genome.fa.s4.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  174  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57303083--57303109	2	13.5	2	100	0	54	0	48	0	51	1.00
57306842--57306913	37	1.9	37	83	5	92	27	4	26	41	1.74
57308781--57308828	23	2.0	25	84	8	64	41	6	4	47	1.48
57309082--57309154	30	2.4	32	79	11	89	61	1	0	36	1.05
57309275--57309299	10	2.5	10	100	0	50	72	0	0	28	0.86
57309754--57309784	2	15.5	2	100	0	62	51	48	0	0	1.00
57313951--57314001	22	2.3	22	80	6	59	52	0	3	43	1.19
57318444--57318528	26	3.2	26	80	8	100	17	11	29	41	1.85
57324483--57324573	45	2.0	45	91	0	146	26	12	27	34	1.92
57324493--57324597	45	2.3	43	80	12	131	20	13	29	36	1.91
57324613--57324720	52	2.1	52	82	3	128	22	14	26	36	1.93
57347065--57347242	27	6.6	26	82	6	178	26	15	28	29	1.96
57347066--57347221	82	1.9	81	86	3	224	26	16	28	28	1.97
57347062--57347242	82	2.2	81	82	2	220	27	16	27	29	1.97
57347147--57347253	27	3.9	27	85	1	70	26	14	28	30	1.95
57353965--57354016	20	2.5	20	84	3	68	53	5	9	30	1.57
57360653--57360699	23	2.0	23	83	0	58	23	31	8	36	1.85
57362219--57362253	15	2.4	15	90	4	54	20	20	2	57	1.54
57362329--57362737	45	8.7	48	74	14	268	24	29	18	28	1.98
57363076--57363132	30	1.9	30	92	0	96	31	28	8	31	1.87
57368671--57368713	19	2.3	20	80	15	56	72	2	16	9	1.21
57373750--57373785	17	2.1	17	94	0	63	25	13	19	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57377733--57377908	46	3.8	46	77	14	200	21	20	28	29	1.98
57377730--57377901	93	1.8	93	93	2	301	21	20	29	28	1.98
57385307--57385482	46	3.8	46	79	14	209	20	20	29	29	1.98
57385304--57385475	93	1.8	93	95	2	310	20	20	29	28	1.98
57397346--57397389	21	2.1	21	100	0	88	43	0	0	56	0.99
57398520--57398650	48	2.7	48	84	2	174	19	17	28	35	1.94
57403276--57403313	17	2.2	17	100	0	76	63	10	5	21	1.46
57403869--57403978	26	4.2	26	97	0	184	33	5	24	36	1.79
57405431--57405494	26	2.4	26	81	5	74	29	25	15	29	1.96
57405598--57405711	27	4.2	27	85	3	131	16	23	22	36	1.94
57405596--57405711	54	2.1	54	88	3	171	16	23	23	37	1.94
57409411--57409520	26	4.2	26	95	0	175	34	6	23	35	1.80
57410962--57411037	26	2.8	26	88	4	98	34	22	13	30	1.92
57411140--57411252	27	4.2	27	85	3	129	16	23	23	36	1.94
57411138--57411252	54	2.1	54	88	3	169	16	23	23	36	1.94
57414797--57414821	9	2.8	9	100	0	50	52	24	12	12	1.72
57434182--57434277	12	8.4	12	72	17	55	54	3	2	40	1.28
57434184--57434236	20	2.8	19	79	20	67	54	1	1	41	1.22
57437219--57437338	55	2.2	55	89	5	181	28	18	5	47	1.71
57437219--57437352	55	2.4	55	87	4	173	30	16	7	45	1.75
57442396--57442435	19	2.0	20	95	4	73	35	5	10	50	1.58
57444682--57444722	21	2.0	20	85	4	55	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57447911--57447950	18	2.1	18	86	9	53	50	5	2	42	1.37
57447908--57447954	20	2.3	21	75	20	55	51	4	2	42	1.33
57457639--57457790	27	5.6	27	92	3	232	26	13	28	30	1.94
57457639--57457790	55	2.8	55	92	2	243	26	13	28	30	1.94
57464783--57464846	27	2.3	28	89	2	94	25	10	31	32	1.90
57464804--57464859	27	2.1	27	83	6	69	30	12	25	32	1.92
57466802--57466873	29	2.5	29	95	0	126	22	23	27	26	1.99
57478468--57478742	96	2.9	95	83	2	327	28	20	25	25	1.99
57478468--57478747	48	5.9	47	72	9	183	28	20	25	25	1.99
57481391--57481564	49	3.6	48	75	8	165	27	22	27	23	2.00
57485857--57485972	43	2.7	43	78	0	124	32	27	13	25	1.94
57487727--57488058	138	2.4	138	87	1	441	36	20	19	23	1.95
57487727--57488058	69	4.8	69	86	0	396	36	20	19	23	1.95
57502357--57502392	18	1.9	19	94	5	65	19	0	2	77	0.88
57506282--57506605	162	2.0	162	93	0	549	42	21	12	23	1.87
57510180--57510220	22	1.9	22	85	5	57	41	7	7	43	1.60
