genome.fa.s4.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  115  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36746445--36746584	60	2.3	59	91	2	217	25	13	26	35	1.93
36747624--36747708	43	2.0	43	100	0	170	42	11	9	36	1.74
36749192--36749415	39	5.7	40	82	4	213	27	25	24	23	2.00
36749206--36749386	39	4.6	39	90	0	236	28	27	23	20	1.99
36749203--36749386	78	2.3	79	87	1	280	28	27	22	21	1.99
36751856--36751970	55	2.1	55	81	0	131	17	26	37	19	1.93
36753256--36753293	19	2.0	19	85	10	51	34	0	0	65	0.93
36753264--36753305	18	2.3	19	84	8	52	33	0	2	64	1.07
36756591--36757132	238	2.3	235	82	7	636	37	10	7	44	1.67
36760305--36760341	17	2.1	18	90	10	58	13	18	45	21	1.84
36760305--36760348	18	2.4	18	81	7	54	18	22	38	20	1.93
36762771--36762805	17	2.1	17	94	0	61	40	20	17	22	1.92
36763384--36763474	6	15.0	6	69	19	55	76	4	3	15	1.07
36763384--36763474	17	5.4	16	77	12	76	76	4	3	15	1.07
36763384--36763474	12	8.0	11	74	18	80	76	4	3	15	1.07
36764922--36764959	13	2.9	13	88	0	58	57	0	42	0	0.98
36765637--36765685	24	2.0	24	100	0	98	48	16	0	34	1.46
36772248--36772431	67	2.8	64	76	8	194	29	17	29	22	1.97
36775094--36775245	37	4.1	37	89	3	216	25	31	20	23	1.98
36775395--36775670	48	5.8	48	84	5	296	29	28	8	33	1.87
36787700--36787954	40	6.4	40	89	3	340	24	21	27	25	2.00
36793739--36794244	47	10.7	47	70	17	297	29	17	29	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36793739--36794047	46	6.7	46	73	13	233	29	17	30	22	1.97
36793739--36793995	94	2.8	93	86	5	351	31	17	29	22	1.96
36801497--36801862	47	7.7	47	72	16	242	29	18	30	22	1.97
36801495--36801763	94	2.9	94	85	2	337	28	19	29	21	1.98
36801497--36801860	46	7.7	47	73	10	251	29	18	30	22	1.97
36805465--36805507	19	2.3	19	84	15	54	34	16	11	37	1.85
36810712--36810765	25	2.1	26	82	3	65	29	14	25	29	1.95
36810734--36810935	24	8.2	25	70	14	89	35	21	24	18	1.96
36810845--36810958	24	4.6	25	74	8	83	34	20	28	17	1.95
36810734--36810958	73	3.1	73	75	7	186	35	20	25	18	1.95
36812442--36812473	12	2.7	12	90	0	55	6	15	50	28	1.68
36813946--36813989	21	2.2	20	87	4	61	36	15	20	27	1.93
36816991--36817045	28	2.0	28	81	0	65	25	20	25	29	1.99
36817206--36817286	27	3.1	26	81	8	83	34	20	22	22	1.97
36817423--36817625	53	3.8	54	79	4	198	26	22	17	34	1.95
36817451--36817635	80	2.3	80	79	5	196	27	21	16	35	1.94
36817423--36817635	27	8.0	26	79	10	189	26	21	17	34	1.96
36820523--36820547	11	2.3	11	100	0	50	24	0	0	76	0.80
36821373--36821402	12	2.5	12	94	0	51	36	10	0	53	1.35
36822633--36822690	23	2.6	23	89	5	93	43	0	13	43	1.44
36823637--36823827	56	3.4	56	89	2	303	28	12	24	34	1.92
36823637--36823858	56	4.0	52	78	13	194	27	13	24	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36823637--36823858	112	2.0	112	84	5	297	27	13	24	34	1.92
36830583--36830705	56	2.2	56	94	0	210	30	14	22	32	1.94
36838839--36838917	31	2.5	31	89	4	124	26	25	18	29	1.98
36838941--36839032	42	2.2	42	92	0	148	34	21	14	29	1.93
36839164--36839287	26	4.8	26	92	1	214	24	24	25	26	2.00
36840090--36840167	27	2.9	27	79	11	88	21	20	21	35	1.96
36840185--36840423	27	8.8	27	78	1	190	31	10	18	38	1.86
36840185--36840464	27	10.3	27	77	4	179	32	10	20	36	1.86
36840185--36840437	54	4.6	54	77	5	213	32	10	19	37	1.86
36840334--36840502	54	3.1	54	80	1	142	35	9	21	33	1.86
36840416--36840572	27	5.8	27	87	0	197	35	7	28	29	1.83
36840405--36840585	81	2.2	80	79	3	209	33	6	27	32	1.83
36840578--36840667	27	3.3	27	83	6	103	32	11	16	40	1.84
36852644--36852797	42	3.6	42	84	1	200	29	13	24	32	1.93
36852642--36852797	85	1.8	84	87	1	231	29	13	24	32	1.93
36854879--36855323	50	8.9	50	77	2	408	28	17	25	28	1.98
