genome.fa.s4.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  150  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48596507--48596729	39	5.7	40	85	8	257	25	27	21	25	2.00
48596507--48596729	79	2.8	80	81	11	244	25	27	21	25	2.00
48596507--48596726	118	1.9	119	82	12	283	25	27	21	25	1.99
48599185--48599238	18	2.9	18	75	5	54	29	5	3	61	1.36
48602314--48602356	16	2.7	16	85	0	59	51	18	20	9	1.74
48602565--48602679	29	4.0	28	86	2	140	26	14	29	28	1.95
48602578--48602688	57	1.9	58	88	1	170	26	14	30	28	1.95
48605643--48605700	30	1.9	30	89	6	91	20	41	25	12	1.87
48608397--48608595	84	2.4	84	78	8	194	32	12	8	47	1.71
48611537--48611596	24	2.4	25	94	2	104	23	20	20	36	1.95
48623130--48623190	23	2.7	22	80	9	70	57	0	0	42	0.98
48623130--48623192	22	2.8	22	72	18	58	57	0	0	42	0.99
48623924--48623969	21	2.2	21	100	0	92	50	15	10	23	1.75
48627238--48627285	17	2.8	17	83	0	60	27	27	18	27	1.98
48639221--48639274	27	2.0	27	96	0	99	25	7	27	38	1.83
48651311--48651380	20	3.2	24	64	35	68	40	5	20	34	1.76
48651302--48651380	40	2.0	40	100	0	158	43	5	20	31	1.73
48654489--48654525	17	2.2	17	90	0	56	35	10	10	43	1.75
48655542--48655596	27	2.0	27	85	0	74	40	7	14	38	1.74
48655844--48656088	51	4.9	52	82	5	272	26	17	25	30	1.98
48662968--48663085	43	2.8	42	81	7	148	30	16	23	28	1.97
48664765--48664806	20	2.1	20	100	0	84	45	0	26	28	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48669137--48669175	21	1.9	20	84	5	51	35	0	17	46	1.49
48673283--48673307	13	1.9	13	100	0	50	32	28	40	0	1.57
48674388--48674426	20	2.0	20	89	0	60	33	0	20	46	1.51
48684504--48684679	46	3.8	46	78	14	200	20	20	28	30	1.98
48684501--48684672	93	1.8	93	93	2	301	20	20	29	29	1.98
48688819--48688996	90	2.0	90	82	6	218	29	25	17	27	1.98
48698372--48698470	48	2.1	48	98	0	189	25	20	24	30	1.99
48700731--48700765	13	2.7	13	91	8	54	25	17	28	28	1.97
48711039--48711210	93	1.8	93	93	2	301	29	29	20	20	1.98
48711032--48711207	46	3.8	46	77	14	200	30	29	19	20	1.97
48712407--48712505	50	2.0	50	97	0	189	24	23	4	48	1.68
48713111--48713175	28	2.3	30	78	10	73	32	3	3	61	1.27
48713305--48713380	31	2.5	31	82	0	89	30	13	9	47	1.73
48714140--48714190	16	2.8	18	80	17	61	37	0	0	62	0.95
48721104--48721160	30	1.9	30	92	0	96	31	12	24	31	1.92
48722902--48723086	79	2.3	82	84	7	238	25	27	22	24	2.00
48722883--48723086	40	5.1	40	82	8	238	25	27	22	25	2.00
48724700--48724925	47	4.8	47	77	11	196	28	19	30	21	1.98
48733244--48733286	22	2.0	22	86	9	61	23	13	27	34	1.93
48741308--48741495	100	1.9	100	94	2	333	25	20	25	28	1.99
48741313--48741500	49	3.8	49	78	6	218	26	19	25	28	1.99
48756797--48756980	67	2.8	63	76	10	183	29	16	29	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48767006--48767045	15	2.7	15	100	0	80	37	40	0	22	1.54
48770265--48770330	29	2.3	29	89	5	98	27	30	13	28	1.94
48770152--48770479	174	1.9	174	95	0	593	30	24	14	29	1.95
48770432--48770510	29	2.7	30	82	13	110	30	30	13	25	1.94
48774232--48774449	40	5.5	40	90	2	307	25	27	22	24	2.00
48777035--48777222	40	4.7	40	95	0	304	22	26	20	31	1.98
48783875--48783929	23	2.4	23	100	0	110	47	10	20	21	1.80
48785741--48785963	39	5.7	40	85	8	266	25	22	27	24	2.00
48785741--48785963	79	2.8	81	84	9	282	25	22	27	24	2.00
48785741--48785996	79	3.3	79	81	10	217	26	21	27	24	1.99
48789623--48789810	40	4.7	40	95	0	304	22	26	19	30	1.98
48805096--48805280	40	4.6	40	92	2	293	24	27	24	23	2.00
48807342--48807416	34	2.2	34	90	0	123	22	29	20	28	1.98
48813205--48813426	40	5.6	40	87	3	279	25	26	23	24	2.00
48822000--48822066	34	2.0	34	96	0	125	31	25	13	29	1.94
48825022--48825246	40	5.6	40	83	4	274	23	27	24	24	2.00
