genome.fa.s4.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  192  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63847059--63847192	18	7.4	18	86	0	169	34	14	15	35	1.89
63847059--63847192	54	2.5	54	87	0	187	34	14	15	35	1.89
63862381--63862410	15	2.0	15	93	0	51	26	3	40	30	1.72
63862929--63862953	13	1.9	13	100	0	50	32	0	20	48	1.50
63867494--63867518	13	1.9	13	100	0	50	24	24	24	28	2.00
63880560--63880667	56	2.0	56	84	12	147	39	0	1	57	1.16
63882050--63882088	16	2.4	16	78	0	51	41	7	20	30	1.80
63882269--63882298	15	2.0	15	100	0	60	66	0	0	33	0.92
63903771--63903827	20	2.8	20	69	25	57	68	5	1	24	1.20
63903775--63903852	23	3.2	26	75	14	67	71	2	1	24	1.06
63904257--63904363	31	3.4	32	74	8	94	59	0	1	37	1.14
63908904--63908955	25	2.1	25	100	0	86	46	11	7	34	1.69
63909136--63909170	6	5.8	6	96	0	61	51	11	0	37	1.38
63920458--63920501	16	2.6	17	82	10	54	50	2	11	36	1.51
63923187--63923245	28	2.1	28	100	0	118	42	25	10	22	1.84
63926570--63926600	8	3.9	8	91	0	53	35	0	0	64	0.94
63927685--63927792	26	4.2	26	93	0	189	32	7	24	36	1.83
63931127--63931182	28	2.0	28	100	0	112	17	25	25	32	1.97
63938851--63938903	13	4.1	13	80	9	72	35	26	7	30	1.84
63940619--63940681	21	3.0	21	68	9	56	14	15	22	47	1.81
63945759--63945797	10	3.8	10	83	16	53	53	20	5	20	1.64
63958647--63958694	21	2.3	21	86	10	64	54	0	2	43	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63958763--63958796	17	2.0	17	88	11	52	70	0	29	0	0.87
63958756--63958794	21	1.9	21	94	5	71	71	0	28	0	0.86
63962444--63962525	41	2.0	41	97	0	155	3	26	9	59	1.46
63964544--63964579	2	18.0	2	100	0	72	0	50	0	50	1.00
63965718--63965815	18	5.5	18	87	4	146	39	11	12	36	1.78
63965709--63965813	35	2.9	35	92	4	165	39	10	12	38	1.77
63966120--63966153	12	2.9	11	87	12	50	35	0	0	64	0.94
63966121--63966229	21	5.3	21	66	20	61	36	2	0	59	1.18
63966118--63966148	16	2.0	16	93	6	55	35	0	0	64	0.94
63966169--63966275	7	15.7	7	69	18	50	38	4	0	57	1.20
63969613--63969645	2	17.0	2	93	6	59	51	0	48	0	1.00
63973166--63973317	40	3.8	40	91	1	234	24	21	28	25	1.99
63973166--63973337	40	4.3	40	88	2	222	23	20	28	27	1.99
63975373--63975432	21	2.9	21	90	7	88	83	0	15	1	0.73
63976310--63976489	44	4.1	44	75	11	179	30	16	25	28	1.96
63976475--63976955	119	4.0	119	92	0	764	33	17	18	30	1.94
63976879--63977148	83	3.2	83	92	1	441	31	20	20	28	1.97
63977543--63977640	18	5.5	18	87	4	146	39	11	12	36	1.78
63977534--63977638	35	2.9	35	92	4	165	39	10	12	38	1.77
63977945--63977978	12	2.9	11	87	12	50	35	0	0	64	0.94
63977943--63977973	16	2.0	16	93	6	55	35	0	0	64	0.94
63978067--63978111	22	2.0	22	84	16	58	37	2	0	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63983867--63983923	21	2.7	22	89	5	82	80	0	17	1	0.79
63983867--63983921	14	3.8	14	79	13	58	80	0	18	1	0.81
63983866--63983924	22	2.8	20	85	12	73	79	0	16	3	0.86
63984801--63984980	44	4.1	44	74	13	172	30	15	25	29	1.96
63984966--63985446	119	4.0	119	93	0	791	33	17	18	30	1.94
63985370--63985639	83	3.2	83	93	1	459	31	20	20	27	1.97
63985536--63985749	110	1.9	111	93	0	367	31	20	19	28	1.97
63985453--63985832	194	2.0	193	94	0	661	32	20	19	27	1.97
63985647--63985998	83	4.2	83	95	0	605	32	21	19	26	1.97
63985367--63985916	277	2.0	277	95	0	994	32	21	19	27	1.97
63986392--63986524	18	7.5	18	86	5	191	39	11	12	36	1.78
63986383--63986524	35	4.0	35	93	2	230	39	10	12	37	1.78
63986829--63986862	12	2.9	11	87	12	50	35	0	0	64	0.94
63986830--63986938	21	5.3	21	66	20	61	36	2	0	59	1.18
63986827--63986857	16	2.0	16	93	6	55	35	0	0	64	0.94
63986878--63987027	7	22.4	7	68	20	56	36	5	0	58	1.21
