genome.fa.s4.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  196  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65378946--65378998	26	2.0	26	85	7	72	37	22	15	24	1.92
65379010--65379050	22	1.9	21	85	14	57	14	14	19	51	1.77
65385492--65385599	26	4.2	26	91	0	171	32	7	24	36	1.83
65387076--65387128	26	2.0	26	85	7	72	37	22	15	24	1.92
65390385--65390472	44	2.0	44	86	4	124	22	20	28	28	1.99
65392445--65392472	12	2.3	12	100	0	56	32	17	14	35	1.90
65394017--65394186	45	3.6	45	72	16	132	24	30	18	26	1.98
65404156--65404186	15	2.0	16	93	6	55	61	0	0	38	0.96
65407661--65407902	117	2.1	116	82	8	287	45	11	15	28	1.81
65408586--65408624	19	2.0	20	85	14	55	76	2	0	20	0.90
65409859--65410039	44	4.1	44	73	5	132	24	21	19	33	1.97
65409887--65410415	44	11.9	44	69	9	173	24	22	19	33	1.97
65410411--65410528	44	2.6	46	79	2	132	28	25	18	27	1.98
65411080--65411187	26	4.2	26	95	0	198	29	7	26	36	1.84
65411740--65411821	26	3.2	26	96	0	146	30	6	25	37	1.80
65417221--65417396	46	3.8	45	78	11	187	21	19	28	29	1.98
65417218--65417388	93	1.8	93	91	2	281	21	20	29	28	1.98
65421700--65421804	26	4.0	26	93	0	183	32	7	23	36	1.83
65447067--65447308	117	2.1	116	80	8	269	45	11	15	27	1.80
65447731--65447802	36	2.0	36	100	0	144	41	27	16	13	1.87
65448327--65448360	18	1.9	18	88	5	52	58	8	0	32	1.29
65451688--65451725	18	2.2	18	85	4	51	50	2	0	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65459709--65459769	25	2.4	25	83	0	77	19	14	22	42	1.88
65459755--65459817	25	2.5	25	82	10	92	20	7	30	41	1.81
65476232--65476352	51	2.4	50	83	8	138	40	10	19	28	1.85
65476924--65476970	23	2.0	22	88	8	67	10	8	40	40	1.70
65491078--65491238	49	3.3	49	92	3	281	29	9	31	30	1.88
65494252--65494449	50	4.0	50	76	4	177	28	27	18	25	1.98
65497691--65497865	98	1.8	93	83	10	228	29	21	26	22	1.99
65502466--65502495	11	2.7	11	89	0	51	26	6	0	66	1.16
65506085--65506117	11	2.9	12	82	17	52	24	33	9	33	1.87
65507584--65507640	25	2.3	25	85	11	73	22	22	24	29	1.99
65509695--65509744	24	2.1	24	82	14	59	34	0	50	16	1.45
65513554--65513985	47	9.1	47	89	4	578	32	10	30	26	1.90
65513774--65513848	22	3.3	22	65	17	62	30	9	34	25	1.87
65513959--65514095	46	3.0	46	86	0	193	35	9	30	24	1.87
65514278--65514424	37	4.0	37	92	1	251	23	18	31	27	1.97
65514278--65514424	73	2.0	74	93	1	251	23	18	31	27	1.97
65515687--65515977	40	7.3	40	92	0	456	24	18	28	28	1.98
65516009--65516143	57	2.4	57	77	12	134	21	19	31	27	1.97
65519778--65520208	47	9.1	48	89	6	282	32	10	30	26	1.90
65519852--65520208	47	7.6	47	95	0	597	31	11	31	25	1.91
65519997--65520071	22	3.3	22	65	17	62	30	9	34	25	1.87
65520182--65520318	46	3.0	46	86	0	193	35	9	30	24	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65520501--65520648	37	4.0	37	94	0	260	22	18	31	27	1.97
65521918--65522208	40	7.3	40	92	0	456	24	18	28	28	1.98
65522240--65522374	57	2.4	57	77	12	134	21	19	31	27	1.97
65526018--65526442	47	8.9	47	90	4	582	32	10	30	26	1.90
65526238--65526312	22	3.3	22	65	17	62	30	9	34	25	1.87
65526423--65526559	46	3.0	46	82	4	168	35	9	29	25	1.87
65526742--65526890	37	4.0	37	94	0	253	22	18	30	28	1.97
65527700--65527870	39	4.4	39	93	0	297	29	29	21	19	1.98
65540166--65540275	27	4.1	27	76	10	109	38	22	23	15	1.92
65548030--65548134	27	3.9	28	81	9	119	37	20	24	18	1.94
65554835--65554865	12	2.5	12	94	5	53	0	12	0	87	0.55
65554855--65554888	16	2.1	16	88	0	50	20	8	8	61	1.52
65555850--65555961	27	4.1	27	85	7	138	37	22	24	16	1.93
65555850--65555961	54	2.1	54	86	3	154	37	22	24	16	1.93
65563014--65563067	24	2.3	23	84	9	74	27	22	18	31	1.97
65564972--65565144	46	3.7	46	75	13	183	21	19	27	30	1.98
