genome.fa.s4.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  184  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60790167--60790331	79	2.1	79	83	8	203	25	20	28	25	1.99
60793339--60793494	39	4.0	39	79	4	161	30	3	19	46	1.66
60793339--60793494	78	2.0	79	86	6	219	30	3	19	46	1.66
60793348--60793517	78	2.2	79	82	5	202	32	4	18	44	1.70
60794163--60794212	19	2.5	20	90	6	84	24	22	20	34	1.97
60795761--60795802	21	2.0	21	90	0	66	38	11	0	50	1.40
60795831--60796006	94	1.9	94	85	2	246	38	15	7	38	1.75
60795688--60796024	94	3.7	90	70	14	235	35	17	6	39	1.77
60795964--60796153	69	2.8	69	83	5	242	38	16	7	37	1.76
60796374--60796591	69	3.2	70	85	5	293	34	19	5	40	1.75
60796591--60796802	93	2.3	93	89	4	313	33	20	7	39	1.81
60803184--60803239	29	2.0	28	82	10	69	48	16	7	28	1.72
60806523--60806578	11	5.5	11	71	16	57	35	12	19	32	1.89
60806512--60806578	20	3.3	20	93	0	116	34	11	20	32	1.90
60806628--60806723	24	4.0	24	86	4	131	31	20	20	27	1.98
60832856--60832900	22	2.0	22	95	0	81	20	11	13	55	1.68
60844795--60844843	18	2.7	18	77	0	62	44	24	6	24	1.76
60856425--60856685	130	2.0	130	100	0	522	25	21	9	42	1.84
60859954--60860221	40	6.7	40	94	0	464	31	20	26	21	1.98
60868622--60868869	39	6.7	39	81	12	269	32	18	26	21	1.97
60889208--60889469	40	6.7	40	89	4	410	31	20	26	21	1.98
60889207--60889469	78	3.4	79	91	4	417	31	20	26	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60889208--60889469	117	2.2	118	91	4	415	31	20	26	21	1.98
60897740--60898007	40	6.7	40	94	0	464	31	20	26	21	1.98
60901508--60901677	40	4.2	40	95	0	304	28	28	19	22	1.98
60910036--60910170	40	3.4	40	95	0	243	30	30	18	20	1.97
60912337--60912510	46	3.8	46	78	13	194	21	18	29	30	1.97
60912332--60912502	93	1.8	93	92	0	288	21	19	29	29	1.98
60917105--60917138	5	6.6	5	93	6	59	82	0	0	17	0.67
60917104--60917143	16	2.4	16	95	4	71	80	0	2	17	0.83
60919449--60919500	25	2.1	25	100	0	104	15	11	3	69	1.32
60921941--60922036	48	2.0	48	91	0	156	35	12	25	27	1.92
60923009--60923035	12	2.2	12	100	0	54	25	44	22	7	1.79
60923567--60923591	11	2.3	11	100	0	50	48	0	36	16	1.46
60936164--60936311	43	3.4	43	79	8	151	28	15	22	33	1.95
60944683--60944821	53	2.6	54	84	3	185	29	2	21	46	1.63
60944949--60945006	28	2.1	28	93	0	98	24	10	17	48	1.78
60948361--60948538	27	6.6	27	83	3	205	26	15	28	29	1.96
60948362--60948517	82	1.9	81	88	3	233	26	15	28	29	1.96
60948358--60948538	82	2.2	81	83	2	229	27	15	27	29	1.96
60956444--60956621	27	6.6	27	83	3	205	26	15	28	29	1.96
60956445--60956600	82	1.9	81	88	3	233	26	15	28	29	1.96
60956441--60956621	82	2.2	81	83	2	229	27	15	27	29	1.96
60965698--60965769	22	3.3	22	69	16	60	13	15	23	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60965695--60965855	43	3.7	44	75	10	143	15	14	23	45	1.83
60965709--60965808	22	4.5	23	69	19	77	13	16	25	46	1.82
60967188--60967248	25	2.4	25	88	2	86	47	3	11	37	1.56
60973969--60974090	55	2.2	54	82	5	138	17	25	29	27	1.97
60977792--60977829	14	2.9	13	81	11	51	57	10	13	18	1.63
60991142--60991343	30	6.9	29	78	12	191	48	13	17	20	1.81
60991163--60991343	85	2.1	85	95	0	326	48	13	17	20	1.81
60991163--60991324	6	26.8	6	76	15	156	48	14	16	20	1.80
60991699--60991757	22	2.7	22	81	0	64	32	22	25	20	1.98
60991844--60991925	27	3.1	26	80	5	92	36	20	21	20	1.95
60992125--60992319	27	7.3	27	82	3	214	27	19	17	35	1.95
60992127--60992311	80	2.3	80	86	2	246	27	20	17	35	1.94
60992141--60992347	107	1.9	107	80	5	240	28	18	18	34	1.95
60992178--60992347	80	2.1	79	79	8	184	30	18	17	34	1.94
60992324--60992678	27	13.2	27	86	4	493	40	9	23	27	1.85
61008849--61008913	30	2.2	30	97	0	121	23	35	24	16	1.95
