genome.fa.s4.2.7.7.80.10.50.1000.224.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  224  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74420644--74421026	175	2.2	175	92	0	624	33	20	19	26	1.96
74420762--74421065	87	3.5	87	67	16	241	32	18	20	28	1.96
74420693--74420968	86	3.2	86	66	17	217	34	20	19	25	1.96
74424383--74424440	29	2.0	29	100	0	116	48	17	3	31	1.64
74425805--74425866	31	1.9	32	84	12	83	40	6	0	53	1.27
74426052--74426081	15	2.1	15	93	6	53	36	26	6	30	1.82
74430889--74431379	249	2.0	249	96	0	910	35	13	16	33	1.89
74432164--74432224	16	3.8	15	77	12	50	59	0	4	36	1.19
74433195--74433220	7	3.7	7	100	0	52	15	0	11	73	1.11
74433784--74433821	17	2.2	17	86	9	51	39	0	2	57	1.12
74433876--74434115	122	1.9	126	87	3	353	32	1	14	51	1.52
74435987--74436025	16	2.4	16	100	0	78	30	28	20	20	1.98
74439225--74439267	21	2.0	21	86	0	59	48	9	4	37	1.56
74439486--74439548	28	2.2	29	78	18	71	17	19	7	55	1.66
74444619--74444789	61	2.9	57	76	11	182	36	15	25	22	1.93
74444444--74444824	119	3.2	119	82	3	464	34	15	24	25	1.95
74444721--74444804	29	2.9	28	73	7	71	33	19	26	21	1.97
74453756--74454258	47	10.6	47	93	2	792	33	8	29	29	1.86
74453756--74454258	96	5.3	94	91	3	810	33	8	29	29	1.86
74453756--74454258	143	3.5	142	93	2	814	33	8	29	29	1.86
74456847--74456880	17	1.9	18	88	5	52	32	0	20	47	1.51
74457636--74457737	51	2.0	51	90	3	161	30	35	4	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74458539--74458585	21	2.2	22	85	11	62	63	21	0	14	1.30
74460247--74460507	124	2.1	122	88	3	389	34	18	9	37	1.83
74461363--74461403	21	2.0	21	85	9	57	36	14	21	26	1.93
74466852--74466891	3	13.3	3	94	0	71	30	0	2	67	1.04
74469928--74469970	20	2.2	20	100	0	86	41	9	16	32	1.80
74483333--74483360	9	3.1	9	100	0	56	21	0	0	78	0.75
74484101--74484158	30	1.9	30	89	0	89	32	12	25	29	1.92
74484496--74484763	94	2.9	95	84	3	314	27	20	28	23	1.99
74484548--74484854	47	6.5	47	70	12	177	28	19	27	24	1.98
74484640--74484805	44	3.6	45	75	12	140	28	17	27	27	1.98
74487966--74488000	18	1.9	18	94	0	61	22	14	25	37	1.92
74492511--74492536	12	2.2	12	100	0	52	76	0	0	23	0.78
74494874--74495101	110	2.1	110	89	1	341	18	25	26	29	1.98
74501386--74501418	16	2.0	17	88	5	50	33	15	0	51	1.43
74503182--74503217	13	2.8	13	100	0	72	52	0	0	47	1.00
74503503--74503564	28	2.2	28	82	5	72	74	4	19	1	1.09
74503490--74503567	6	12.2	6	73	16	50	74	3	17	3	1.12
74503525--74503566	18	2.3	18	88	8	59	76	0	23	0	0.79
74503974--74504014	19	2.1	20	90	4	66	60	0	7	31	1.24
74506370--74506509	25	5.6	25	73	10	92	33	22	25	17	1.96
74506582--74506647	25	2.7	24	76	4	69	37	13	30	18	1.89
74508994--74509024	16	1.9	16	100	0	62	51	0	9	38	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74508997--74509038	20	2.2	18	91	8	66	52	0	4	42	1.22
74511425--74511493	34	2.0	34	94	0	120	33	14	11	40	1.82
74519115--74519141	5	5.4	5	100	0	54	62	0	0	37	0.95
74519240--74519295	25	2.3	24	81	3	67	60	7	1	30	1.33
74519307--74519366	11	5.5	11	73	15	61	45	0	33	21	1.52
74519333--74519381	22	2.3	21	86	6	64	36	0	34	28	1.58
74528533--74528597	30	2.2	30	82	0	76	18	15	26	40	1.90
74530634--74530666	13	2.5	13	90	0	57	24	24	42	9	1.83
74538333--74538372	20	2.0	20	85	0	53	5	37	10	47	1.59
74549178--74549216	21	1.9	21	89	5	62	51	5	0	43	1.24
74555115--74555148	11	3.0	11	87	8	50	64	5	20	8	1.43
74555115--74555148	12	2.9	12	91	4	52	64	5	20	8	1.43
74555830--74555985	31	5.1	31	68	17	119	23	5	27	44	1.74
74555792--74556039	61	4.1	61	91	1	365	22	5	26	45	1.75
74555809--74556078	122	2.2	122	81	6	280	23	5	23	47	1.73
