genome.fa.s4.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  144  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46682972--46683295	27	12.0	27	81	4	233	31	9	18	40	1.82
46683072--46683294	81	2.8	80	82	7	263	30	7	19	42	1.79
46683659--46683723	22	3.0	22	77	8	69	32	20	26	21	1.97
46683868--46683986	40	2.9	41	91	2	186	25	31	23	20	1.98
46684246--46684568	27	12.0	27	81	6	244	31	8	18	41	1.81
46684253--46684567	80	3.9	79	80	6	269	31	7	18	42	1.79
46684932--46684996	22	3.0	22	80	8	78	32	21	24	21	1.98
46685134--46685257	40	3.1	40	84	2	158	29	31	20	18	1.97
46685518--46685841	27	12.0	27	81	4	233	31	9	18	40	1.82
46685618--46685840	81	2.8	80	82	7	263	30	7	19	42	1.79
46686205--46686268	22	3.0	22	77	11	69	32	20	25	21	1.97
46686413--46686531	40	2.9	41	91	2	186	25	31	23	20	1.98
46686791--46687112	27	12.0	27	80	6	235	31	8	18	40	1.81
46686791--46687112	53	6.0	54	78	7	232	31	8	18	40	1.81
46686798--46687111	80	3.9	79	79	7	260	31	7	18	42	1.79
46687476--46687540	22	3.0	22	80	8	78	32	21	24	21	1.98
46687678--46687801	40	3.1	40	87	2	167	29	32	20	17	1.96
46688074--46688306	27	8.6	27	78	6	134	31	9	17	42	1.80
46688062--46688306	54	4.5	54	77	3	172	31	10	17	40	1.83
46688145--46688304	54	2.9	54	79	8	173	33	8	16	41	1.78
46688162--46688330	81	2.1	81	83	4	216	30	7	18	43	1.77
46688258--46688342	26	3.2	26	75	11	91	29	4	24	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46688720--46688784	22	3.0	22	80	8	78	32	21	24	21	1.98
46688929--46689047	40	2.9	41	91	2	186	25	31	23	20	1.98
46689319--46689511	27	7.1	27	78	5	115	31	9	16	43	1.79
46689407--46689602	27	7.3	26	83	5	212	30	7	19	42	1.79
46689407--46689618	81	2.6	81	81	2	248	30	7	20	41	1.80
46689993--46690057	22	3.0	22	80	8	78	32	21	24	21	1.98
46690202--46690320	40	2.9	41	88	1	168	26	29	22	21	1.99
46690617--46690902	27	10.6	27	79	2	189	30	7	18	42	1.79
46690616--46690876	81	3.2	80	79	3	218	30	7	18	43	1.77
46690680--46690902	81	2.8	81	80	2	234	30	7	20	41	1.80
46691268--46691332	22	3.0	22	82	8	87	32	23	24	20	1.98
46691476--46691596	41	3.0	41	92	0	188	25	29	22	22	1.99
46691846--46691904	27	2.2	27	81	0	64	33	16	18	30	1.94
46691868--46691995	55	2.4	54	80	6	143	32	11	14	41	1.81
46691861--46692142	27	10.4	27	72	8	128	30	9	18	41	1.82
46692081--46692150	26	2.6	27	88	4	106	31	8	20	40	1.82
46692021--46692125	55	1.9	55	80	1	122	27	6	21	43	1.77
46692139--46692230	27	3.4	27	83	8	116	29	17	16	36	1.92
46692139--46692241	54	1.9	53	88	5	154	29	18	16	35	1.93
46693323--46693418	24	3.9	24	84	5	122	27	23	16	32	1.96
46700827--46700908	24	3.6	22	74	8	74	24	19	18	37	1.94
46700861--46700931	24	2.9	24	83	8	81	28	23	14	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46708836--46708948	43	2.6	44	79	8	117	31	23	16	28	1.96
46712797--46712897	24	4.1	25	85	6	93	33	13	21	30	1.93
46712811--46712892	24	3.4	24	89	1	110	32	12	24	30	1.92
46715101--46715233	43	3.1	43	90	0	203	32	25	13	28	1.94
46718416--46718637	43	5.2	43	90	0	336	12	23	32	31	1.92
46718816--46718891	28	2.7	28	76	8	73	25	17	27	30	1.97
46720415--46720454	13	3.0	13	80	20	55	32	2	12	52	1.52
46732465--46732539	37	2.0	37	100	0	150	21	32	8	38	1.82
46740106--46740249	40	3.6	40	90	1	218	21	22	29	27	1.99
46740106--46740282	79	2.2	79	84	4	214	23	22	28	25	1.99
46742055--46742243	41	4.8	40	83	7	210	21	22	29	26	1.99
46742097--46742243	81	1.9	75	87	8	213	21	22	29	27	1.99
46753926--46754028	30	3.4	31	80	6	113	19	17	13	49	1.79
46753926--46754012	6	14.3	6	71	20	65	19	18	13	48	1.81
46755896--46756042	40	3.7	41	86	3	194	24	23	26	25	2.00
46775252--46775379	48	2.7	48	95	0	220	24	18	30	26	1.98