63989741--63989808	29	2.3	30	82	7	86	60	2	2	33	1.27
63989827--63989865	20	1.9	21	89	5	62	64	10	0	25	1.25
63990025--63990079	20	2.8	20	83	5	67	29	10	0	60	1.31
63993321--63993374	24	2.3	23	75	12	56	37	18	24	20	1.94
63993327--63993372	24	1.9	24	82	8	58	39	19	19	21	1.93
63994970--63995012	3	14.7	3	95	4	79	69	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63996888--63996925	17	2.4	16	79	12	51	44	2	7	44	1.47
64001321--64001369	20	2.5	19	74	9	53	61	4	0	34	1.15
64001363--64001404	18	2.3	18	80	8	50	50	0	0	50	1.00
64006788--64006833	21	2.1	22	88	4	67	60	15	17	6	1.55
64007175--64007246	26	2.8	25	83	4	81	30	18	12	38	1.87
64013594--64013655	30	2.1	30	87	6	90	74	1	11	12	1.15
64013597--64013664	9	7.2	9	77	12	57	75	2	11	10	1.16
64019514--64019728	46	4.6	48	74	8	201	23	26	20	29	1.98
64019514--64019728	94	2.3	93	86	6	292	23	26	20	29	1.98
64022950--64022981	15	2.0	17	88	11	50	31	21	21	25	1.98
64027474--64027636	46	3.5	47	75	5	161	22	28	19	29	1.98
64031517--64031598	26	3.2	26	91	0	137	36	24	7	31	1.83
64033529--64033560	15	2.0	17	88	11	50	31	21	21	25	1.98
64038053--64038215	46	3.5	47	75	5	161	22	28	19	29	1.98
64042096--64042177	26	3.2	26	91	0	137	36	24	7	31	1.83
64045862--64045917	26	2.2	26	83	6	69	50	3	1	44	1.29
64046217--64046256	13	3.1	13	92	0	71	40	22	5	32	1.76
64046371--64046627	76	3.4	76	85	1	304	24	18	22	35	1.96
64046430--64046560	40	3.4	40	76	8	144	22	19	24	32	1.97
64046404--64046595	36	5.1	36	73	9	150	22	18	25	33	1.96
64047502--64047647	79	1.8	79	94	0	256	22	24	22	30	1.99
64049830--64049898	29	2.3	30	82	7	79	37	1	7	53	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64066570--64066611	21	2.1	20	86	8	59	45	2	0	52	1.13
64067228--64067292	30	2.1	31	83	8	80	38	7	10	43	1.68
64067973--64067998	7	3.7	7	100	0	52	38	0	0	61	0.96
64069148--64069183	15	2.3	16	90	4	56	27	0	0	72	0.85
64071713--64071923	117	1.8	117	87	4	318	23	9	23	43	1.84
64078664--64078702	16	2.4	16	86	0	60	28	0	41	30	1.57
64078727--64079149	211	2.0	212	94	2	744	38	14	11	35	1.82
64080238--64080283	16	2.7	17	80	10	58	32	0	23	43	1.54
64087829--64087933	48	2.1	52	85	10	146	32	20	5	40	1.76
64088014--64088045	13	2.3	15	89	10	50	25	0	3	71	1.00
64094198--64094290	18	5.2	18	90	0	150	31	16	24	27	1.96
64094198--64094290	36	2.6	36	96	0	168	31	16	24	27	1.96
64102196--64102236	21	2.0	21	100	0	82	29	36	0	34	1.58
64102651--64102708	30	1.9	30	86	6	82	55	12	8	24	1.64
64103102--64103184	25	3.1	29	59	31	67	33	15	3	46	1.63
64103086--64103186	50	2.0	50	100	0	202	31	15	3	48	1.64
64109202--64109260	27	2.1	28	81	9	68	47	3	1	47	1.29
64109248--64109310	22	2.9	21	78	7	63	66	0	3	30	1.07
64118830--64119149	46	6.8	48	75	14	199	27	18	29	25	1.98
64131575--64131729	51	3.0	51	93	1	249	35	7	16	40	1.76
64136699--64136754	25	2.2	25	87	6	78	23	26	12	37	1.90
64136725--64136805	25	3.2	25	78	3	92	22	30	13	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64136761--64136815	25	2.2	25	86	0	74	18	29	21	30	1.97
64140442--64140589	61	2.4	61	85	3	201	26	25	17	30	1.97
64140371--64140589	60	3.6	60	80	1	197	27	24	15	31	1.96
64143666--64143699	18	1.9	18	88	5	52	20	5	11	61	1.50
64144666--64144717	27	1.9	27	100	0	104	40	11	17	30	1.85
64151345--64151386	21	2.0	21	100	0	84	23	19	23	33	1.97
64152714--64152812	6	16.5	6	100	0	198	50	16	0	33	1.45
64164382--64164429	22	2.4	19	75	18	51	64	2	20	12	1.37
64164387--64164428	22	1.9	22	90	0	66	61	2	21	14	1.43
64168901--64168958	29	2.0	29	83	6	73	46	13	10	29	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255