genome.fa.s4.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  103  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32262182--32262438	140	1.8	140	85	6	360	28	19	29	22	1.98
32270819--32271605	47	16.4	47	93	2	1270	28	31	7	32	1.85
32271168--32271243	22	3.3	22	64	10	62	26	30	11	31	1.92
32271190--32271268	25	3.3	25	63	10	65	31	30	6	31	1.82
32271337--32271419	27	3.3	27	63	27	72	32	30	4	32	1.79
32270819--32271605	339	2.3	333	94	2	1378	28	31	7	32	1.85
32271460--32271535	22	3.3	22	64	10	62	26	30	11	31	1.92
32277523--32277704	51	3.6	51	83	3	170	25	15	29	29	1.96
32278995--32279027	16	1.9	18	88	11	52	48	12	15	24	1.78
32279515--32279728	45	4.9	45	84	7	234	25	28	20	25	1.99
32280533--32280672	47	3.0	47	90	0	226	44	12	14	28	1.82
32284206--32284413	28	7.5	28	93	2	332	31	28	14	25	1.95
32284206--32284438	55	4.2	55	90	1	340	31	28	14	25	1.94
32284207--32284438	83	2.8	83	90	2	349	31	28	14	25	1.94
32302930--32303137	28	7.5	28	93	2	332	31	28	14	25	1.95
32302930--32303162	55	4.2	55	90	1	340	31	28	14	25	1.94
32302931--32303162	83	2.8	83	90	2	349	31	28	14	25	1.94
32324263--32324713	53	8.5	53	77	8	375	23	23	17	35	1.95
32324485--32324713	108	2.1	107	83	2	280	22	23	19	34	1.96
32324251--32324774	262	2.0	262	93	0	897	23	23	16	35	1.95
32324700--32324821	47	2.6	47	92	0	190	27	22	14	36	1.93
32332882--32333029	67	2.2	69	78	10	162	32	16	28	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32351623--32351834	40	5.3	39	94	2	343	27	27	20	24	1.99
32351623--32351834	79	2.7	79	94	2	354	27	27	20	24	1.99
32359392--32359696	40	7.7	40	92	4	458	26	27	20	25	1.99
32361885--32361923	19	2.1	19	95	0	69	46	25	12	15	1.81
32365201--32365257	26	2.2	26	83	3	69	26	19	19	35	1.95
32365504--32365546	12	3.4	13	81	15	54	27	0	0	72	0.85
32365504--32365546	15	2.9	14	81	18	52	27	0	0	72	0.85
32372043--32372251	47	4.4	47	89	2	301	28	29	9	33	1.88
32372959--32373012	26	2.1	26	82	6	65	35	24	5	35	1.79
32375083--32375116	17	1.9	18	88	5	52	5	11	26	55	1.58
32378256--32378288	14	2.5	13	90	9	57	60	12	15	12	1.59
32413640--32413758	46	2.6	46	87	0	166	28	24	13	33	1.93
32418097--32418171	28	2.7	28	89	0	114	36	13	22	28	1.92
32432893--32432936	10	4.4	10	82	8	54	75	2	22	0	0.92
32432900--32432937	19	2.0	20	94	5	69	76	0	23	0	0.79
32433830--32433943	38	2.9	40	68	9	99	30	14	20	34	1.93
32433828--32433962	40	3.4	39	69	7	112	28	16	22	32	1.96
32435370--32435443	28	2.7	28	87	2	105	36	13	21	28	1.91
32442111--32442172	28	2.2	28	79	0	70	37	8	25	29	1.85
32444146--32444198	25	2.1	25	89	0	79	28	18	20	32	1.97
32447155--32447269	29	4.0	29	83	6	137	27	15	28	27	1.96
32453209--32453391	40	4.6	40	93	0	303	26	22	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32461459--32461641	40	4.6	40	93	0	303	26	22	28	21	1.99
32463056--32463090	16	2.2	16	89	0	52	51	22	17	8	1.72
32463203--32463247	17	2.5	18	82	7	56	20	24	35	20	1.96
32463203--32463238	18	1.9	19	88	5	56	22	22	36	19	1.95
32463318--32463419	29	3.6	28	78	6	98	26	16	27	29	1.97
32467260--32467412	43	3.6	42	77	10	150	33	25	16	24	1.96
32478501--32478724	40	5.6	40	87	3	292	26	28	21	23	1.99
32485222--32485399	27	6.6	27	84	3	205	29	28	15	26	1.96
32485243--32485398	82	1.9	81	88	3	233	29	28	15	26	1.96
32491991--32492112	22	5.3	22	62	21	61	25	29	11	33	1.91
32491963--32492463	47	10.6	47	93	2	731	27	29	9	33	1.88
32493736--32493906	85	2.0	85	98	0	333	27	26	8	38	1.85
32493737--32493867	41	3.1	41	63	25	101	29	24	6	39	1.81
32501790--32501910	48	2.5	48	84	0	152	29	22	19	28	1.98
32501583--32502045	250	1.9	250	89	0	730	32	24	14	28	1.95
32511253--32511290	19	2.0	20	85	15	53	39	21	0	39	1.53