61023361--61023536	46	3.8	46	76	12	189	19	19	30	30	1.97
61023358--61023529	93	1.8	93	92	0	290	20	20	30	29	1.97
61025869--61026232	47	7.7	47	94	0	604	32	8	30	28	1.87
61026351--61026429	37	2.1	37	90	0	122	24	18	31	25	1.98
61034900--61035027	46	2.8	46	93	0	211	20	21	29	28	1.98
61040962--61041134	46	3.7	46	79	10	190	22	20	26	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61040959--61041129	93	1.8	93	91	0	279	22	21	27	29	1.99
61048484--61048652	46	3.7	46	75	10	173	23	19	27	30	1.98
61065194--61065377	40	4.7	40	82	8	216	24	22	28	25	1.99
61073290--61073474	40	4.7	40	79	7	191	24	22	27	25	2.00
61073343--61073507	79	2.1	79	82	6	192	26	20	27	25	1.99
61081466--61081650	40	4.7	40	80	7	191	24	22	27	25	2.00
61081519--61081683	79	2.1	79	82	6	192	26	21	27	24	1.99
61084968--61085000	17	2.0	17	88	5	50	21	3	15	60	1.48
61098962--61099134	94	1.8	94	82	4	224	23	27	19	30	1.98
61099052--61099173	48	2.6	46	85	5	156	24	24	19	31	1.98
61098962--61099173	46	4.5	48	76	9	161	24	26	18	30	1.98
61114319--61114351	13	2.6	13	90	4	50	48	12	0	39	1.40
61119230--61119337	26	4.2	26	95	0	198	30	7	25	36	1.84
61120954--61121091	54	2.5	53	92	2	222	17	23	23	35	1.95
61120954--61121091	27	5.1	27	85	6	183	17	23	23	35	1.95
61125476--61126059	292	2.0	292	97	0	1098	35	10	20	32	1.88
61127840--61127871	16	2.0	16	100	0	64	37	18	12	31	1.88
61141396--61141453	29	2.0	29	100	0	116	31	17	10	41	1.83
61142158--61142280	46	2.6	47	81	10	133	27	22	13	36	1.91
61160541--61160618	25	2.9	27	77	11	79	53	5	6	34	1.48
61160682--61160725	23	2.0	21	82	8	52	56	4	6	31	1.46
61160811--61160907	45	2.2	44	80	12	108	54	7	3	35	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61160866--61160923	27	2.2	27	84	9	75	55	8	5	31	1.52
61160864--61160923	26	2.3	26	82	8	77	55	8	5	31	1.51
61164746--61164801	24	2.1	29	84	15	77	58	7	7	26	1.50
61165053--61165166	56	2.0	56	94	0	201	36	14	19	29	1.91
61166202--61166311	56	2.0	56	98	0	211	31	8	17	42	1.78
61171824--61171880	21	2.8	21	91	2	89	26	31	31	10	1.90
61173017--61173148	49	2.7	49	84	5	169	21	25	22	30	1.99
61176654--61176749	20	4.6	21	78	7	97	50	22	11	15	1.76
61176674--61176762	20	4.3	20	83	5	106	50	22	13	13	1.76
61176646--61176748	42	2.5	42	90	0	152	49	22	11	16	1.78
61183326--61183350	12	2.1	12	100	0	50	0	0	16	84	0.63
61190791--61190837	24	2.0	24	95	0	85	2	34	10	53	1.48
61193375--61193543	43	4.0	42	75	10	130	23	17	27	31	1.97
61193376--61193532	85	1.8	85	82	8	203	24	17	28	29	1.97
61202902--61203086	40	4.7	40	82	7	225	25	28	22	23	1.99
61202904--61203086	79	2.3	81	82	8	223	25	27	22	24	2.00
61211080--61211264	40	4.7	40	83	6	216	26	28	21	23	1.99
61211108--61211264	79	2.0	80	83	6	203	26	28	21	24	1.99
61223559--61223596	13	2.9	13	81	14	51	31	0	36	31	1.58
61223673--61223740	28	2.7	23	76	20	73	17	4	32	45	1.68
61223646--61223729	28	3.0	28	89	1	123	20	3	29	46	1.67
61223946--61224006	21	2.8	21	77	5	68	13	26	29	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61232578--61232706	38	3.4	38	86	0	186	21	20	24	33	1.97
61232556--61232716	38	4.2	38	83	2	144	24	20	24	30	1.99
61240657--61240785	38	3.4	38	84	4	170	22	20	24	32	1.98
61240644--61240787	76	1.9	76	86	2	209	22	21	24	31	1.98
61255265--61255569	40	7.7	40	95	2	544	29	20	28	22	1.98
61255265--61255569	118	2.6	119	95	3	560	29	20	28	22	1.98
61263884--61264191	40	7.7	40	97	0	562	28	20	28	22	1.98
61267754--61267786	14	2.4	14	94	0	57	18	24	6	51	1.68
61267766--61267953	93	2.0	93	86	2	259	23	16	17	42	1.88
61267795--61268176	87	4.3	87	75	11	296	25	15	20	37	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255