Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  17  of  255  ( 30512 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4570741--4570769
15
2.0
15
93
6
51
27
0
0
72
0.85
4571435--4571506
35
2.1
35
100
0
144
30
9
16
43
1.80
4576273--4576364
39
2.3
39
78
15
100
36
20
20
21
1.95
4577082--4577122
21
1.9
22
90
5
66
21
0
36
41
1.54
4577186--4577225
21
1.9
21
84
0
53
22
0
20
57
1.41
4577419--4577471
21
2.5
22
84
3
63
18
0
35
45
1.50
4576979--4577539
287
2.0
284
79
9
620
27
3
24
45
1.68
4577520--4577597
7
11.0
7
78
6
68
12
0
41
46
1.42
4577520--4577597
14
5.5
14
80
4
77
12
0
41
46
1.42
4577841--4577877
13
2.7
14
91
8
67
43
0
5
51
1.24
4581895--4581940
12
3.5
12
81
18
56
34
0
0
65
0.93
4582012--4582046
13
2.6
13
90
4
52
51
8
2
37
1.47
4581971--4582136
56
3.0
56
78
13
209
50
14
0
34
1.47
4582044--4582210
9
19.0
9
70
14
73
45
19
1
34
1.58
4582052--4582162
43
2.6
43
86
1
168
46
18
0
34
1.50
4582025--4582155
43
2.7
49
77
17
157
47
17
0
35
1.48
4582107--4582193
36
2.5
36
88
3
133
47
18
1
33
1.56
4584169--4584197
14
2.1
14
93
6
51
34
0
6
58
1.25
4584606--4584636
15
2.0
16
93
6
55
32
16
51
0
1.44
4584615--4584662
21
2.3
20
92
3
78
29
20
47
2
1.61
4596498--4596569
22
3.3
23
88
5
105
63
27
4
4
1.31
4596798--4596836
1
39.0
1
89
0
60
2
0
2
94
0.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4596798--4596836
20
2.0
20
94
0
69
2
0
2
94
0.34
4597065--4597119
26
2.1
27
86
3
76
30
9
7
52
1.60
4597300--4597342
23
2.0
23
86
9
63
27
13
6
51
1.67
4597593--4597693
1
101.0
1
74
0
76
10
2
0
86
0.68
4597592--4597693
40
2.6
39
87
4
143
11
2
0
85
0.71
4597635--4597685
27
1.9
26
96
4
93
5
3
0
90
0.56
4597594--4597702
11
10.3
11
75
15
88
12
2
0
84
0.73
4599102--4599136
12
3.0
12
91
4
54
28
25
5
40
1.78
4607504--4607694
72
2.6
72
81
5
224
27
14
22
35
1.93
4607719--4608050
88
3.8
88
88
2
486
25
18
21
34
1.96
4607963--4608737
75
9.7
75
67
19
252
28
18
20
32
1.96
4607962--4608121
73
2.1
74
87
3
232
27
19
21
31
1.97
4608126--4608737
75
7.7
76
70
16
282
28
18
20
32
1.96
4608312--4608979
75
8.5
74
72
14
324
29
16
19
34
1.94
4607895--4608817
319
2.9
313
85
8
1114
28
18
20
32
1.96
4608626--4609181
76
6.9
76
68
17
228
28
16
18
36
1.93
4608961--4609021
30
2.0
30
90
6
97
19
9
27
42
1.83
4608385--4609189
249
3.3
242
81
6
759
28
16
18
36
1.93
4609847--4609947
27
4.0
26
91
7
163
73
18
3
3
1.15
4609844--4609947
25
4.2
24
88
11
156
74
18
3
3
1.13
4609844--4609947
24
4.2
25
90
7
167
74
18
3
3
1.13
4633760--4633795
17
2.1
18
89
5
56
27
2
0
69
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4635767--4635819
27
2.0
27
85
10
74
41
5
7
45
1.56
4636819--4636888
20
3.7
20
70
19
53
58
2
1
37
1.22
4636772--4636923
19
8.5
17
70
21
73
58
2
2
36
1.26
4636763--4636924
9
17.8
9
71
16
86
59
2
3
35
1.26
4636988--4637023
18
1.9
19
88
5
56
69
2
2
25
1.15
4637468--4637654
10
19.3
9
68
18
67
31
2
3
62
1.27
4637496--4637539
21
2.0
22
86
4
63
25
2
4
68
1.20
4637496--4637654
10
16.2
10
69
20
70
30
1
3
63
1.23
4637496--4637599
30
3.5
31
74
18
87
32
0
3
62
1.20
4637586--4637662
37
2.1
35
81
9
84
24
3
2
68
1.19
4641622--4641653
15
2.1
15
94
0
55
12
9
9
68
1.39
4648110--4648224
59
1.9
60
96
1
214
35
11
10
42
1.75
4652914--4652974
25
2.4
25
100
0
122
49
0
6
44
1.28
4664428--4664602
46
3.8
46
79
0
118
42
14
21
21
1.89
4664481--4664683
46
4.5
45
81
8
225
43
13
22
20
1.86
4664484--4664683
90
2.2
92
86
3
271
43
13
22
20
1.87
