genome.fa.s4.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  147  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47529463--47529671	40	5.3	40	87	1	269	24	30	21	23	1.99
47529463--47529671	79	2.6	79	89	2	312	24	30	21	23	1.99
47529463--47529722	79	3.3	79	84	5	251	24	29	21	24	1.99
47530804--47530913	51	2.1	55	93	6	192	22	24	8	44	1.80
47553316--47553452	57	2.4	57	86	0	193	32	20	18	27	1.96
47553357--47553470	57	2.0	57	82	3	140	34	21	16	27	1.95
47556707--47556760	26	2.0	27	96	3	101	22	22	7	48	1.75
47556666--47556799	72	1.9	72	90	3	216	20	23	12	44	1.85
47556734--47556901	46	3.7	46	92	0	275	23	23	11	40	1.88
47567652--47567676	13	1.9	13	100	0	50	24	32	24	20	1.98
47586107--47586289	40	4.6	40	83	6	221	24	28	22	24	1.99
47586109--47586289	79	2.3	80	82	7	217	24	28	22	24	2.00
47588497--47588624	35	3.5	36	77	19	140	32	22	11	32	1.90
47593403--47593478	38	2.0	38	97	0	143	32	13	22	31	1.92
47594665--47594809	40	3.6	40	85	4	193	25	24	26	23	2.00
47606185--47606420	40	6.0	40	89	4	322	23	22	27	26	2.00
47606185--47606420	117	2.0	119	85	7	320	23	22	27	26	2.00
47620089--47620132	22	2.0	22	100	0	88	36	13	27	22	1.92
47624185--47624262	29	2.7	29	86	6	104	26	33	15	24	1.95
47626546--47626681	69	2.0	69	100	0	272	32	11	23	32	1.91
47636888--47636960	29	2.5	29	86	4	94	27	16	30	26	1.97
47638916--47639093	27	6.6	27	81	5	171	28	28	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47638937--47639092	82	1.9	81	86	3	224	28	28	16	26	1.97
47654463--47654765	40	7.6	40	89	2	387	27	28	20	24	1.99
47657445--47657480	16	2.3	15	86	9	54	30	8	11	50	1.67
47658439--47658550	27	4.2	26	83	7	125	35	23	24	16	1.95
47667339--47667395	29	2.0	28	83	12	73	33	5	26	35	1.79
47674216--47674387	46	3.7	46	77	14	183	28	27	21	22	1.99
47674221--47674391	93	1.8	93	91	2	281	28	28	21	22	1.99
47674811--47674870	30	2.0	30	87	6	86	31	25	6	36	1.82
47677025--47677097	36	2.0	36	100	0	146	34	24	2	38	1.70
47677788--47677831	19	2.4	18	84	3	52	47	9	2	40	1.48
47703970--47704015	22	2.0	22	83	4	56	23	17	23	34	1.96
47704892--47704919	13	2.2	13	100	0	56	50	0	7	42	1.30
47727808--47727859	27	1.9	27	84	0	68	28	21	38	11	1.88
47727956--47728007	5	10.8	5	86	12	56	67	0	32	0	0.91
47727967--47728010	18	2.4	19	92	3	72	72	0	27	0	0.85
47727995--47728078	41	2.0	41	95	0	150	42	4	11	40	1.63
47728120--47728164	23	2.0	23	86	0	63	17	0	15	66	1.25
47728218--47728269	27	1.9	27	96	0	95	42	1	15	40	1.58
47733855--47733901	22	2.1	22	100	0	94	46	17	0	36	1.48
47735407--47735516	43	2.5	42	78	8	114	29	25	19	26	1.98
47738848--47738959	37	3.0	37	94	0	188	27	30	16	25	1.97
47739163--47739604	47	9.1	47	85	7	587	26	29	12	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47739163--47739604	149	3.0	141	84	8	605	26	29	12	31	1.93
47739163--47739604	98	4.5	98	92	3	712	26	29	12	31	1.93
47746023--47746174	32	4.7	33	78	6	112	34	11	23	29	1.91
47747128--47747160	13	2.5	14	85	14	52	3	27	39	30	1.72
47749191--47749435	40	6.2	40	89	2	352	25	27	22	24	2.00
47751504--47751550	21	2.2	21	100	0	94	38	12	27	21	1.90
47758723--47758754	12	2.7	12	100	0	64	6	34	28	31	1.82
47761147--47761249	37	2.8	37	96	0	188	24	32	20	23	1.98
47761381--47761730	48	7.0	54	84	11	322	30	29	6	32	1.84
47761422--47761730	48	6.4	48	94	0	537	30	28	7	33	1.84
47767590--47767806	46	4.8	45	83	4	240	24	29	20	25	1.99
47767590--47767811	93	2.4	90	82	6	261	25	29	20	24	1.99
47770723--47770894	93	1.8	93	93	0	299	27	30	20	20	1.98
47770716--47770891	46	3.8	46	78	10	196	28	30	20	20	1.98
47770724--47770910	46	4.0	46	71	19	129	28	29	20	21	1.98
47773289--47773357	15	4.6	15	85	0	93	56	13	18	11	1.66
