genome.fa.s4.2.7.7.80.10.50.1000.212.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  212  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70941469--70941661	41	4.7	41	81	4	230	16	23	21	38	1.93
70941467--70941661	82	2.4	82	98	0	374	16	23	21	38	1.93
70941801--70941977	82	2.2	82	95	0	318	29	14	20	35	1.92
70942878--70942914	10	3.7	10	92	0	65	43	0	13	43	1.44
70942984--70943035	27	1.9	27	88	0	77	40	0	9	50	1.35
70944349--70944378	14	2.1	14	100	0	60	26	13	6	53	1.64
70944905--70944944	11	3.7	11	90	3	64	35	10	27	27	1.89
70945138--70945170	11	3.1	11	82	8	50	21	0	18	60	1.36
70945812--70946110	17	16.6	17	70	24	161	43	11	1	42	1.51
70945829--70945992	40	3.7	40	73	24	157	43	10	1	43	1.50
70945803--70945952	57	2.6	57	95	2	266	44	11	1	42	1.48
70945832--70946143	97	3.2	97	93	4	518	42	10	2	44	1.52
70945929--70946053	57	2.1	60	92	5	211	44	12	1	42	1.51
70945824--70946126	101	3.0	100	93	5	533	42	10	1	44	1.50
70945978--70946093	44	2.7	43	90	5	184	43	11	1	43	1.50
70946022--70946143	57	2.1	57	92	0	199	41	10	2	45	1.52
70946115--70946185	13	5.5	13	86	0	106	39	7	2	50	1.44
70946115--70946186	26	2.8	26	100	0	144	40	6	2	50	1.44
70946332--70946554	73	3.1	73	100	0	446	50	1	6	41	1.37
70946333--70946522	38	5.2	38	66	16	148	52	1	7	38	1.39
70946591--70946796	26	8.2	26	81	12	261	47	19	1	32	1.59
70946610--70946689	19	4.4	19	68	21	64	47	18	0	33	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70946595--70946675	19	4.5	19	73	20	84	46	18	0	34	1.49
70946642--70946773	69	1.9	70	95	1	239	47	19	1	31	1.59
70946615--70946796	95	1.9	96	94	2	321	46	19	1	31	1.60
70946945--70947092	74	2.0	74	100	0	296	51	1	6	40	1.37
70947129--70947432	26	12.1	26	86	8	407	47	20	1	31	1.59
70947148--70947227	19	4.4	19	69	21	73	50	18	0	31	1.48
70947133--70947213	19	4.5	19	76	14	91	49	18	0	32	1.48
70947305--70947431	25	4.9	29	91	4	102	46	22	1	29	1.61
70947128--70947432	121	2.4	122	88	6	443	47	20	1	31	1.58
70947373--70947460	18	4.4	18	70	25	61	45	20	0	34	1.51
70946183--70947418	610	2.0	596	86	9	1670	47	11	4	36	1.60
70947398--70947463	18	3.6	18	84	10	89	46	18	0	34	1.49
70947390--70947477	9	9.9	9	70	27	64	44	20	0	35	1.52
70952925--70952995	21	3.4	21	80	0	79	33	18	45	2	1.64
70953219--70953252	14	2.4	14	95	0	59	17	8	20	52	1.71
70953304--70953691	42	9.2	42	84	4	388	26	20	20	32	1.97
70953405--70953691	42	6.8	42	90	2	434	24	21	20	33	1.97
70953319--70953691	84	4.5	83	85	3	444	27	20	20	31	1.98
70955228--70955282	23	2.4	23	78	6	58	34	1	0	63	1.05
70964867--70964893	7	3.9	7	100	0	54	29	0	25	44	1.54
70967635--70967663	5	5.8	5	100	0	58	20	0	0	79	0.74
70971231--70971259	8	3.6	8	100	0	58	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70971282--70971333	5	10.4	5	100	0	104	40	0	0	59	0.97
70971391--70971419	14	2.0	15	93	6	51	62	0	37	0	0.96
70973004--70973029	6	4.3	6	100	0	52	19	19	15	46	1.85
70973054--70973084	6	5.2	6	92	0	53	16	19	16	48	1.81
70975524--70975916	202	1.9	205	80	5	465	34	14	20	31	1.92
70981084--70981153	29	2.5	26	77	18	70	42	1	1	54	1.18
70981102--70981151	13	3.2	16	70	18	52	48	0	0	52	1.00
70981094--70981151	29	2.0	30	83	10	75	44	1	1	51	1.21
70981165--70981201	16	2.3	16	86	13	58	59	0	0	40	0.97
70981235--70981286	15	3.2	15	75	19	59	55	1	0	42	1.10
70982032--70982062	7	4.4	7	91	0	53	87	12	0	0	0.55
70994363--70994397	18	1.9	18	88	0	52	82	2	5	8	0.91
70998051--70998088	16	2.2	19	86	13	55	34	10	7	47	1.67
70999397--70999436	21	1.9	21	90	10	64	50	7	0	42	1.30
71003937--71003995	29	2.0	29	90	0	91	22	8	35	33	1.84
71027553--71027622	34	2.0	36	83	5	90	28	0	4	67	1.10