4666483--4666559
31
2.5
31
80
4
84
33
0
5
61
1.19
4670187--4670305
15
8.1
15
73
15
74
65
0
6
26
1.23
4670200--4670321
29
4.2
29
72
9
97
63
1
7
27
1.30
4671204--4671355
44
3.5
43
72
16
141
22
21
23
32
1.98
4671201--4671679
88
5.4
87
89
3
692
23
22
20
32
1.97
4671248--4671663
44
9.4
44
66
15
207
23
23
20
32
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4671201--4671679
177
2.7
177
89
2
716
23
22
20
32
1.97
4671201--4671679
265
1.8
265
89
2
766
23
22
20
32
1.97
4671201--4671685
44
11.0
43
63
15
125
23
23
20
33
1.97
4671657--4671931
133
2.1
133
90
0
433
28
21
20
30
1.98
4671767--4672935
178
6.4
178
80
7
1316
28
23
18
30
1.97
4671991--4672085
44
2.2
45
79
7
106
23
25
21
30
1.99
4672113--4672160
22
2.2
22
88
7
71
20
31
14
33
1.93
4671936--4672336
200
2.0
200
90
1
635
27
23
17
31
1.97
4671767--4672935
378
3.2
369
84
7
1484
28
23
18
30
1.97
4672456--4672552
45
2.2
44
87
7
133
26
20
18
34
1.96
4679746--4679791
15
2.9
15
90
6
65
67
0
6
26
1.15
4679759--4679875
29
4.0
29
69
8
85
63
1
7
27
1.31
4679740--4679826
44
2.0
44
82
13
108
65
0
8
26
1.20
4679738--4679854
15
8.1
14
71
18
62
64
0
7
26
1.26
4704447--4704615
84
2.0
84
100
0
338
46
21
11
20
1.82
4706301--4706497
3
67.7
3
67
19
80
28
7
2
61
1.37
4706400--4706474
11
6.8
11
80
7
64
30
1
4
64
1.20
4706399--4706478
22
3.6
22
77
12
76
28
2
3
65
1.23
4706655--4706713
27
2.2
27
87
6
84
28
5
6
59
1.45
4708151--4708191
17
2.4
17
95
0
73
14
14
17
53
1.73
4720407--4720926
44
11.7
43
67
15
188
30
15
26
27
1.96
4720406--4721000
177
3.4
177
84
3
718
30
16
25
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4720835--4721133
133
2.2
134
83
8
362
29
18
25
26
1.98
4723346--4723414
20
3.5
20
82
7
77
10
39
2
47
1.52
4726836--4726866
7
4.4
7
100
0
62
51
0
0
48
1.00
4737677--4737723
20
2.3
21
81
7
60
36
6
2
55
1.37
4741540--4741588
25
2.0
25
100
0
98
22
12
0
65
1.26
4742266--4742315
26
1.9
26
88
8
75
34
0
2
64
1.05
4742264--4742316
22
2.4
22
78
15
63
33
0
1
64
1.05
4742267--4742323
26
2.2
26
81
12
64
33
3
1
61
1.23
4742354--4742396
12
3.7
12
90
3
70
32
2
0
65
1.06
4744639--4744704
33
2.0
33
96
0
123
48
13
9
28
1.73
4745955--4746297
182
1.9
179
85
4
474
32
11
20
35
1.89
4746398--4746461
21
3.3
21
66
20
66
31
9
14
45
1.76
4746387--4746461
37
2.0
37
100
0
150
29
10
16
44
1.81
4747594--4747688
47
2.0
47
82
8
113
32
9
6
51
1.59
4749062--4749615
285
2.0
278
84
6
690
33
13
16
36
1.88
4749952--4750027
11
6.8
11
72
21
52
42
1
1
55
1.16
4749969--4750094
20
7.3
18
68
24
69
43
1
4
50
1.33
4758388--4758465
39
2.0
39
94
0
138
14
24
11
50
1.75
4761246--4761295
14
3.6
14
78
10
50
56
2
8
34
1.40
4761655--4761869
73
2.9
73
83
1
279
17
18
17
46
1.85
4761728--4761846
37
3.2
38
71
16
106
16
16
17
48
1.81
4761714--4761830
36
3.2
35
69
15
85
20
16
18
44
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4762257--4762296
20
2.0
20
85
0
53
65
2
7
25
1.32
4762340--4762424
17
5.0
16
78
19
59
62
2
2
32
1.21
4762351--4762424
8
8.8
8
79
8
76
66
1
1
31
1.09
4762351--4762425
25
3.0
25
82
2
87
66
1
1
30
1.08
4762338--4762423
33
2.5
35
85
9
106
62
2
2
32
1.20
4763302--4763354
21
2.4
22
78
9
54
64
0
7
28
1.21
4764377--4764410
18
1.9
17
88
5
50
11
8
5
73
1.24
4771412--4771603
98
1.9
99
86
1
269
30
15
22
31
1.95
4777841--4777989
74
2.0
74
100
0
298
34
24
8
33
1.85
4783527--4783782
51
5.0
51
95
2
453
44
17
8
28
1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255