genome.fa.s4.2.7.7.80.10.50.1000.221.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  221  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73466414--73466687	44	6.1	45	72	9	159	30	16	24	29	1.96
73466414--73466689	134	2.1	134	90	0	435	30	16	24	28	1.96
73466421--73466617	44	4.4	45	73	11	170	30	18	22	27	1.97
73467131--73467293	19	8.8	19	85	6	228	36	11	16	36	1.84
73467131--73467300	54	3.1	55	88	5	238	36	10	17	35	1.84
73469033--73469136	45	2.3	45	80	3	111	25	25	17	31	1.97
73469101--73469204	43	2.4	46	76	15	121	28	18	19	33	1.95
73470448--73470532	30	2.8	30	89	5	118	36	5	10	47	1.63
73470501--73470552	20	2.6	20	78	6	52	34	3	11	50	1.57
73470822--73470856	18	1.9	18	94	0	61	42	2	2	51	1.31
73475307--73475332	13	2.0	13	100	0	52	46	15	15	23	1.83
73482396--73482573	27	6.6	27	84	3	205	29	28	15	26	1.96
73482417--73482572	82	1.9	81	88	3	233	29	28	15	26	1.96
73489964--73490073	27	4.1	27	80	8	125	39	21	22	16	1.92
73489966--73490072	54	2.0	54	85	3	144	39	20	23	16	1.92
73494782--73494826	22	2.0	22	100	0	90	26	26	13	33	1.93
73504279--73504356	41	1.9	41	84	5	104	12	24	33	29	1.92
73508137--73508182	21	2.2	21	88	3	67	67	0	0	32	0.91
73510303--73510366	17	3.6	17	84	16	85	35	14	10	39	1.81
73510303--73510374	35	2.0	37	89	8	112	36	15	9	38	1.80
73510335--73510372	17	2.5	15	87	12	51	34	15	10	39	1.82
73510728--73510863	45	3.0	45	82	2	148	26	29	13	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73510893--73511186	78	3.8	78	89	3	441	24	22	19	34	1.97
73516999--73517058	30	2.0	30	83	6	77	36	6	26	30	1.82
73517481--73517609	47	2.8	47	90	1	197	20	20	27	31	1.98
73522577--73522611	19	1.9	19	88	11	56	68	0	0	31	0.90
73522903--73522974	19	3.9	19	85	10	114	37	15	9	37	1.80
73522903--73522965	17	3.5	17	89	4	81	38	14	9	38	1.78
73522896--73522974	35	2.2	37	84	13	112	36	16	8	37	1.80
73522935--73522972	17	2.5	15	87	12	51	34	15	10	39	1.82
73523780--73523821	16	2.7	16	78	14	52	42	0	0	57	0.99
73525118--73525179	23	2.8	22	74	16	74	14	20	25	38	1.91
73526902--73526962	30	2.0	30	96	0	113	21	19	1	57	1.49
73536881--73536925	22	2.0	22	100	0	90	31	26	8	33	1.87
73544830--73544880	24	2.1	23	86	13	68	43	23	9	23	1.83
73545671--73545746	12	6.3	12	79	8	66	31	1	2	64	1.15
73545822--73545891	16	4.2	16	69	15	52	37	1	2	58	1.22
73545963--73545995	14	2.4	14	90	10	50	30	3	3	63	1.24
73546089--73546163	29	2.5	31	84	6	91	36	4	5	54	1.42
73548390--73548429	19	2.0	20	86	13	57	77	2	5	15	1.04
73548666--73548705	18	2.4	16	91	8	62	5	10	0	85	0.75
73551246--73551318	26	2.8	27	79	6	78	24	13	28	32	1.94
73553898--73553928	13	2.4	13	94	0	53	22	3	0	74	0.96
73555225--73555259	18	1.9	18	88	0	52	45	8	0	45	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73555277--73555361	13	6.1	13	74	12	71	31	1	1	65	1.07
73555267--73555388	46	2.5	49	72	17	121	38	0	2	58	1.17
73560694--73560760	33	2.0	33	97	0	125	23	19	14	41	1.89
73564833--73564921	46	2.0	45	91	6	144	47	7	15	29	1.74
73565767--73565811	19	2.3	20	78	17	51	42	4	6	46	1.50
73566188--73566219	15	2.1	15	94	0	55	65	0	6	28	1.16
73566194--73566276	39	2.2	39	93	4	143	56	0	2	40	1.12
73568643--73568716	39	1.9	39	88	2	114	24	10	12	52	1.70
73569806--73570242	106	4.2	106	90	5	685	34	6	4	54	1.47
73570273--73570313	19	2.2	18	83	12	55	43	14	4	36	1.67
73570348--73570755	74	5.5	74	93	0	683	45	14	3	37	1.62
73576178--73576235	21	2.8	21	81	0	71	29	18	48	3	1.65
73578134--73578166	6	5.3	6	96	3	57	81	0	0	18	0.68
73580485--73580738	127	2.0	127	90	0	400	44	13	6	35	1.71
73581797--73581860	10	6.1	10	74	18	51	34	6	3	56	1.40
73583967--73584010	23	2.0	23	86	8	65	36	0	0	63	0.95
