genome.fa.s4.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  143  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46332127--46332158	10	3.3	10	95	4	57	62	0	6	31	1.20
46332154--46332216	27	2.3	26	76	10	63	50	11	0	38	1.38
46332183--46332212	15	2.0	15	93	0	51	40	10	0	50	1.36
46333755--46333806	15	3.3	15	76	21	52	76	0	1	21	0.87
46333763--46333806	22	2.2	19	88	12	61	77	0	2	20	0.88
46333767--46333805	15	2.8	14	84	7	53	76	0	2	20	0.90
46337489--46337531	20	2.2	20	86	0	59	62	2	6	27	1.33
46337523--46337563	16	2.4	18	80	16	59	58	9	0	31	1.31
46350189--46350229	20	2.0	20	95	0	73	14	21	14	48	1.80
46354762--46354845	42	2.0	42	100	0	168	30	14	21	33	1.93
46355123--46355174	25	2.1	25	92	0	86	38	26	5	28	1.79
46362927--46362963	17	2.2	16	90	4	56	43	13	13	29	1.82
46363213--46363350	6	23.2	6	96	1	251	49	16	15	18	1.80
46368396--46368465	27	2.6	26	95	2	95	31	28	12	27	1.93
46368396--46368493	28	3.5	28	90	2	135	31	28	13	26	1.94
46370273--46370307	4	8.8	4	100	0	70	25	0	22	51	1.48
46379016--46379055	21	1.9	21	84	0	53	37	7	40	15	1.75
46379060--46379090	15	2.1	15	93	0	53	51	0	32	16	1.44
46383233--46383309	38	2.0	38	94	0	136	27	18	15	38	1.91
46394695--46395100	85	4.8	85	89	0	587	30	25	19	24	1.98
46402287--46402548	43	6.2	43	74	9	189	29	24	20	25	1.99
46402280--46402553	85	3.2	84	88	3	397	29	24	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46412225--46412343	39	3.1	39	91	0	193	28	24	20	26	1.99
46414707--46414806	27	3.6	27	78	6	94	32	20	25	23	1.98
46414912--46414976	28	2.3	28	86	0	85	30	10	29	29	1.91
46422551--46422665	55	2.1	56	82	8	137	34	20	24	20	1.96
46422576--46422665	27	3.2	27	85	7	119	32	23	24	20	1.98
46422769--46422833	28	2.3	28	91	0	103	30	9	27	32	1.88
46423894--46423926	12	2.6	13	85	9	50	45	0	45	9	1.35
46426997--46427139	57	2.5	58	79	6	157	30	18	23	27	1.98
46429397--46429531	51	2.7	49	79	7	164	28	22	20	28	1.99
46436803--46436856	19	2.9	19	78	13	58	70	5	3	20	1.23
46440605--46440684	39	2.1	39	95	0	142	36	21	21	21	1.96
46441376--46441472	34	2.9	35	74	14	105	28	21	20	28	1.98
46445853--46445948	33	2.9	33	77	17	110	27	23	20	28	1.99
46446020--46446105	38	2.3	38	95	0	154	31	39	12	16	1.86
46447045--46447122	39	2.0	39	100	0	156	23	17	12	46	1.83
46447444--46447505	15	4.7	12	76	18	52	66	0	30	3	1.08
46453207--46453416	40	5.3	40	92	0	305	24	20	28	26	1.99
46453154--46453416	80	3.3	80	84	2	307	24	20	28	26	1.99
46453207--46453451	80	3.1	80	85	2	244	25	20	28	25	1.99
46457086--46457139	28	1.9	28	84	0	72	29	25	16	27	1.97
46457152--46457270	43	2.9	42	85	6	163	32	26	17	23	1.97
46464380--46464439	28	2.1	28	87	0	84	28	26	15	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46464417--46464559	42	3.5	41	77	2	153	30	27	17	24	1.97
46483076--46483208	54	2.5	55	86	2	198	23	21	26	29	1.99
46486463--46486562	51	2.0	51	82	7	123	24	17	28	31	1.97
46490445--46490513	10	6.9	10	73	12	52	39	0	2	57	1.13
46490449--46490530	19	4.2	19	77	13	78	34	1	3	60	1.22
46490473--46490679	9	21.4	9	64	17	53	31	4	2	60	1.32
46490449--46490531	40	2.1	39	82	6	96	33	1	3	61	1.21
46490523--46490588	29	2.3	29	84	5	80	25	3	4	66	1.25
46492182--46492218	19	1.9	19	88	0	56	21	29	24	24	1.99
46495241--46495398	43	3.7	43	80	5	176	26	16	25	31	1.97
46500625--46500818	47	4.1	47	90	0	289	32	10	29	26	1.90
46500654--46500725	22	3.1	22	64	24	58	33	13	29	23	1.93
46500699--46500774	23	3.2	25	62	24	63	28	13	34	23	1.92
46500788--46501081	48	5.8	48	84	12	401	36	6	26	30	1.83
46500865--46500892	13	2.2	13	100	0	56	46	0	25	28	1.53
46500817--46500947	61	2.2	61	95	2	239	37	5	25	31	1.79
