genome.fa.s4.2.7.7.80.10.50.1000.206.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  206  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68922242--68922302	31	2.0	30	90	3	95	54	11	1	32	1.46
68922465--68922491	10	2.7	10	100	0	54	74	0	14	11	1.08
68922719--68922751	11	2.8	12	86	9	50	9	12	0	78	0.95
68924624--68924662	17	2.4	17	86	4	53	51	2	0	46	1.14
68925161--68925185	12	2.1	12	100	0	50	60	0	24	16	1.36
68925416--68925461	22	2.1	21	84	4	56	23	13	0	63	1.30
68925413--68925461	21	2.3	20	76	10	53	28	12	0	59	1.34
68928441--68928482	22	1.9	22	90	0	66	16	4	4	73	1.17
68928440--68928494	22	2.5	22	81	3	65	16	5	5	72	1.22
68937213--68937262	10	5.0	10	86	13	68	20	8	2	70	1.23
68942401--68942558	3	52.7	3	69	16	71	63	2	6	27	1.32
68942401--68942490	27	3.4	28	75	7	80	67	2	5	24	1.23
68942804--68942886	3	28.3	3	78	11	66	61	3	3	31	1.30
68943492--68943542	14	3.6	14	80	14	52	78	0	13	7	0.96
68944262--68944312	8	5.9	8	75	24	50	25	1	0	72	0.95
68946274--68946323	10	5.0	10	80	9	66	22	10	2	66	1.32
68949717--68949746	15	2.0	15	100	0	60	33	13	20	33	1.91
68950807--68950893	29	3.0	30	80	6	101	34	22	14	27	1.94
68950904--68951075	29	5.8	29	74	2	146	43	16	13	26	1.86
68950860--68951056	58	3.3	58	80	4	232	43	16	12	28	1.84
68953446--68953614	43	3.9	44	74	7	150	29	13	23	34	1.92
68957164--68957223	27	2.3	26	85	2	75	35	20	23	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68957964--68958055	27	3.4	27	83	0	112	25	21	20	32	1.98
68965456--68965546	27	3.4	26	83	6	110	25	23	16	35	1.95
68966376--68966453	41	1.9	41	89	0	120	39	14	15	30	1.87
68970860--68970926	34	1.9	35	90	3	109	34	10	11	43	1.76
68972271--68972340	27	2.6	27	80	8	79	50	21	2	25	1.63
68976597--68976627	6	5.2	6	92	0	53	70	16	12	0	1.16
68977078--68977110	6	5.5	6	96	0	57	18	15	3	63	1.43
68979122--68979332	113	1.9	113	94	0	377	33	18	11	36	1.87
68979549--68979605	6	10.0	6	79	11	66	14	0	19	66	1.25
68984541--68984586	16	2.8	16	83	3	56	6	6	8	78	1.10
68993474--68993593	53	2.3	53	92	0	195	28	25	18	28	1.98
68997478--68997619	55	2.6	55	74	0	131	15	30	26	26	1.96
69008637--69008669	7	4.6	7	92	7	57	48	36	0	15	1.45
69009767--69009870	50	2.1	50	98	0	199	20	5	32	41	1.76
69012939--69012964	3	8.7	3	100	0	52	65	0	34	0	0.93
69027974--69028010	20	1.9	20	88	5	58	40	0	8	51	1.32
69030171--69030489	46	7.0	46	88	1	408	38	15	23	21	1.92
69030171--69030489	137	2.3	138	85	1	417	38	15	23	21	1.92
69032313--69032407	44	2.2	44	83	3	113	34	20	16	28	1.94
69038585--69038631	21	2.2	22	92	3	78	21	19	38	21	1.94
69045963--69046171	28	7.5	28	73	5	120	29	20	19	31	1.97
69045980--69046171	56	3.4	56	82	0	177	29	20	18	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69045936--69046136	84	2.4	84	82	1	215	29	19	21	29	1.97
69045980--69046138	84	1.9	84	88	0	237	29	20	18	30	1.97
69045980--69046166	84	2.2	84	82	0	230	29	20	17	31	1.96
69048769--69048847	39	2.0	39	97	0	149	43	24	5	27	1.75
69050095--69050129	18	1.9	18	94	0	61	45	11	14	28	1.79
69071978--69072012	11	2.9	12	84	16	54	40	0	2	57	1.14
69071979--69072017	11	3.4	11	83	13	51	38	0	5	56	1.22
69076020--69076152	36	3.8	36	69	16	109	27	14	25	33	1.94
69084069--69084490	44	9.1	45	71	11	172	33	15	19	30	1.93
69084112--69084477	45	7.8	45	71	11	182	33	15	20	30	1.94
69084157--69084373	95	2.3	96	84	2	294	34	14	18	32	1.92
69086231--69086266	15	2.3	16	90	4	56	25	5	0	69	1.10
69086239--69086287	15	3.6	14	79	17	50	26	4	0	69	1.06
69086396--69086425	7	4.4	7	91	8	53	13	0	0	86	0.57
69086396--69086425	13	2.2	14	94	5	53	13	0	0	86	0.57