32511514--32511641	46	2.8	46	81	9	154	30	27	19	22	1.98
32511517--32511660	46	3.1	45	71	18	127	29	27	19	22	1.98
32512064--32512123	30	2.0	30	86	0	84	33	25	5	36	1.78
32515490--32515568	37	2.1	37	90	0	122	25	31	18	24	1.98
32515687--32516076	47	8.3	47	95	0	663	27	30	9	32	1.89
32522717--32522754	19	2.0	20	85	15	53	39	21	0	39	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32522984--32523154	93	1.8	93	89	0	270	29	27	20	22	1.99
32522979--32523151	46	3.7	46	76	10	172	30	26	20	23	1.98
32523574--32523633	30	2.0	30	86	0	84	33	25	5	36	1.78
32528544--32528748	40	5.2	40	92	1	326	22	22	26	27	1.99
32530732--32530817	43	2.0	43	100	0	172	25	16	27	30	1.97
32534979--32535006	13	2.2	13	100	0	56	28	0	14	57	1.38
32536423--32536588	40	4.2	40	90	2	255	23	22	25	27	2.00
32539508--32539634	49	2.6	48	92	2	209	47	0	10	41	1.43
32546716--32546775	24	2.4	25	79	17	72	43	20	11	25	1.85
32548372--32548640	48	5.6	48	75	5	240	28	19	28	23	1.98
32578432--32578767	48	7.0	48	92	0	539	35	5	26	31	1.81
32578909--32579011	37	2.8	37	92	0	170	24	19	31	25	1.98
32581695--32581865	93	1.8	93	91	0	279	29	29	19	21	1.97
32581687--32581856	46	3.7	45	78	12	184	31	30	18	20	1.96
32582419--32582455	20	1.9	18	89	10	56	35	21	0	43	1.53
32586414--32586522	37	2.9	37	93	0	182	27	30	19	22	1.98
32586667--32586949	48	5.8	48	89	5	426	30	26	7	35	1.84
32586667--32586954	98	2.9	98	93	3	483	30	26	7	35	1.84
32586919--32587222	47	6.1	47	78	13	304	26	27	11	33	1.91
32587076--32587109	16	2.1	16	100	0	68	29	26	8	35	1.87
32587029--32587156	63	2.0	63	98	0	247	26	26	11	35	1.91
32586982--32587201	110	2.0	110	95	0	395	26	27	11	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32587122--32587193	22	3.1	22	64	24	58	23	29	13	33	1.93
32592799--32592834	18	2.0	18	94	0	63	19	5	36	38	1.75
32594125--32594464	27	12.8	27	87	4	422	25	14	20	39	1.90
32594825--32594854	12	2.4	12	94	5	51	23	20	10	46	1.80
32606579--32606753	50	3.5	48	81	10	192	29	27	17	26	1.97
32606579--32606764	100	1.9	99	84	5	250	28	28	17	25	1.97
32612159--32612356	43	4.6	43	92	0	333	31	31	23	13	1.93
32612351--32612434	38	2.2	38	86	0	123	32	23	21	22	1.98
32614966--32615152	50	3.8	49	80	7	189	27	27	19	25	1.99
32618628--32618779	27	5.6	27	93	3	241	30	28	13	26	1.94
32618628--32618779	55	2.8	55	94	0	259	30	28	13	26	1.94
32626671--32626822	27	5.6	27	93	3	241	30	28	13	26	1.94
32626671--32626822	55	2.8	55	94	0	259	30	28	13	26	1.94
32630242--32630419	27	6.6	27	84	3	205	29	28	15	26	1.96
32630263--32630418	82	1.9	81	88	3	233	29	28	15	26	1.96
32637731--32637881	27	5.6	27	86	7	128	31	28	12	27	1.93
32637731--32637881	55	2.8	53	86	8	205	31	28	12	27	1.93
32654441--32654623	79	2.3	80	84	7	230	25	27	22	24	2.00
32654439--32654623	40	4.7	40	83	7	234	25	28	22	23	2.00
32658415--32658454	21	1.9	21	100	0	80	15	10	32	42	1.79
32663048--32663162	27	4.3	26	88	4	140	20	22	20	35	1.96
32665257--32665380	49	2.5	49	94	2	214	26	17	25	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32666314--32666427	39	2.9	39	81	2	122	22	22	28	25	1.99
32670917--32671158	43	5.6	43	94	0	403	12	22	33	31	1.91
32670898--32671169	86	3.2	86	91	1	433	13	21	33	31	1.92
32671484--32671593	45	2.5	42	81	11	123	24	21	26	27	1.99
32671534--32671617	42	2.0	43	88	4	125	22	23	30	22	1.99
32674322--32674366	15	3.0	15	80	9	56	11	15	17	55	1.68
32678524--32678748	40	5.7	40	82	5	260	24	22	27	25	2.00
32678531--32678781	79	3.2	77	79	7	238	26	21	26	25	1.99
32686572--32686796	40	5.7	40	84	5	260	24	22	27	25	2.00
32686628--32686819	80	2.4	79	85	5	219	26	19	27	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255