57510825--57510867	20	2.2	20	87	8	61	55	2	2	39	1.25
57510859--57510895	19	2.0	19	89	5	58	45	0	2	51	1.15
57517964--57517995	5	6.6	5	92	7	57	81	0	0	18	0.70
57518675--57518791	51	2.3	51	89	0	171	24	22	17	35	1.96
57523291--57523463	46	3.7	46	75	13	192	22	21	27	28	1.99
57523288--57523458	93	1.8	93	93	0	297	22	22	28	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57530876--57531048	46	3.8	45	77	13	199	21	21	27	28	1.99
57530873--57531043	93	1.8	93	93	0	297	21	22	28	27	1.99
57548070--57548133	27	2.4	27	94	0	110	46	6	0	46	1.27
57548084--57548143	13	4.6	13	80	13	70	45	8	0	46	1.33
57551991--57552015	6	4.2	6	100	0	50	20	0	0	80	0.72
57554124--57554231	54	2.0	54	98	0	207	35	23	9	32	1.86
57557555--57557592	19	2.0	19	89	0	58	47	2	10	39	1.52
57560199--57560632	48	9.0	48	94	0	733	31	26	5	35	1.81
57564894--57565116	40	5.6	40	85	3	236	26	27	21	24	1.99
57565048--57565125	40	1.9	41	82	10	97	26	28	21	23	1.99
57567415--57567455	5	8.2	5	100	0	82	80	0	0	19	0.71
57570825--57570849	12	2.1	12	100	0	50	60	0	24	16	1.36
57573141--57573211	24	3.0	24	93	0	115	36	1	36	25	1.65
57574629--57574739	27	4.1	27	80	5	118	16	23	21	38	1.92
57574629--57574739	54	2.1	53	84	1	141	16	23	21	38	1.92
57578204--57578316	56	2.0	56	94	0	199	35	28	6	30	1.82
57579884--57579945	6	10.2	6	77	10	63	77	4	4	12	1.09
57579881--57579945	25	2.7	23	75	17	60	76	4	4	13	1.10
57591656--57591701	24	1.9	24	90	0	74	43	21	10	23	1.84
57593136--57593277	41	3.4	43	76	6	139	26	28	20	23	1.99
57593509--57593592	42	2.0	42	97	0	159	40	20	16	22	1.91
57595934--57596195	46	5.6	46	73	11	151	28	17	29	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57595979--57596195	93	2.3	93	79	6	224	28	16	29	24	1.97
57595936--57596203	140	1.9	141	81	6	321	28	17	29	24	1.98
57606280--57606389	27	4.1	27	84	5	134	37	23	21	17	1.94
57606280--57606389	54	2.1	53	85	1	148	37	23	21	17	1.94
57607565--57607596	16	2.0	16	93	0	55	53	6	34	6	1.51
57608385--57608568	38	4.8	38	88	1	242	19	19	26	34	1.96
57611949--57612021	38	1.9	38	94	0	128	32	27	5	34	1.80
57615800--57615837	14	2.7	14	91	0	58	36	7	18	36	1.80
57615821--57615866	19	2.3	20	92	3	76	21	10	19	47	1.80
57615942--57615986	20	2.4	19	85	7	56	46	4	0	48	1.22
57615947--57615986	20	2.0	20	90	0	62	50	2	0	47	1.14
57618444--57618664	40	5.6	40	81	8	213	24	21	27	26	1.99
57618444--57618664	80	2.8	79	83	8	261	24	21	27	26	1.99
57628173--57628287	45	2.6	45	83	5	144	43	13	13	28	1.83
57628173--57628331	45	3.5	44	79	5	140	40	15	16	27	1.88
57630630--57630677	21	2.3	21	92	0	78	41	16	2	39	1.60
57633624--57633695	36	2.0	36	94	0	126	38	6	19	34	1.79
57635000--57635106	53	2.0	53	100	0	214	26	16	25	31	1.97
57658840--57659054	46	4.6	45	75	10	184	24	28	19	27	1.98
57658884--57659057	94	1.9	92	83	7	226	23	27	20	28	1.99
57663577--57663687	43	2.6	43	97	0	204	31	34	24	9	1.88
57663680--57663919	38	6.3	38	84	1	300	28	24	23	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57663679--57663899	116	1.9	116	90	0	352	28	25	23	22	1.99
57668261--57668467	53	3.8	54	78	1	200	20	23	17	38	1.93
57670262--57670322	30	2.0	30	96	0	113	22	21	13	42	1.87
57673311--57673422	27	4.2	26	85	10	136	36	23	24	16	1.94
57673311--57673422	54	2.1	54	86	6	156	36	23	24	16	1.94
57675315--57675447	49	2.7	50	79	5	155	26	29	18	25	1.98
57685229--57685374	40	3.7	40	92	2	215	23	20	26	29	1.99
57685228--57685411	40	4.6	40	87	5	214	24	20	27	27	1.99
57693400--57693689	40	7.3	40	89	4	329	23	21	26	28	1.99
57709724--57709772	25	2.0	25	83	0	62	32	18	14	34	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255