69098733--69098788	20	2.8	20	80	0	76	37	21	30	10	1.87
69099821--69099873	3	17.7	3	100	0	106	33	0	0	66	0.92
69101203--69101237	15	2.3	15	90	5	52	45	0	0	54	0.99
69105686--69105732	22	2.1	23	88	4	69	25	0	0	74	0.82
69118753--69118800	25	2.0	24	83	4	60	22	6	2	68	1.23
69119045--69119096	22	2.2	25	80	19	58	32	0	9	57	1.31
69124388--69124447	10	6.0	10	86	7	77	68	1	6	23	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69125056--69125082	7	3.9	7	100	0	54	0	11	0	88	0.50
69125100--69125290	96	2.0	97	85	1	258	31	23	14	30	1.94
69126386--69126436	13	3.8	13	73	19	50	70	1	3	23	1.14
69126373--69126436	20	3.2	20	78	15	69	70	1	4	23	1.15
69150155--69150380	50	4.7	49	78	8	214	24	30	18	26	1.98
69150154--69150380	97	2.4	97	84	2	296	24	30	18	26	1.98
69150154--69150467	50	6.7	47	73	12	184	24	29	18	27	1.98
69152048--69152099	10	5.1	10	85	2	59	69	0	7	23	1.14
69152050--69152099	20	2.5	21	83	6	68	70	0	8	22	1.13
69152774--69152947	93	1.9	93	90	0	276	32	28	13	25	1.94
69153822--69153904	21	4.0	21	80	12	73	72	1	3	22	1.08
69153844--69153904	14	4.5	13	79	18	54	77	0	3	19	0.91
69153847--69153880	14	2.4	14	95	0	59	76	0	0	23	0.79
69153854--69153904	14	3.7	13	82	17	59	80	0	3	15	0.86
69153844--69153917	23	3.4	21	82	14	80	75	0	5	18	0.99
69157388--69157429	10	4.1	10	87	3	57	71	0	7	21	1.09
69157390--69157429	20	2.0	20	95	0	71	72	0	7	20	1.08
69158743--69158778	7	5.0	7	89	3	54	25	5	13	55	1.60
69159277--69159342	30	2.2	30	88	0	96	30	45	16	7	1.75
69159948--69159977	9	3.4	9	90	9	53	36	0	0	63	0.95
69162954--69163391	126	3.5	126	92	0	732	27	17	19	36	1.94
69166403--69166451	24	2.0	24	100	0	98	32	24	4	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69169517--69169634	27	4.4	27	85	0	155	33	19	22	25	1.97
69170019--69170086	33	2.0	34	83	8	86	26	20	25	27	1.99
69173637--69173701	27	2.4	27	92	0	103	36	18	20	24	1.94
69173838--69173896	27	2.2	27	84	3	75	18	22	20	38	1.93
69175393--69175643	90	2.7	89	80	4	252	33	14	25	27	1.94
69175477--69175664	90	2.1	90	82	2	234	36	17	21	25	1.94
69181713--69181751	16	2.4	16	91	0	60	69	0	30	0	0.89
69183825--69184023	46	4.2	46	88	3	256	42	15	22	19	1.89
69186009--69186088	17	4.7	17	70	16	58	48	3	2	45	1.33
69186253--69186293	18	2.2	18	86	4	55	48	7	0	43	1.30
69187007--69187052	20	2.2	21	84	3	58	58	2	2	36	1.22
69187181--69187206	4	6.5	4	100	0	52	50	23	0	26	1.50
69188524--69188633	37	2.8	40	79	9	127	26	15	24	33	1.95
69206022--69206058	18	2.1	18	100	0	74	27	0	24	48	1.51
69206201--69206241	22	1.9	22	90	5	66	56	4	12	26	1.56
69206944--69206983	9	4.4	9	80	0	53	45	15	10	30	1.78
69207090--69207140	26	2.0	26	85	7	70	50	0	1	47	1.12
69208179--69208232	18	3.0	17	81	10	63	61	0	0	38	0.96
69209029--69209067	18	2.2	18	85	0	51	46	15	7	30	1.74
69211823--69211992	92	1.8	93	88	1	261	29	27	20	22	1.99
69211816--69212033	46	4.7	46	75	6	208	30	27	19	22	1.98
69211816--69212033	92	2.4	94	78	6	248	30	27	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69218528--69218569	15	2.6	17	81	14	61	66	11	2	19	1.34
69220772--69220863	10	9.4	10	76	15	68	29	4	0	66	1.11
69220772--69220863	19	4.7	19	78	14	80	29	4	0	66	1.11
69220769--69220873	20	5.6	18	71	11	77	28	3	0	67	1.08
69223097--69223216	45	2.7	45	82	2	152	37	11	20	30	1.88
69224860--69224988	62	2.0	65	83	10	167	20	14	11	52	1.73
69226485--69226604	48	2.5	48	83	2	154	28	22	14	35	1.93
69229110--69229181	22	3.4	22	71	11	78	37	5	11	45	1.63
69229103--69229185	41	2.0	41	97	0	157	36	6	13	44	1.68
69229259--69229314	27	2.0	28	83	10	71	35	10	12	41	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255