46500867--46500899	13	2.8	12	90	9	50	42	0	21	36	1.53
46500788--46501081	109	2.8	105	84	14	419	36	6	26	30	1.83
46500878--46501081	98	2.1	98	93	3	351	36	6	26	30	1.81
46504403--46504471	35	1.9	36	85	8	97	49	10	13	27	1.73
46506001--46506106	30	3.5	30	76	2	115	41	3	26	28	1.73
46506308--46506855	77	6.9	77	81	7	541	33	19	16	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46506308--46506952	155	4.0	154	78	10	564	34	20	16	28	1.94
46506690--46506957	87	3.0	88	82	5	303	38	20	15	26	1.92
46520305--46520413	30	3.7	29	81	6	121	44	2	22	29	1.67
46520305--46520413	29	3.7	29	82	6	130	44	2	22	29	1.67
46520416--46520448	14	2.4	14	90	10	50	21	0	0	78	0.75
46522731--46522757	11	2.5	11	100	0	54	74	11	0	14	1.08
46529552--46529985	48	9.0	48	96	0	769	34	6	27	31	1.82
46530126--46530228	37	2.8	37	95	0	179	22	20	33	24	1.97
46531898--46532029	27	4.9	27	85	0	174	39	20	17	22	1.92
46533437--46533488	24	2.2	24	82	0	59	23	44	0	32	1.54
46533445--46533484	12	3.3	12	85	0	53	30	35	0	35	1.58
46534650--46534691	22	1.9	22	95	0	75	23	28	9	38	1.86
46540111--46540201	27	3.4	27	92	0	137	42	20	17	18	1.89
46540191--46540434	27	9.0	27	82	5	246	25	15	18	40	1.90
46540748--46540784	18	2.1	18	89	0	56	21	24	13	40	1.89
46543387--46543568	28	6.5	28	93	1	294	34	26	11	27	1.91
46551412--46551520	28	3.9	28	90	4	159	34	25	11	27	1.91
46551412--46551520	57	2.0	54	87	5	155	34	25	11	27	1.91
46563653--46563833	28	6.5	28	95	0	319	34	25	11	28	1.91
46571637--46571818	28	6.5	28	92	1	285	33	26	12	27	1.92
46574468--46574551	25	3.4	25	74	0	87	32	23	20	23	1.98
46580444--46580636	96	2.0	96	86	2	271	33	16	13	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46591611--46591723	41	2.7	42	87	5	158	46	0	9	42	1.42
46591611--46591735	42	3.0	41	85	4	162	49	1	10	38	1.47
46594851--46594944	28	3.4	28	92	1	145	26	11	27	34	1.91
46594851--46594957	28	3.9	28	85	6	121	28	11	25	34	1.90
46602950--46603102	28	5.5	28	93	0	245	26	12	28	33	1.92
46607892--46608003	24	4.7	24	88	0	161	37	30	13	18	1.89
46610989--46611129	56	2.5	58	82	4	171	26	15	22	35	1.94
46620177--46620262	43	2.0	43	88	0	127	29	31	17	22	1.96
46624038--46624264	40	5.7	40	96	0	409	21	27	20	30	1.98
46632717--46632945	40	5.7	40	96	0	413	21	27	20	30	1.98
46635624--46635663	21	1.9	21	89	0	62	12	37	27	22	1.90
46652515--46652748	41	5.8	40	87	4	303	28	28	22	20	1.99
46661189--46661237	21	2.3	21	100	0	98	36	10	4	48	1.56
46677348--46677409	22	2.8	22	80	9	72	33	22	22	20	1.97
46677552--46677673	41	3.0	41	92	0	190	25	29	22	22	1.99
46677933--46678209	27	10.2	27	74	10	109	30	9	19	40	1.83
46677952--46678193	54	4.4	54	78	7	186	29	8	19	42	1.81
46677939--46678203	81	3.2	80	80	5	228	29	8	19	41	1.81
46678777--46678895	40	2.9	41	90	5	179	26	31	22	20	1.98
46679153--46679476	27	12.0	27	79	5	244	32	8	18	41	1.80
46679255--46679476	80	2.8	79	81	8	243	31	7	19	41	1.79
46679153--46679485	107	3.1	106	78	4	292	32	8	18	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46679840--46679904	22	3.0	22	77	8	69	32	20	26	21	1.97
46680049--46680167	40	2.9	41	91	2	186	25	31	23	20	1.98
46680427--46680749	27	12.0	27	81	6	244	31	8	18	41	1.81
46680434--46680748	80	3.9	79	80	6	269	31	7	18	42	1.79
46681113--46681177	22	3.0	22	80	8	78	32	21	24	21	1.98
46681315--46681438	40	3.1	40	87	2	167	29	32	20	17	1.96
46681699--46682022	27	12.0	27	81	4	233	31	9	18	40	1.82
46681799--46682021	81	2.8	80	82	7	263	30	7	19	42	1.79
46682386--46682450	22	3.0	22	77	8	69	32	20	26	21	1.97
46682588--46682711	40	3.1	40	87	2	167	29	32	20	17	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255