48824986--48825246	80	3.3	80	83	4	296	24	26	23	25	2.00
48825842--48825928	38	2.3	38	100	0	174	31	26	14	27	1.95
48840735--48840874	37	3.8	37	95	0	244	25	31	19	24	1.98
48841053--48841106	26	2.1	26	100	0	108	38	22	0	38	1.54
48841014--48841151	74	1.9	73	90	4	224	34	24	3	36	1.73
48841076--48841614	48	12.3	47	79	14	520	30	24	5	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48841189--48841603	42	9.8	38	75	19	239	29	24	6	40	1.79
48841096--48841603	82	5.9	84	80	14	490	29	24	6	39	1.80
48847799--48847862	28	2.3	28	91	5	103	32	29	7	29	1.86
48847968--48848057	27	3.2	28	81	7	112	18	24	24	32	1.97
48847978--48848068	27	3.2	28	81	4	94	20	26	20	31	1.98
48848521--48848559	19	2.1	19	85	0	51	15	5	7	71	1.26
48849009--48849088	41	2.0	41	92	0	133	33	23	22	20	1.97
48850688--48850766	29	2.7	29	84	5	97	29	32	13	24	1.94
48858544--48858622	29	2.7	29	86	5	106	27	32	15	24	1.95
48860465--48860504	14	2.9	14	88	0	53	30	0	22	47	1.52
48861363--48861394	15	2.1	15	94	0	55	59	0	9	31	1.29
48861387--48861431	22	2.0	22	83	8	56	55	0	2	42	1.12
48864018--48864269	133	1.9	133	97	0	477	20	9	18	51	1.74
48866338--48866377	21	1.9	21	94	0	71	30	10	12	47	1.74
48872528--48872568	21	2.0	21	100	0	82	26	19	53	0	1.45
48872873--48873296	43	10.4	42	77	12	316	25	18	23	31	1.97
48873335--48873395	33	1.9	33	86	6	90	21	24	27	26	1.99
48875084--48875137	25	2.2	25	100	0	108	24	24	7	44	1.79
48879113--48879180	34	2.0	34	83	11	86	29	20	23	26	1.99
48883850--48884027	27	6.6	27	84	3	205	29	28	15	26	1.96
48883871--48884026	82	1.9	81	88	3	233	29	28	15	26	1.96
48891925--48892102	27	6.6	27	84	3	205	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48891946--48892101	82	1.9	81	88	3	233	29	28	15	26	1.96
48897184--48897248	29	2.2	29	86	2	85	23	20	35	21	1.96
48900533--48900638	27	3.9	27	80	9	117	37	21	23	16	1.93
48900526--48900640	54	2.1	54	83	3	142	38	22	22	16	1.93
48903897--48904121	40	5.7	39	87	3	272	26	26	22	24	2.00
48903890--48904120	79	2.9	80	87	3	297	26	26	22	24	2.00
48909816--48909965	55	2.8	54	80	4	149	26	15	29	28	1.96
48909788--48909965	27	6.6	27	77	6	146	25	15	28	30	1.96
48909789--48909944	82	1.9	81	81	6	190	25	16	28	30	1.96
48917822--48917971	55	2.8	54	80	4	149	26	15	29	28	1.96
48917794--48917971	27	6.6	27	77	6	146	25	15	28	30	1.96
48917795--48917950	82	1.9	81	81	6	190	25	16	28	30	1.96
48934266--48934448	29	6.3	29	89	0	278	31	31	13	24	1.93
48939005--48939110	45	2.4	44	85	4	133	31	30	18	19	1.96
48939300--48939330	16	1.9	16	93	0	53	35	19	0	45	1.51
48954313--48954496	40	4.6	41	83	11	206	24	22	27	25	2.00
48954313--48954496	79	2.3	80	84	6	223	24	22	27	25	2.00
48954314--48954529	79	2.7	78	80	8	197	25	21	27	24	1.99
48955896--48956036	39	3.6	39	95	0	228	26	20	28	24	1.99
48955896--48956064	39	4.3	39	87	5	207	24	20	28	25	1.99
48955896--48956097	79	2.6	79	82	5	196	26	19	28	25	1.99
48958279--48958325	24	2.0	24	91	0	76	36	2	38	23	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48959744--48959856	27	4.2	26	77	15	95	17	21	22	38	1.93
48959744--48959856	55	2.1	54	85	5	147	17	21	22	38	1.93
48981252--48981548	40	7.4	40	82	3	287	32	14	29	23	1.94
48981228--48981527	80	3.8	80	80	3	336	34	14	28	23	1.94
48981293--48981355	20	3.2	20	64	8	56	25	15	36	22	1.94
48981228--48981544	119	2.7	119	84	3	388	33	14	28	23	1.94
48985201--48985225	11	2.3	11	100	0	50	20	0	24	56	1.43
48987931--48988097	49	3.4	49	86	2	192	29	28	17	23	1.97
48988081--48988111	14	2.2	14	100	0	62	22	25	22	29	1.99
48990308--48990371	15	4.4	15	75	13	62	64	14	12	9	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255