Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  55  of  255  ( 30512 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15621196--15621506
27
11.5
26
76
7
178
40
18
9
31
1.83
15621536--15621604
27
2.6
27
83
4
86
33
23
24
18
1.97
15621555--15621624
27
2.6
27
88
4
106
30
24
24
21
1.99
15622445--15622513
25
2.8
25
91
2
104
28
26
20
24
1.99
15622445--15622526
24
3.4
24
80
8
85
32
23
19
24
1.97
15622733--15622872
31
4.5
31
93
0
235
28
17
24
29
1.97
15623634--15623725
26
3.6
26
77
2
96
35
34
10
18
1.86
15623634--15623734
51
2.0
52
86
5
143
34
34
12
17
1.88
15623631--15623741
26
4.3
26
74
8
93
33
35
13
18
1.89
15625714--15625757
9
4.7
9
78
10
52
54
11
0
34
1.36
15626683--15626751
2
34.5
2
100
0
138
0
0
49
50
1.00
15628547--15628643
33
2.8
35
72
20
89
50
1
3
45
1.24
15633849--15633916
34
2.0
34
82
0
82
23
20
22
33
1.97
15635264--15635348
41
2.1
41
95
0
152
40
9
14
36
1.78
15636539--15636647
28
3.9
28
88
0
146
23
12
33
29
1.92
15641354--15641470
47
2.5
47
82
1
135
23
12
28
35
1.91
15662592--15662709
59
2.0
59
100
0
236
28
16
20
33
1.95
15662928--15663038
27
4.0
28
80
5
97
36
13
21
27
1.91
15662964--15663052
27
3.3
27
83
1
106
31
13
23
31
1.93
15662930--15663052
54
2.2
55
84
5
151
35
13
21
28
1.92
15664688--15665058
53
7.0
53
80
4
363
42
11
21
24
1.86
15664688--15665058
159
2.3
159
82
1
431
42
11
21
24
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15670820--15670855
10
3.7
10
88
7
56
8
13
0
77
0.98
15672307--15672337
6
5.3
6
96
3
55
16
12
0
70
1.16
15673435--15673468
15
2.3
15
89
0
50
17
14
8
58
1.61
15678796--15678843
24
2.0
23
84
4
60
70
0
18
10
1.15
15680072--15680252
86
2.1
87
90
1
292
27
23
22
26
1.99
15680243--15680533
95
3.0
95
91
2
492
30
18
22
28
1.97
15680500--15680732
46
5.2
46
69
11
158
26
19
22
31
1.98
15680435--15680758
134
2.4
135
92
3
537
28
19
22
29
1.98
15680443--15680806
134
2.7
132
89
5
459
29
19
22
29
1.98
15680808--15680919
40
2.8
40
85
9
138
32
25
20
22
1.98
15681655--15681685
6
5.3
6
96
3
55
16
12
0
70
1.16
15682785--15682818
15
2.3
15
89
0
50
17
14
8
58
1.61
15701000--15701033
15
2.3
15
89
0
50
58
8
14
17
1.61
15702128--15702158
6
5.3
6
96
3
55
70
0
12
16
1.16
15702891--15703002
42
2.7
42
86
6
149
22
21
25
31
1.98
15703113--15703306
46
4.3
46
68
12
159
31
23
18
25
1.97
15703051--15703366
134
2.3
135
93
2
537
29
22
19
28
1.98
15703276--15703566
95
3.0
95
92
2
501
28
22
18
30
1.97
15703557--15703737
86
2.1
87
89
1
274
28
21
22
28
1.99
15704965--15705012
23
2.0
23
84
4
60
10
18
0
70
1.15
15710344--15710377
15
2.3
15
89
0
50
58
8
14
17
1.61
15711477--15711507
6
5.3
6
96
3
55
70
0
12
16
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15712243--15712354
40
2.7
41
85
9
140
22
20
25
32
1.98
15712466--15712659
46
4.3
46
68
12
159
31
23
18
25
1.97
15712404--15712719
134
2.3
135
93
2
537
29
22
19
27
1.98
15712629--15712919
95
3.0
95
91
2
492
28
22
18
30
1.97
15712910--15713086
86
2.0
87
91
1
284
26
23
23
27
2.00
15712941--15713082
44
3.3
43
68
18
114
28
22
24
24
2.00
15714318--15714365
23
2.0
23
84
4
60
10
18
0
70
1.15
15729236--15729333
24
4.0
24
91
1
151
36
5
37
20
1.75
15731019--15731188
46
3.7
46
72
17
163
22
18
27
31
1.97
15731013--15731182
93
1.8
93
92
2
288
22
18
28
31
1.97
15735599--15735644
25
1.9
24
82
8
58
43
13
13
30
1.81
15748988--15749511
44
11.9
44
78
5
515
30
25
16
27
1.96
15748981--15749516
132
4.1
132
97
0
1009
30
25
15
28
1.96
15763613--15763657
23
2.0
23
86
8
65
37
0
0
62
0.96
15767533--15767597
20
3.3
19
74
16
60
20
1
7
70
1.19