71029592--71029659	18	4.0	18	84	7	81	55	0	4	39	1.20
71040605--71040681	4	18.8	4	76	5	64	5	25	3	64	1.31
71041748--71041780	14	2.4	14	90	5	50	63	0	36	0	0.95
71046000--71046170	43	4.0	43	87	1	236	25	21	31	21	1.98
71046200--71046265	13	5.1	13	83	0	87	31	7	24	36	1.83
71053571--71053617	24	2.0	24	84	16	62	31	0	17	51	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71054888--71054925	19	2.0	20	84	5	51	34	0	18	47	1.49
71056807--71056898	41	2.2	41	94	0	157	38	13	27	21	1.90
71057682--71057720	20	2.0	20	89	0	60	15	0	38	46	1.46
71058538--71058595	28	2.2	25	84	9	71	5	41	27	25	1.76
71058954--71059362	203	2.0	209	84	9	541	24	11	22	41	1.87
71059340--71059382	20	2.2	20	100	0	86	18	9	20	51	1.74
71059986--71060033	20	2.4	20	96	0	87	39	6	0	54	1.26
71063628--71063666	15	2.6	15	87	0	60	30	10	15	43	1.80
71064445--71064484	16	2.5	17	84	12	57	42	5	25	27	1.75
71066225--71066249	13	1.9	13	100	0	50	68	0	0	32	0.90
71066255--71066469	55	3.9	56	72	15	187	28	17	21	32	1.96
71066236--71066448	110	1.9	109	92	0	354	30	15	21	32	1.95
71066468--71066712	111	2.2	109	88	6	370	28	18	15	37	1.92
71067360--71067401	19	2.2	20	87	12	61	54	9	4	30	1.53
71068343--71068388	23	2.0	24	91	4	76	32	2	0	65	1.05
71084008--71084104	40	2.4	41	84	6	119	28	15	27	27	1.96
71087210--71087240	13	2.4	13	100	0	62	32	25	12	29	1.93
71087786--71087928	76	1.9	76	86	2	207	34	24	18	23	1.96
71087804--71087936	38	3.5	38	78	2	142	34	22	18	24	1.96
71087949--71088034	22	3.9	22	81	0	109	44	26	10	18	1.82
71088791--71088820	16	1.9	15	93	6	51	23	6	6	63	1.43
71096123--71096168	22	2.1	22	84	8	58	34	6	2	56	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71099463--71099492	15	2.0	15	100	0	60	20	6	13	60	1.55
71110989--71111040	18	2.9	18	82	0	68	76	3	7	11	1.12
71110991--71111040	6	8.3	6	81	0	55	78	4	6	12	1.08
71113159--71113198	20	2.0	20	85	0	53	10	35	22	32	1.87
71131060--71131108	24	2.0	24	100	0	98	44	12	8	34	1.71
71132247--71132315	30	2.4	30	92	4	115	28	23	4	43	1.73
71132856--71132902	23	2.0	23	83	0	58	19	2	14	63	1.40
71137588--71137630	23	2.0	23	86	9	63	60	20	6	11	1.54
71153027--71153061	15	2.2	16	90	5	54	31	28	2	37	1.72
71155735--71155816	41	2.0	41	92	0	137	37	28	10	23	1.88
71163867--71163912	23	2.0	23	84	12	60	45	10	6	36	1.65
71163874--71163918	23	2.0	23	82	8	56	40	13	8	37	1.76
71178134--71178500	181	2.0	182	90	1	576	32	26	15	25	1.96
71191558--71191583	12	2.2	12	100	0	52	38	7	7	46	1.61
71194305--71194339	17	2.1	18	89	10	56	34	17	0	48	1.47
71194806--71194834	14	2.1	14	100	0	58	0	13	0	86	0.58
71197707--71197752	23	2.0	23	83	8	58	69	15	6	8	1.34
71206258--71206323	33	2.0	34	90	3	107	27	27	19	25	1.99
71209921--71209962	6	7.3	6	82	17	54	45	0	0	54	0.99
71209925--71209963	16	2.3	16	86	8	51	46	0	0	53	1.00
71210715--71210766	23	2.3	22	83	9	61	55	0	3	40	1.18
71220156--71220203	24	2.0	24	95	0	87	47	8	14	29	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71220490--71220539	19	2.6	19	96	0	91	26	24	6	44	1.76
71220633--71220735	25	4.2	24	73	7	82	37	20	24	17	1.93
71220633--71220705	23	3.0	23	80	6	74	38	21	24	15	1.92
71228779--71229081	40	7.6	40	90	2	396	24	20	28	27	1.99
71236762--71237063	40	7.6	40	89	3	387	24	20	28	27	1.99
71236762--71237063	79	3.8	79	87	3	376	24	20	28	27	1.99
71236762--71237063	119	2.5	119	86	3	392	24	20	28	27	1.99
71236837--71237098	119	2.2	119	86	2	366	24	20	28	26	1.99
71270170--71270215	23	2.0	23	84	12	60	45	10	6	36	1.65
71270177--71270221	23	2.0	23	82	8	56	40	13	8	37	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255