36854878--36855312	201	2.2	201	88	0	647	28	17	25	28	1.97
36854877--36855331	151	3.0	152	81	3	517	27	17	25	28	1.98
36856061--36856098	16	2.2	19	86	13	55	55	15	13	15	1.70
36859224--36859439	48	4.5	48	77	4	222	27	16	27	27	1.97
36859220--36859439	96	2.3	96	91	0	359	27	17	27	27	1.98
36866955--36867415	48	9.6	48	74	0	391	27	17	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36866957--36867431	96	4.9	96	87	1	628	27	17	28	26	1.98
36873317--36873376	30	2.0	30	90	6	95	58	16	15	10	1.63
36873317--36873376	15	4.0	15	80	8	77	58	16	15	10	1.63
36893434--36893655	40	5.6	40	89	1	313	23	20	26	30	1.98
36899560--36899591	16	2.0	16	93	0	55	50	28	6	15	1.68
36901087--36901147	29	2.1	29	87	3	88	26	13	31	29	1.93
36902832--36902863	14	2.3	14	94	0	55	65	9	6	18	1.42
36903919--36904026	54	2.0	54	98	0	207	36	22	19	22	1.95
36911887--36912036	43	3.5	41	81	9	151	32	25	16	25	1.96
36913186--36913232	24	2.0	24	100	0	94	48	4	0	46	1.21
36916999--36917169	93	1.8	93	88	0	261	27	29	22	21	1.99
36919557--36919636	30	2.7	30	82	7	99	56	15	17	11	1.67
36919557--36919627	15	4.7	15	81	6	90	57	12	18	11	1.64
36919559--36919636	15	5.2	15	78	9	79	56	15	16	11	1.67
36922558--36922719	46	3.5	46	76	8	184	28	28	20	22	1.99
36922557--36922729	93	1.9	93	90	0	274	27	28	20	23	1.99
36927606--36927662	28	2.0	30	82	6	73	28	21	5	45	1.73
36927852--36927950	42	2.3	42	79	5	110	31	23	18	27	1.97
36927839--36927954	43	2.7	43	77	9	121	31	24	17	26	1.97
36934752--36935037	27	10.7	27	85	4	312	34	10	17	37	1.84
36935354--36935444	28	3.3	28	84	1	112	30	36	13	19	1.90
36938260--36938336	27	2.9	27	82	0	91	27	15	16	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36938327--36938586	27	9.7	27	83	6	255	32	8	19	40	1.81
36938300--36938586	54	5.3	54	80	5	314	32	8	18	40	1.82
36938300--36938586	81	3.6	81	78	10	302	32	8	18	40	1.82
36938300--36938587	107	2.7	107	82	4	330	32	9	18	39	1.82
36940258--36940369	27	4.2	26	81	12	118	38	23	23	15	1.92
36940258--36940369	54	2.1	54	86	3	154	38	23	23	15	1.92
36941786--36941832	24	2.0	24	91	0	76	23	38	2	36	1.67
36945692--36945899	40	5.2	40	88	1	294	26	26	22	24	2.00
36945692--36945903	80	2.7	80	89	0	327	26	26	21	25	2.00
36953920--36954111	40	4.8	40	92	0	294	28	28	21	21	1.99
36953894--36954115	80	2.8	80	86	0	311	27	27	21	23	1.99
36959703--36959813	27	4.2	26	83	5	132	36	22	24	16	1.94
36961041--36961097	11	5.2	11	70	8	53	66	0	29	3	1.08
36961227--36961297	24	3.0	24	95	0	124	25	38	1	35	1.65
36961204--36961297	48	1.9	48	83	10	120	24	37	3	35	1.72
36980404--36980838	47	9.3	47	91	0	683	28	29	8	34	1.87
36994542--36994616	37	2.0	37	100	0	150	41	2	24	32	1.69
37014149--37014261	37	3.1	37	92	0	181	28	30	19	22	1.98
37014425--37014591	47	3.6	47	92	0	280	25	28	12	33	1.92
37014509--37014584	22	3.3	22	67	22	66	25	28	13	32	1.93
37020468--37020640	46	3.7	46	79	10	208	21	20	27	29	1.98
37020465--37020635	93	1.8	93	93	0	297	21	21	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37020865--37020902	19	2.0	20	85	15	53	36	0	23	39	1.55
37032143--37032384	40	6.1	40	91	1	346	26	28	21	23	1.99
37041777--37041807	7	4.3	7	92	8	53	41	29	0	29	1.56
37045759--37045930	93	1.8	93	93	0	299	21	20	29	29	1.98
37045762--37045937	46	3.8	46	79	7	194	21	19	28	30	1.98
37056250--37056328	37	2.1	37	88	4	115	25	30	18	25	1.98
37056447--37056982	47	11.4	47	95	0	919	28	29	8	33	1.87
37060442--37060780	40	8.5	40	95	0	597	25	29	21	22	1.99
37062598--37062676	37	2.1	37	88	4	115	25	31	18	24	1.98
37062794--37063329	47	11.4	47	96	0	928	28	29	8	33	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255