74581594--74581646	14	3.5	14	72	18	52	32	11	20	35	1.88
74581584--74581646	32	2.0	32	100	0	126	28	15	19	36	1.92
74581584--74581633	14	3.0	18	66	22	54	26	18	18	38	1.93
74589541--74589589	22	2.3	22	78	3	55	18	6	4	71	1.23
74592836--74592927	41	2.2	41	83	9	107	26	4	1	68	1.15
74592838--74592912	22	3.6	21	75	21	68	26	5	1	66	1.21
74592912--74592959	8	6.0	8	80	9	53	22	2	0	75	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74592912--74592953	17	2.5	17	85	11	52	23	0	0	76	0.79
74592875--74592953	32	2.4	32	79	8	88	25	3	0	70	1.03
74592943--74592985	20	2.2	20	91	8	70	9	6	2	81	0.95
74592943--74592991	20	2.5	20	83	12	57	12	8	2	77	1.07
74595263--74595310	24	2.0	24	95	0	87	31	12	18	37	1.88
74599120--74599285	43	3.9	42	77	6	174	26	16	24	33	1.96
74610839--74610959	43	2.9	41	76	7	118	29	16	22	31	1.96
74614707--74614746	21	1.9	21	85	10	55	37	10	0	52	1.35
74618914--74618945	13	2.4	14	85	15	50	50	6	3	40	1.43
74618912--74618945	12	2.7	13	86	9	52	47	5	5	41	1.52
74620591--74620640	2	25.0	2	100	0	100	0	0	50	50	1.00
74626907--74626933	14	1.9	14	100	0	54	44	14	0	40	1.46
74628884--74628936	21	2.7	19	80	13	54	64	1	3	30	1.22
74628922--74628958	15	2.6	14	87	8	56	72	2	0	24	0.97
74630737--74630769	8	4.1	8	88	11	50	24	0	0	75	0.80
74639799--74639844	18	2.5	19	72	10	51	26	23	0	50	1.50
74640878--74640919	13	3.2	13	86	6	57	0	26	0	73	0.83
74641137--74641202	5	13.0	5	95	1	114	59	3	0	37	1.13
74649603--74649667	31	2.1	31	91	0	103	44	10	10	33	1.74
74651972--74652084	54	2.1	54	98	0	217	36	7	27	29	1.83
74657128--74657180	16	3.2	16	92	5	88	24	0	35	39	1.56
74657416--74657450	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74657536--74657570	18	2.0	17	88	5	52	54	0	0	45	0.99
74657399--74658098	120	5.8	120	88	7	1028	48	4	2	44	1.35
74657891--74657948	16	3.7	15	86	6	80	51	0	0	48	1.00
74657875--74657948	31	2.4	31	84	10	91	51	1	0	47	1.09
74657896--74657958	18	3.8	18	74	23	57	50	1	0	47	1.10
74657924--74658068	47	3.2	46	72	16	156	49	3	2	44	1.30
74657922--74658044	44	2.7	43	71	17	106	48	2	2	46	1.28
74658046--74658079	16	2.1	16	89	10	52	50	5	0	44	1.26
74658320--74658450	66	2.0	66	93	0	226	35	20	10	32	1.87
74673533--74673559	9	3.0	9	100	0	54	44	33	22	0	1.53
74686699--74686773	37	2.0	37	97	0	141	32	17	13	37	1.88
74693039--74693266	42	5.1	42	78	14	217	28	14	27	30	1.95
74693072--74693176	55	1.9	55	96	0	192	26	14	28	30	1.95
74693039--74693218	97	1.9	97	93	0	315	28	14	27	30	1.95
74693120--74693310	84	2.3	84	83	8	221	29	12	27	30	1.93
74695111--74695383	91	3.0	91	72	5	237	32	6	19	41	1.76
74711246--74711278	15	2.3	15	89	5	50	18	6	0	75	1.00
74714998--74715061	32	2.0	31	88	8	94	71	9	9	9	1.30
74715559--74715602	3	14.7	3	100	0	88	31	0	0	68	0.90
74724829--74724912	26	3.2	26	96	0	150	36	25	4	33	1.77
74729078--74729130	26	2.0	27	85	7	74	24	15	22	37	1.92
74730618--74730701	26	3.2	26	94	0	141	38	23	4	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74731626--74731658	17	2.0	16	94	5	57	30	15	0	54	1.41
74731879--74732153	46	6.0	46	92	1	417	23	24	14	37	1.92
74731879--74732152	93	3.0	92	91	2	415	23	24	13	37	1.92
74731879--74732153	139	2.0	138	89	2	426	23	24	14	37	1.92
74734585--74734652	30	2.3	30	84	5	84	27	19	5	47	1.72
74738560--74738588	15	1.9	15	100	0	58	65	6	6	20	1.40
74738678--74738707	15	2.0	15	100	0	60	20	26	6	46	1.75
74745639--74745666	6	4.7	6	100	0	56	85	0	0	14	0.59
74747515--74747552	20	2.0	20	89	5	60	44	0	5	50	1.24
74751585--74751627	21	2.0	21	82	8	52	55	13	13	16	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255