65564969--65565139	93	1.8	93	92	0	288	21	19	28	29	1.98
65574317--65574368	23	2.3	23	93	0	86	28	21	13	36	1.91
65584468--65584693	40	5.7	40	83	6	246	25	26	21	26	2.00
65584435--65584640	80	2.6	81	80	11	221	25	26	20	28	1.99
65584468--65584693	79	2.8	80	79	9	228	25	26	21	26	2.00
65587637--65587721	23	3.7	23	73	9	75	28	22	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65587646--65587773	46	2.8	46	82	10	163	28	21	15	35	1.94
65587680--65587767	22	3.9	22	83	4	86	28	21	15	34	1.94
65587703--65587767	22	2.9	22	88	4	94	29	20	15	35	1.93
65595288--65595319	13	2.5	13	94	0	55	34	15	12	37	1.85
65595495--65595603	33	3.3	33	82	6	132	33	24	10	32	1.89
65597286--65597381	29	3.2	29	64	21	70	39	9	22	28	1.85
65602476--65602592	62	1.9	61	82	5	148	48	4	5	41	1.45
65605226--65605390	86	1.9	85	79	7	181	44	18	7	29	1.77
65605428--65605531	37	2.8	36	77	11	102	56	2	0	39	1.21
65605469--65605607	10	14.2	10	70	9	63	59	2	2	35	1.24
65605533--65605629	30	3.2	30	72	15	92	60	3	4	31	1.31
65605594--65605633	21	2.0	20	85	5	53	57	5	7	30	1.48
65605804--65605879	36	2.1	35	85	7	100	31	1	2	64	1.15
65605874--65605927	19	2.7	19	82	8	63	38	1	0	59	1.08
65606426--65606481	21	2.7	21	85	0	67	39	3	26	30	1.73
65612819--65612892	28	2.7	27	77	12	69	58	4	6	31	1.43
65614901--65615554	176	3.7	176	82	3	663	27	24	18	29	1.98
65615319--65615418	44	2.2	45	87	1	139	29	22	23	26	1.99
65615732--65615923	64	3.0	64	94	0	330	36	13	18	31	1.90
65617064--65617106	9	4.8	9	83	16	54	11	0	6	81	0.87
65617062--65617107	13	3.4	14	80	19	62	13	0	6	80	0.89
65622686--65622717	6	5.3	6	96	0	55	81	3	0	15	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65624553--65624737	79	2.3	81	83	7	218	25	27	22	24	2.00
65624553--65624737	40	4.7	40	84	6	225	25	27	22	24	2.00
65632586--65632770	79	2.3	82	84	7	238	25	27	22	24	2.00
65632567--65632770	40	5.1	40	82	8	238	25	27	22	25	2.00
65635304--65635334	6	5.2	6	96	0	53	0	0	29	70	0.87
65636230--65636294	27	2.4	27	87	5	87	18	30	16	33	1.94
65637351--65638487	23	49.7	23	75	9	871	37	24	6	31	1.81
65637512--65638487	229	4.3	228	89	3	1254	37	24	6	31	1.81
65637353--65638487	183	6.2	182	82	6	943	37	24	6	31	1.81
65637351--65638487	206	5.5	204	81	7	1081	37	24	6	31	1.81
65641393--65641448	29	2.0	28	83	16	71	53	5	3	37	1.41
65641885--65641932	15	3.3	15	85	2	62	43	37	0	18	1.51
65641888--65641961	22	3.4	21	74	5	67	45	29	1	22	1.61
65642222--65642271	15	3.4	15	91	2	75	42	36	2	20	1.63
65642769--65642864	40	2.4	40	79	6	106	31	17	23	27	1.97
65642695--65643183	155	3.2	154	89	0	719	33	21	19	26	1.97
65643093--65643225	39	3.3	39	79	7	124	29	24	20	26	1.99
65647577--65647601	13	1.9	13	100	0	50	48	16	0	36	1.46
65653193--65653324	37	3.6	36	71	22	112	29	14	19	36	1.91
65653194--65653352	74	2.1	74	95	0	282	29	13	19	37	1.91
65653231--65653349	37	3.2	37	73	13	127	27	13	21	37	1.91
65657227--65657497	49	5.7	49	89	4	410	33	8	29	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65657227--65657497	96	2.8	96	90	3	411	33	8	29	28	1.87
65657227--65657497	145	1.9	143	93	1	470	33	8	29	28	1.87
65657616--65657760	37	3.9	37	93	0	236	22	20	31	24	1.98
65659024--65659335	40	7.8	40	89	0	462	25	21	27	26	1.99
65663268--65663724	47	9.6	47	95	1	788	32	8	29	29	1.87
65663843--65663987	37	3.9	37	93	0	236	22	20	31	24	1.98
65668000--65668028	15	1.9	15	100	0	58	37	0	0	62	0.96
65671343--65671392	21	2.5	21	81	15	61	34	10	12	44	1.75
65678831--65678978	43	3.5	41	77	10	120	26	17	26	29	1.98
65678853--65678965	41	2.7	43	79	8	133	27	16	26	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255