genome.fa.s4.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  146  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47239031--47239086	27	2.1	26	93	3	94	35	23	23	17	1.95
47239285--47239480	27	7.3	27	87	0	239	26	19	18	35	1.95
47239485--47239867	27	14.2	27	83	4	477	40	8	22	28	1.84
47243571--47243761	47	4.1	46	86	4	224	26	27	9	35	1.88
47243636--47243714	25	3.3	25	65	28	71	29	25	10	35	1.88
47247057--47247100	23	1.9	23	86	9	63	36	6	18	38	1.77
47262129--47262306	27	6.6	27	79	3	151	27	29	15	27	1.96
47262155--47262305	82	1.9	81	85	4	214	27	29	16	27	1.97
47270055--47270232	27	6.6	27	79	3	151	27	29	15	27	1.96
47270081--47270231	82	1.9	81	85	4	214	27	29	16	27	1.97
47291168--47291273	25	4.4	25	69	15	69	52	0	0	45	1.13
47291171--47291264	11	8.3	11	68	19	59	55	1	0	43	1.06
47291171--47291267	47	2.1	46	82	5	115	54	1	0	44	1.06
47297538--47297576	18	2.2	18	95	0	69	51	5	17	25	1.66
47298488--47298540	20	2.7	20	82	2	63	33	11	13	41	1.80
47298505--47298550	20	2.3	19	82	10	56	36	6	15	41	1.73
47301945--47301997	27	2.0	27	92	0	88	26	24	13	35	1.92
47301948--47302015	27	2.5	27	83	4	75	27	23	14	33	1.94
47307509--47307560	15	3.2	18	70	29	53	34	0	1	63	1.06
47308906--47308985	36	2.2	36	86	0	106	35	10	17	37	1.83
47308906--47308985	18	4.4	18	80	3	90	35	10	17	37	1.83
47308985--47309031	20	2.5	19	89	6	69	40	0	17	42	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47311159--47311229	26	2.7	26	82	0	70	38	21	22	18	1.94
47311278--47311354	32	2.4	32	77	0	82	36	19	23	20	1.95
47311349--47311427	22	3.6	22	76	10	81	35	22	26	15	1.94
47311473--47311575	43	2.4	43	90	0	161	27	33	18	21	1.96
47311875--47311991	54	2.2	55	84	4	157	28	11	22	38	1.88
47311874--47311991	27	4.4	28	80	6	136	28	11	22	38	1.88
47311887--47311993	54	2.0	54	88	0	160	28	13	20	37	1.90
47313828--47313882	24	2.3	24	96	0	101	40	16	23	20	1.91
47325678--47325815	40	3.5	40	90	3	208	23	26	23	26	2.00
47332208--47332402	101	1.9	101	89	0	300	30	24	13	30	1.94
47332209--47332402	33	5.8	32	73	8	118	30	24	13	30	1.93
47333959--47334012	20	2.7	20	69	11	56	14	20	25	38	1.91
47336875--47336966	17	5.4	17	65	23	59	39	3	3	54	1.33
47337148--47337179	13	2.5	13	89	0	55	46	12	3	37	1.57
47351114--47351221	27	4.0	27	85	0	144	34	19	22	24	1.97
47351105--47351217	54	2.1	53	88	4	172	36	16	21	25	1.94
47351734--47351796	22	2.9	22	76	9	74	19	23	23	33	1.97
47352054--47352118	25	2.6	25	82	0	76	20	20	15	44	1.86
47352083--47352148	19	3.5	19	74	12	73	18	21	12	48	1.80
47352051--47352169	6	19.3	6	66	17	57	19	18	14	47	1.82
47352086--47352158	37	2.0	37	91	0	119	19	19	12	49	1.79
47352087--47352167	37	2.2	37	86	4	110	18	19	13	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47357788--47358018	40	5.8	40	92	2	297	24	20	28	27	1.99
47366047--47366278	40	5.8	40	93	2	317	24	21	28	26	1.99
47378632--47378825	23	8.4	23	91	1	264	22	23	20	34	1.97
47386278--47386356	38	2.1	37	86	6	106	26	29	17	26	1.98
47386475--47387080	47	13.1	47	90	5	878	27	32	9	31	1.88
47386866--47386932	34	1.9	35	96	3	127	26	34	4	34	1.77
47386517--47387072	175	3.1	179	88	7	850	27	32	8	31	1.88
47386485--47387025	128	4.0	129	90	5	706	27	32	9	31	1.88
47390477--47390552	40	1.9	40	86	0	107	25	30	22	22	1.99
47390493--47390714	40	5.6	40	79	10	215	23	27	21	26	1.99
47390493--47390714	80	2.8	78	81	8	250	23	27	21	26	1.99
47391007--47391109	29	3.6	29	93	2	163	26	31	15	27	1.96
47391091--47391279	43	4.4	43	98	0	351	26	34	15	23	1.94
47393131--47393209	38	2.1	37	86	6	106	26	29	17	26	1.98
47393328--47393733	47	8.6	47	92	1	632	28	31	9	31	1.88
47393710--47393765	23	2.3	23	87	6	85	32	26	5	35	1.79