15773427--15773452
7
3.7
7
100
0
52
84
0
15
0
0.62
15776349--15776459
54
2.1
54
100
0
222
32
12
13
41
1.82
15776372--15776460
26
3.2
30
60
18
73
31
13
11
43
1.79
15781039--15781115
29
2.6
29
77
6
84
29
7
10
51
1.64
15782469--15782520
15
3.2
15
73
19
50
44
0
1
53
1.11
15782560--15782595
19
1.9
18
88
5
54
63
0
0
36
0.94
15783813--15783871
21
2.8
21
78
12
59
69
8
0
22
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15783918--15783950
15
2.1
16
88
11
50
69
0
0
30
0.88
15787299--15787368
20
3.5
20
77
14
72
20
28
21
30
1.98
15787296--15787386
40
2.3
40
82
0
110
15
31
21
30
1.94
15788223--15788272
21
2.4
21
93
0
91
20
32
24
24
1.98
15789388--15789420
11
2.9
12
86
13
52
33
0
0
66
0.92
15789421--15789460
18
2.2
18
86
8
55
67
12
0
20
1.22
15793618--15793710
38
2.5
37
80
1
87
32
15
22
30
1.94
15798187--15798222
5
7.0
5
93
6
63
80
0
0
19
0.71
15798188--15798223
11
3.4
11
96
3
65
83
0
0
16
0.65
15807030--15807060
15
2.1
15
100
0
62
67
0
6
25
1.14
15808193--15808243
22
2.3
22
89
0
75
33
1
15
49
1.56
15811977--15812021
22
2.0
22
91
0
72
33
2
15
48
1.57
15817632--15817691
24
2.5
24
83
5
68
38
5
36
20
1.74
15826094--15826135
20
2.2
19
87
12
59
16
21
4
57
1.58
15826780--15826999
25
8.8
25
84
5
234
28
22
21
27
1.99
15826780--15826996
50
4.3
50
86
2
301
28
23
21
27
1.99
15826780--15826999
75
2.9
74
86
2
305
28
22
21
27
1.99
15827988--15828023
19
1.9
19
88
5
56
52
0
0
47
1.00
15829065--15829093
15
1.9
15
100
0
58
55
6
3
34
1.44
15830141--15830184
24
1.9
24
86
9
65
45
18
4
31
1.69
15836803--15836834
16
1.9
17
93
6
57
53
0
0
46
1.00
15846523--15846575
22
2.4
22
84
6
63
49
16
13
20
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15847077--15848667
541
2.9
541
94
1
2771
37
14
19
28
1.91
15847077--15848667
539
2.9
540
94
1
2767
37
14
19
28
1.91
15854597--15854692
46
2.1
46
90
3
149
32
12
11
43
1.78
15870783--15870809
5
5.4
5
100
0
54
40
0
0
59
0.98
15872217--15872284
23
3.0
23
73
16
68
41
17
20
20
1.91
15873775--15873827
3
18.0
3
79
11
56
32
0
5
62
1.19
15873772--15873843
32
2.2
33
78
16
78
34
0
6
58
1.25
15881298--15881359
3
21.0
3
82
9
74
32
0
4
62
1.16
15887609--15887670
3
21.0
3
82
9
74
32
0
4
62
1.16
15893923--15893978
3
19.0
3
80
10
62
32
0
5
62
1.18
15894306--15894346
22
1.9
21
85
14
57
73
2
12
12
1.20
15896788--15897064
68
4.1
68
85
1
358
36
16
22
24
1.94
15900761--15900792
16
1.9
17
93
6
57
40
15
0
43
1.47
15903591--15903641
26
2.0
26
92
0
84
41
9
5
43
1.62
15920296--15920346
26
2.0
26
96
0
93
41
11
1
45
1.52
15922405--15922455
26
2.0
26
96
0
93
41
11
1
45
1.52
15924511--15924561
26
2.0
26
96
0
93
41
11
1
45
1.52
15926620--15926670
26
2.0
26
96
0
93
41
11
1
45
1.52
15928729--15928779
26
2.0
26
96
0
93
41
11
1
45
1.52
15936201--15936416
46
4.7
46
81
5
265
21
20
29
28
1.98
15936191--15936416
93
2.4
94
86
3
289
22
20
28
27
1.99
15943148--15943199
26
2.0
26
96
0
95
40
11
5
42
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15945784--15945898
57
2.1
54
85
8
151
17
23
22
36
1.95
15945784--15945898
28
4.1
27
85
8
142
17
23
22
36
1.95
15949733--15949909
27
6.5
27
84
3
203
29
27
15
27
1.96
15949753--15949908
82
1.9
81
88
3
233
29
28
15
26
1.96
15966460--15966493
7
5.1
7
92
7
54
23
0
0
76
0.79
15966458--15966496
6
6.3
6
88
11
53
20
0
0
79
0.73
15968400--15968448
25
1.9
26
91
4
82
38
12
2
46
1.53
15970497--15970545
25
2.0
25
95
0
89
38
12
2
46
1.53
15972595--15972644
26
1.9
26
95
0
91
38
14
2
46
1.56
15974697--15974748
26
2.0
26
92
0
86
40
13
5
40
1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255