46779318--46779746	47	9.1	47	89	2	527	31	11	30	26	1.92
46779720--46779856	46	3.0	46	87	0	193	34	8	32	25	1.85
46780882--46781160	47	5.9	47	93	0	432	30	12	31	25	1.93
46781134--46781270	46	3.0	46	89	0	202	34	8	31	25	1.86
46781442--46781523	37	2.2	37	84	0	101	21	18	32	26	1.97
46783656--46783836	79	2.3	81	83	7	228	24	22	28	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46783656--46783838	40	4.6	39	82	9	201	24	22	28	25	1.99
46783688--46783861	79	2.2	78	81	10	201	26	21	26	25	2.00
46791116--46791178	30	2.1	30	88	5	92	26	23	12	36	1.91
46791188--46791279	30	3.1	30	84	1	96	21	20	15	42	1.89
46791230--46791301	30	2.4	30	90	0	108	25	20	11	43	1.85
46791081--46791316	119	2.0	120	84	4	316	23	22	14	39	1.91
46804379--46804483	39	2.7	39	86	2	131	21	24	29	23	1.99
46805323--46805492	44	3.9	43	78	12	170	24	18	24	32	1.97
46805334--46805492	43	3.7	43	80	12	175	24	19	25	30	1.98
46807423--46807595	46	3.7	46	79	10	208	22	20	26	30	1.98
46807420--46807590	93	1.8	93	94	0	306	22	20	27	29	1.98
46809709--46809788	37	2.2	37	86	0	115	27	31	17	23	1.97
46809907--46810477	47	11.9	47	95	1	926	29	29	8	32	1.87
46812421--46812766	40	8.6	40	89	1	514	27	28	20	23	1.99
46813980--46814058	37	2.1	37	88	0	113	25	30	18	25	1.98
46814177--46814745	47	11.9	47	93	1	922	29	29	8	32	1.87
46814177--46814745	96	6.0	94	93	2	922	29	29	8	32	1.87
46824333--46824432	51	2.0	51	93	0	173	38	18	11	33	1.85
46836356--46836438	43	1.9	43	85	4	114	27	28	19	24	1.98
46843132--46843309	27	6.6	26	82	6	178	26	15	28	29	1.96
46843133--46843288	82	1.9	81	86	3	224	26	16	28	28	1.97
46843129--46843309	82	2.2	81	82	2	220	27	16	27	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46843214--46843320	27	3.9	27	85	1	70	26	14	28	30	1.95
46851728--46851767	21	1.9	21	89	0	62	12	35	27	25	1.92
46858016--46858134	46	2.5	46	81	8	134	26	15	29	28	1.96
46871611--46871645	15	2.2	16	90	5	54	2	54	0	42	1.15
46876094--46876154	30	2.0	30	83	0	77	31	22	8	37	1.84
46896595--46896763	48	3.6	47	88	7	220	28	18	28	24	1.98
46896594--46896817	48	4.8	46	82	11	201	28	19	27	24	1.99
46898000--46898039	21	1.9	21	94	0	71	12	35	27	25	1.92
46902282--46902433	27	5.6	27	92	3	232	30	28	13	27	1.94
46902282--46902458	55	3.2	55	89	0	246	31	29	12	26	1.93
46909299--46909378	29	2.7	30	84	3	108	32	12	21	33	1.91
46909768--46909987	47	4.7	47	81	9	220	28	20	28	23	1.98
46918009--46918087	37	2.1	37	90	0	122	25	31	18	24	1.98
46918205--46918643	47	9.4	47	93	4	700	31	29	7	31	1.86
46918205--46918643	135	3.1	139	90	8	703	31	29	7	31	1.86
46918205--46918643	182	2.4	188	91	6	709	31	29	7	31	1.86
46918519--46918597	25	3.3	25	64	10	74	34	27	5	32	1.79
46922076--46922285	39	5.4	39	83	3	246	26	26	23	23	2.00
46922591--46922668	29	2.7	29	84	7	97	26	33	15	24	1.95
46922650--46922751	43	2.4	43	91	1	179	25	36	14	23	1.93
46924590--46924667	36	2.1	37	86	6	106	25	29	19	25	1.98
46924891--46925212	46	7.0	47	96	2	591	30	29	8	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46924891--46925212	93	3.5	93	95	3	578	30	29	8	31	1.87
46929644--46929755	42	2.6	44	84	5	149	25	16	25	33	1.95
46929648--46929765	43	2.8	42	79	6	139	23	16	25	33	1.96
46931413--46931462	25	2.0	25	88	0	73	26	32	24	18	1.97
46935432--46935466	18	1.9	18	88	11	54	57	28	5	8	1.52
46935431--46935472	18	2.4	18	80	11	52	57	30	4	7	1.47
46947391--46947605	39	5.4	39	81	6	229	26	26	21	25	2.00
46947441--46947605	79	2.1	79	85	5	217	27	26	21	25	1.99
46947915--46947993	29	2.7	29	82	5	88	26	34	13	25	1.94
46947975--46948077	43	2.4	43	95	0	188	25	35	15	23	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255