Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  255  of  255  ( 30512 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82536885--82536941
29
2.0
29
82
6
71
33
1
7
57
1.36
82548547--82548592
23
2.0
23
100
0
92
26
21
8
43
1.81
82569054--82569088
18
1.9
18
100
0
70
0
48
5
45
1.26
82578676--82578715
21
1.9
21
85
10
55
45
2
5
47
1.38
82578843--82578903
32
1.9
32
86
0
86
42
9
6
40
1.64
82578719--82579110
154
2.6
148
84
6
468
38
7
9
44
1.65
82584860--82584900
19
2.0
20
86
9
57
39
0
2
58
1.11
82592162--82592241
40
2.0
40
92
7
137
52
3
6
37
1.45
82592167--82592237
20
3.5
20
69
19
51
49
4
7
39
1.49
82593428--82593532
52
2.0
53
94
1
185
13
8
11
66
1.44
82593440--82593522
24
3.3
24
71
23
80
15
7
10
66
1.43
82597644--82597691
25
2.0
24
83
4
60
62
6
2
29
1.31
82598261--82598344
41
2.0
41
86
4
116
23
2
47
26
1.64
82598310--82598344
17
2.1
17
100
0
70
17
0
54
28
1.43
82598819--82598882
18
3.4
19
70
21
53
35
20
25
18
1.95
82611729--82611773
21
2.1
21
88
8
65
60
0
4
35
1.17
82637138--82637183
23
2.0
22
87
4
65
58
0
13
28
1.35
82644409--82644490
24
3.4
25
77
14
82
35
20
26
17
1.95
82644510--82644626
25
4.7
25
73
6
87
38
17
24
18
1.93
82654809--82654870
14
4.5
13
90
6
52
48
4
9
37
1.57
82654817--82654874
28
2.1
28
87
3
82
44
5
10
39
1.61
82654823--82654874
14
3.7
14
94
0
86
50
3
7
38
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82655153--82655193
19
2.2
19
100
0
82
34
21
9
34
1.87
82656861--82656924
18
3.6
18
80
14
78
56
21
4
17
1.59
82657606--82657699
48
2.0
47
95
2
170
54
15
21
8
1.68
82664816--82664881
32
2.1
32
100
0
132
21
19
9
50
1.75
82664816--82664869
18
3.2
18
65
20
53
24
20
9
46
1.79
82668062--82668102
22
1.9
22
90
5
66
34
4
19
41
1.73
82677962--82678118
46
3.3
46
85
10
140
36
14
21
28
1.92
82677910--82678101
52
3.8
51
86
8
277
33
14
22
29
1.94
82677896--82678119
98
2.3
98
93
0
385
34
14
22
28
1.93
82678081--82678190
37
3.0
37
90
2
170
36
15
22
25
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255

The End!