73584538--73584566	7	4.1	7	100	0	58	58	13	13	13	1.63
73584588--73584655	34	2.0	34	100	0	136	50	14	11	23	1.76
73584593--73584666	34	2.2	34	90	0	112	47	20	8	24	1.77
73584796--73584838	21	2.0	21	100	0	86	27	37	0	34	1.57
73584891--73585100	104	2.0	104	100	0	420	27	32	19	20	1.97
73589712--73589763	22	2.4	22	96	0	95	28	32	13	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73604028--73604088	31	2.0	31	100	0	122	37	6	16	39	1.75
73604349--73604394	22	2.1	22	100	0	92	45	0	17	36	1.49
73607799--73607875	34	2.3	33	84	8	102	25	2	2	68	1.15
73607822--73607876	16	3.3	17	80	10	60	21	3	3	70	1.18
73607816--73607876	17	3.6	17	75	18	56	22	3	3	70	1.17
73623292--73623725	178	2.4	178	86	2	577	27	17	26	28	1.98
73625530--73625578	26	1.9	25	87	4	71	36	6	0	57	1.24
73628938--73629033	23	4.2	23	75	16	83	41	20	20	16	1.90
73629836--73629860	13	1.9	13	100	0	50	68	0	0	32	0.90
73631468--73631500	16	2.1	16	94	0	57	39	9	18	33	1.82
73639116--73639194	32	2.5	32	91	4	126	21	11	21	45	1.83
73640330--73640380	22	2.3	22	96	0	93	29	9	13	47	1.75
73647304--73647449	27	5.4	27	89	0	211	28	22	8	41	1.82
73647439--73647522	27	3.1	27	86	1	89	41	23	5	28	1.78
73647281--73647488	54	3.9	54	81	0	166	33	21	7	37	1.82
73647448--73647667	27	8.1	27	76	10	135	40	18	8	32	1.80
73647452--73647659	54	3.8	55	76	7	183	42	19	7	30	1.79
73648590--73648659	25	2.8	26	89	4	99	25	25	22	25	2.00
73648615--73648686	25	3.0	24	80	13	76	29	22	22	26	1.99
73648811--73648898	42	2.1	42	93	0	149	29	18	21	30	1.97
73648922--73649036	31	3.7	31	92	1	196	27	16	26	29	1.97
73656762--73656907	57	2.6	57	83	0	175	26	22	12	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73659104--73659141	18	2.1	19	90	5	60	42	10	7	39	1.69
73664923--73665156	43	5.5	43	86	0	281	26	27	18	26	1.98
73664923--73665156	129	1.8	128	84	2	317	26	27	18	26	1.98
73665177--73665219	22	1.9	23	85	4	61	37	0	4	58	1.19
73668266--73668311	23	2.0	23	91	8	76	34	30	6	28	1.82
73670425--73670562	7	19.1	7	68	11	55	39	38	0	21	1.58
73670469--73670528	22	2.7	22	79	10	68	41	38	0	20	1.52
73670521--73670566	22	2.1	21	88	4	65	43	34	0	21	1.53
73673690--73673893	40	5.3	39	88	8	278	25	26	21	25	2.00
73673690--73673893	79	2.7	75	84	11	258	25	26	21	25	2.00
73690618--73690767	40	3.8	40	87	5	207	26	22	26	25	2.00
73690618--73690767	79	1.9	80	85	9	209	26	22	26	25	2.00
73690618--73690800	79	2.3	79	80	9	196	27	21	26	24	1.99
73695015--73695234	51	4.4	51	85	5	263	28	12	30	28	1.93
73695010--73695234	101	2.2	101	80	9	264	28	12	29	28	1.93
73698542--73698764	40	5.6	40	80	10	219	25	26	21	26	1.99
73698542--73698765	79	2.8	81	82	7	255	25	26	21	25	1.99
73704801--73705005	27	7.6	26	82	8	180	26	15	29	28	1.96
73704802--73705005	54	3.7	54	82	5	207	25	15	29	28	1.96
73704800--73704980	82	2.2	82	82	4	215	26	16	29	27	1.97
73704802--73705005	109	1.9	109	81	4	250	25	15	29	28	1.96
73709808--73710068	39	6.7	40	85	7	315	26	26	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73709808--73710016	79	2.7	79	90	3	316	27	26	20	25	1.99
73709808--73710068	79	3.3	78	84	10	313	26	26	21	25	1.99
73731847--73731883	15	2.3	17	86	9	51	16	5	8	70	1.30
73737728--73737763	17	2.1	18	89	5	56	47	5	5	41	1.50
73741582--73741804	48	4.7	49	72	14	162	24	29	16	30	1.97
73743020--73743067	16	2.9	17	75	6	62	41	25	16	16	1.89
73748083--73748122	17	2.5	15	84	15	53	85	0	12	2	0.71
73750933--73751115	37	4.9	37	81	4	190	21	14	26	37	1.91
73752331--73752365	15	2.3	15	85	0	52	22	5	5	65	1.36
73755248--73755288	20	2.0	20	100	0	82	48	7	9	34	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255