50	5.7	50	80	4	288	34	26	14	25	1.94
31581021--31581300	151	1.8	153	89	1	438	34	26	14	25	1.94
31588474--31588533	30	2.0	30	86	0	84	28	23	8	40	1.83
31592893--31593023	65	2.0	65	93	0	226	26	15	16	41	1.87
31596542--31596586	24	1.9	23	82	13	56	31	20	8	40	1.83
31599148--31599207	30	2.0	30	87	6	86	28	25	6	40	1.80
31602614--31602837	40	5.6	40	83	3	281	25	20	27	26	1.99
31604218--31604402	79	2.3	81	82	7	227	25	27	22	24	2.00
31604218--31604402	40	4.6	41	78	10	204	25	27	22	24	2.00
31612183--31612367	79	2.3	82	84	7	238	25	26	22	25	2.00
31612183--31612367	40	4.6	41	79	10	213	25	26	22	25	2.00
31617609--31617698	45	2.0	45	95	0	162	35	21	7	35	1.82
31622597--31622675	20	4.0	20	73	6	70	20	25	21	32	1.97
31622477--31622659	40	4.6	40	78	5	172	22	27	18	32	1.97
31622477--31622658	80	2.3	80	78	5	190	22	26	18	32	1.97
31623673--31623770	27	3.6	26	77	13	72	32	8	18	40	1.80
31623736--31623886	27	5.6	26	84	4	176	28	5	21	43	1.76
31623653--31623886	54	4.3	54	79	4	236	30	7	20	41	1.80
31623737--31623886	81	1.9	81	84	5	205	28	6	21	44	1.76
31623653--31623916	54	4.8	53	76	7	208	30	8	19	41	1.81
31623763--31623919	81	1.9	81	82	5	192	30	8	19	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31623908--31624115	27	7.7	26	80	8	195	40	8	23	27	1.82
31623906--31624115	80	2.6	78	82	8	215	40	8	22	27	1.83
31627082--31627210	46	2.8	46	93	0	213	30	27	21	20	1.98
31629604--31629644	15	2.7	15	79	20	50	63	9	14	12	1.52
31632587--31632755	93	1.8	93	90	0	275	28	28	20	21	1.98
31632579--31632754	46	3.8	46	78	4	192	29	28	19	21	1.98
31644757--31644805	16	3.1	16	72	0	53	46	16	22	14	1.82
31646940--31646991	24	2.2	24	86	6	70	17	25	23	34	1.96
31658297--31658366	28	2.5	28	84	9	90	27	12	27	32	1.93
31670378--31670560	50	3.7	49	78	7	190	26	18	26	28	1.98
31677596--31677827	56	4.1	56	92	0	383	28	15	24	32	1.95
31677596--31677858	112	2.3	112	89	2	386	28	15	24	32	1.95
31677596--31677858	56	4.7	57	89	1	349	28	15	24	32	1.95
31680278--31680386	37	2.9	37	94	0	182	26	30	19	23	1.98
31680533--31680716	98	1.9	96	88	6	282	30	25	8	36	1.85
31680533--31680717	48	3.8	48	88	4	273	30	24	8	36	1.85
31680735--31680808	22	3.2	22	64	23	53	25	32	13	28	1.94
31680690--31680880	47	4.1	47	86	0	211	27	29	10	31	1.90
31680690--31680880	94	2.0	94	84	0	247	27	29	10	31	1.90
31685026--31685377	40	8.8	40	90	0	542	25	26	22	26	2.00
31685217--31685283	23	3.2	23	60	24	56	23	25	23	26	2.00
31686646--31686754	37	2.9	37	94	0	182	27	31	18	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31686901--31687091	48	3.8	48	85	8	240	31	25	6	36	1.82
31687064--31687254	47	4.1	47	88	0	265	27	29	10	32	1.90
31689851--31690256	47	8.6	47	90	2	614	33	8	29	29	1.86
31689851--31690256	96	4.3	96	92	2	671	33	8	29	29	1.86
31689851--31690256	143	2.9	143	89	4	633	33	8	29	29	1.86
31693906--31694011	28	3.7	27	73	23	74	26	26	16	30	1.97