47773278--47773366	30	3.0	30	81	1	99	56	15	17	10	1.67
47773289--47773366	15	5.2	15	77	9	70	55	15	17	11	1.69
47776291--47776462	93	1.8	93	91	0	281	27	29	20	22	1.98
47776284--47776453	46	3.7	44	77	10	180	29	30	19	20	1.97
47778671--47778714	18	2.4	18	84	0	61	52	11	15	20	1.74
47778863--47778942	26	3.0	27	82	10	94	38	21	22	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47779563--47779811	27	9.3	27	83	4	261	24	19	18	36	1.95
47779597--47779835	81	3.0	81	82	3	214	25	18	18	37	1.93
47779799--47779977	27	6.7	27	80	6	186	31	10	17	40	1.83
47779797--47779936	53	2.6	53	89	0	217	32	10	16	40	1.82
47779795--47779998	80	2.6	78	81	9	232	30	9	20	39	1.85
47779795--47779998	27	7.7	26	78	7	178	30	9	20	39	1.85
47781935--47781968	18	1.9	17	88	5	50	52	11	11	23	1.70
47781959--47781993	18	1.9	18	100	0	70	57	5	14	22	1.59
47781977--47782039	25	2.5	25	89	0	99	47	11	19	22	1.80
47782185--47782240	26	2.1	27	83	3	69	39	25	23	12	1.89
47782399--47782464	22	3.0	22	73	8	71	34	21	22	21	1.96
47782745--47782998	27	9.4	27	82	3	228	24	19	18	37	1.94
47782745--47782994	54	4.6	54	78	3	252	24	19	18	37	1.94
47782746--47782994	81	3.1	81	86	0	327	24	19	18	37	1.94
47782980--47783160	27	6.8	27	72	8	129	33	9	17	38	1.83
47782845--47783071	54	4.2	54	74	9	144	26	15	18	39	1.90
47782980--47783107	53	2.4	53	84	0	166	35	10	14	39	1.82
47782978--47783172	80	2.4	79	83	5	223	32	10	18	38	1.85
47783005--47783119	53	2.2	52	79	3	122	37	11	13	37	1.81
47789214--47789304	46	2.0	46	86	0	128	27	31	6	34	1.83
47789318--47789609	47	6.2	47	90	0	440	26	28	11	33	1.91
47789284--47789609	94	3.5	94	90	0	465	25	29	11	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47789284--47789609	141	2.3	140	86	2	454	25	29	11	33	1.91
47792552--47792671	43	2.8	42	79	12	127	30	28	16	24	1.96
47798732--47798774	18	2.4	18	81	11	54	34	4	23	37	1.76
47818278--47818314	16	2.3	16	95	0	65	45	13	24	16	1.83
47818530--47818615	29	3.0	30	85	12	112	25	15	32	26	1.95
47818530--47818615	28	3.0	28	83	12	106	25	15	32	26	1.95
47825040--47825089	15	3.4	15	86	2	66	60	12	18	10	1.59
47825051--47825098	15	3.2	15	79	5	53	56	14	16	12	1.68
47839917--47839942	13	2.0	13	100	0	52	15	30	38	15	1.88
47844597--47844723	64	2.0	64	95	0	227	40	6	7	45	1.58
47845208--47845276	33	2.1	33	86	0	93	23	17	39	20	1.92
47848373--47848446	29	2.6	29	86	4	96	25	31	16	27	1.96
47850739--47850983	40	6.2	40	93	2	388	25	28	22	23	1.99
47855051--47855083	3	11.7	3	87	12	52	0	33	0	66	0.92
47855051--47855083	8	3.9	9	88	11	52	0	33	0	66	0.92
47856594--47856851	40	6.5	40	88	2	342	27	27	21	23	1.99
47861926--47861978	27	2.0	27	84	0	70	41	9	9	39	1.70
47868890--47869009	46	2.6	46	85	5	152	27	20	28	23	1.99
47868892--47869157	49	5.6	47	76	10	190	26	20	28	24	1.99
47868892--47869149	142	1.8	138	82	9	326	27	19	29	24	1.99
47877466--47877838	48	7.8	48	91	0	575	34	6	26	32	1.83
47879899--47880196	40	7.4	40	90	0	443	23	21	29	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47880372--47880422	25	2.0	25	81	7	59	33	13	31	21	1.92
47882810--47882994	40	4.7	40	81	7	209	24	21	27	26	1.99
47882811--47883017	79	2.6	79	74	12	192	26	20	26	26	1.99
47890892--47891074	39	4.6	39	83	6	219	24	21	28	26	1.99
47890893--47891107	79	2.7	77	79	11	240	25	20	27	25	1.99
47894623--47894995	48	7.8	48	92	0	593	34	6	27	31	1.82
47895039--47895141	37	2.8	37	93	0	179	23	19	33	24	1.97
47896748--47896802	25	2.2	25	90	6	85	27	30	14	27	1.95
47896966--47897365	40	10.0	40	92	0	640	27	30	22	20	1.98
47897626--47897650	12	2.1	12	100	0	50	44	8	8	40	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255