47393616--47393850	117	2.0	117	94	0	416	28	31	8	31	1.88
47393663--47393812	70	2.1	70	90	2	237	29	30	8	32	1.86
47393578--47393897	164	2.0	164	95	0	577	27	32	9	30	1.88
47393529--47393944	211	2.0	212	94	0	726	27	31	9	31	1.88
47393733--47393966	47	5.0	47	95	0	405	26	32	10	30	1.90
47412979--47413126	40	3.7	40	94	0	242	23	22	30	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47415279--47415416	6	22.8	6	71	17	99	49	13	15	21	1.79
47415258--47415441	30	6.1	30	80	8	185	48	13	16	21	1.80
47415281--47415441	61	2.7	61	91	0	252	49	13	16	21	1.79
47415559--47415640	27	3.1	27	79	11	89	36	24	23	15	1.94
47415943--47416025	27	3.1	26	81	5	85	37	16	22	22	1.94
47416213--47416406	27	7.3	27	85	2	230	27	20	16	36	1.94
47416242--47416398	79	2.0	81	87	5	230	26	20	15	36	1.93
47416208--47416434	106	2.1	107	76	5	246	29	18	16	34	1.93
47416411--47416527	27	4.3	27	74	8	103	41	8	21	28	1.82
47418492--47418650	30	5.1	30	76	15	135	49	13	16	20	1.79
47418513--47418650	36	4.1	35	80	15	159	50	13	16	20	1.78
47418513--47418625	6	18.8	6	79	13	126	50	14	15	20	1.78
47418768--47418833	27	2.5	26	80	7	69	36	21	21	21	1.95
47418792--47418849	27	2.1	27	81	6	64	36	25	20	17	1.94
47419152--47419234	27	3.1	26	83	8	87	36	21	20	21	1.96
47419433--47419628	27	7.3	27	83	2	214	27	20	17	35	1.95
47419433--47419628	54	3.6	54	83	0	239	27	20	17	35	1.95
47419638--47419749	27	4.1	27	75	4	100	41	9	21	26	1.84
47419638--47419742	54	1.9	54	84	0	138	43	9	19	27	1.81
47421736--47421873	6	22.8	6	76	15	124	47	13	17	21	1.81
47421715--47421873	30	5.1	29	78	13	131	47	13	17	20	1.82
47421736--47421873	36	4.1	35	80	15	150	47	13	17	21	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47421991--47422056	27	2.5	26	82	7	78	37	24	21	16	1.93
47422015--47422072	27	2.1	27	84	6	73	36	27	20	15	1.93
47422657--47422851	27	7.2	27	81	3	196	26	19	17	36	1.94
47422861--47422951	27	3.4	27	78	6	112	40	9	23	26	1.85
47422857--47422958	27	3.8	27	75	14	102	41	9	20	28	1.84
47422861--47422965	54	1.9	54	86	3	149	41	9	20	28	1.83
47433550--47433746	97	2.0	97	100	0	394	33	20	12	33	1.90
47436588--47436755	49	3.5	49	95	3	288	31	7	32	28	1.84
47440421--47440592	46	3.7	44	80	10	184	27	16	30	25	1.96
47440421--47440642	46	4.7	46	77	11	177	27	17	31	24	1.97
47469605--47469710	55	1.9	55	84	0	140	28	28	27	16	1.97
47485937--47485964	7	4.0	7	100	0	56	28	14	0	57	1.38
47485950--47486011	31	2.0	31	90	0	97	27	22	16	33	1.95
47486222--47486305	26	3.4	25	90	6	118	27	22	22	27	1.99
47486361--47486417	9	5.9	9	76	15	60	36	21	7	35	1.80
47486353--47486419	20	3.3	20	100	0	134	34	19	10	35	1.86
47486339--47486419	40	2.0	39	88	9	119	34	18	11	35	1.86
47486353--47486408	11	5.5	11	75	16	66	33	19	10	35	1.87
47489579--47489634	21	2.7	21	94	0	94	28	8	33	28	1.87
47495593--47495810	46	4.7	46	90	0	319	41	15	24	19	1.89
47497800--47497846	23	2.0	23	100	0	94	21	31	21	25	1.98
47499660--47499854	39	5.0	38	88	3	255	32	29	20	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47499687--47499887	78	2.6	77	83	7	246	30	29	21	18	1.97
47504109--47504158	26	1.9	26	100	0	100	44	10	14	32	1.78
47504918--47505023	53	2.0	53	84	0	140	26	23	13	36	1.92
47505619--47505674	27	2.1	27	93	0	94	41	30	3	25	1.72
47505629--47505682	27	2.0	27	92	0	90	44	27	5	22	1.75
47509130--47509250	55	2.2	56	89	4	183	30	2	6	60	1.35
47516666--47516870	39	5.3	39	85	6	247	24	21	28	24	1.99
47516613--47516905	79	3.7	79	81	7	296	25	21	28	24	1.99
47524521--47524880	40	9.6	40	81	12	331	25	19	28	26	1.99
47524772--47524880	39	2.8	39	85	2	139	24	19	28	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255