31693911--31694047	60	2.3	60	82	6	152	27	24	17	30	1.97
31695533--31695589	18	3.2	18	75	7	62	64	0	31	3	1.10
31709468--31709583	28	4.3	27	78	9	119	37	20	23	18	1.94
31711498--31711534	12	3.1	12	92	0	56	70	8	0	21	1.13
31724893--31724932	20	2.0	20	85	14	55	50	22	0	27	1.50
31729283--31729426	49	2.9	49	84	4	191	27	27	20	25	1.99
31729287--31729426	51	2.8	49	83	4	174	27	27	20	24	1.99
31733253--31733429	48	3.7	48	78	6	178	24	30	18	25	1.98
31737175--31737271	28	3.4	28	82	10	126	27	15	31	24	1.95
31744452--31744714	40	6.6	40	90	1	393	22	20	26	30	1.98
31750150--31750192	16	2.7	16	81	0	50	51	18	18	11	1.76
31750416--31750518	29	3.6	29	78	5	102	29	14	30	26	1.95
31753758--31753812	25	2.1	28	83	10	71	45	18	0	36	1.49
31756134--31756160	12	2.2	12	100	0	54	33	22	18	25	1.97
31757399--31757605	53	3.8	52	75	8	184	38	18	23	19	1.93
31761773--31761948	46	3.8	46	79	12	216	20	21	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31761770--31761941	93	1.8	93	96	0	317	20	21	29	27	1.98
31769343--31769518	46	3.8	46	79	12	216	20	21	29	28	1.98
31769340--31769511	93	1.8	93	96	0	317	20	21	29	27	1.98
31774385--31774484	27	3.7	27	75	2	76	39	16	7	38	1.75
31775780--31775951	46	3.7	45	79	15	199	22	19	29	29	1.98
31775774--31775945	93	1.8	93	91	2	283	22	20	28	29	1.98
31778745--31778797	23	2.4	22	76	20	56	9	18	1	69	1.25
31782485--31782556	27	2.7	27	80	0	99	43	16	9	30	1.80
31782485--31782571	27	3.2	26	77	6	86	41	14	11	32	1.82
31782985--31783086	32	3.2	31	77	2	96	28	19	20	31	1.97
31783850--31783888	19	2.1	19	100	0	78	43	15	5	35	1.69
31785455--31785577	61	2.0	61	96	0	228	30	2	23	43	1.67
31795378--31795571	57	3.4	56	84	2	235	29	13	24	32	1.93
31798953--31799020	26	2.6	26	79	9	84	26	16	23	33	1.95
31802921--31802984	31	2.1	31	84	0	83	25	20	15	39	1.92
31803198--31803315	23	5.1	23	90	3	184	31	21	19	27	1.97
31803198--31803315	45	2.6	46	91	2	184	31	21	19	27	1.97
31803366--31803432	20	3.3	20	91	0	107	32	22	11	32	1.90
31811299--31811354	20	3.1	18	87	10	62	32	21	12	33	1.91
31823517--31823589	37	2.0	37	94	0	128	34	20	12	32	1.90
31825734--31825957	39	5.7	40	85	7	255	24	22	28	24	2.00
31825787--31825990	79	2.6	79	83	5	209	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31834013--31834181	38	4.3	39	87	4	218	24	21	28	24	1.99
31833961--31834181	40	5.7	40	84	7	242	24	22	28	24	2.00
31834013--31834213	78	2.6	78	80	7	180	26	21	27	24	1.99
31843207--31843307	29	3.5	29	85	5	125	25	28	14	30	1.95
31843237--31843326	29	3.1	29	86	0	117	27	28	14	28	1.95
31848017--31848199	66	2.8	66	92	2	298	33	14	29	22	1.94
31853623--31853671	16	2.9	16	85	11	55	57	8	0	34	1.29
31855092--31855275	41	4.5	41	86	3	246	36	23	20	19	1.95
31856172--31856219	24	2.0	25	83	4	62	43	14	0	41	1.45
31863284--31863513	49	4.7	47	76	8	183	25	16	26	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255