genome.fa.s4.2.7.7.80.10.50.1000.254.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  254  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82178393--82178417	12	2.1	12	100	0	50	60	0	8	32	1.26
82178452--82178509	27	2.1	27	87	0	80	53	1	13	31	1.50
82178644--82178722	34	2.2	37	82	11	101	50	1	2	45	1.23
82178656--82178722	34	1.9	36	87	6	102	52	1	2	43	1.25
82178948--82178980	16	2.1	16	100	0	66	27	0	0	72	0.85
82179076--82179128	9	6.2	9	77	18	60	66	0	0	33	0.92
82179076--82179128	25	2.1	26	89	3	81	66	0	0	33	0.92
82180934--82181000	31	2.2	31	86	0	89	46	13	10	29	1.76
82184957--82184995	4	10.0	4	83	5	53	46	23	0	30	1.53
82184959--82184992	11	2.9	12	91	8	61	44	23	0	32	1.54
82185645--82185671	8	3.4	8	100	0	54	59	0	25	14	1.36
82188205--82188472	132	2.0	131	92	4	441	27	11	13	47	1.77
82194760--82194794	19	1.9	17	88	11	52	17	0	5	77	0.96
82199563--82199597	3	11.7	3	100	0	70	34	31	0	34	1.58
82203073--82203166	43	2.2	43	92	0	152	40	35	2	22	1.66
82203613--82203664	11	4.3	11	73	21	50	40	3	0	55	1.18
82206666--82206724	28	2.0	30	83	6	77	52	10	22	15	1.72
82215983--82216035	27	2.0	27	100	0	106	47	11	15	26	1.79
82215993--82216115	60	2.1	59	83	5	153	38	10	16	34	1.83
82219459--82219489	16	1.9	16	93	0	53	45	35	3	16	1.63
82223104--82223163	24	2.6	23	79	7	77	11	5	10	73	1.24
82235249--82235286	20	1.9	20	100	0	76	71	5	0	23	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82235688--82235743	29	1.9	29	85	0	76	42	10	8	37	1.71
82237153--82237436	141	2.0	142	92	2	473	44	19	10	26	1.83
82237541--82237889	171	2.0	171	84	4	445	42	17	11	28	1.84
82238420--82238563	71	2.0	71	98	0	279	45	3	4	47	1.39
82243828--82243858	2	15.5	2	100	0	62	0	48	0	51	1.00
82247618--82247666	23	2.3	21	80	19	57	22	2	4	71	1.13
82249006--82249040	13	2.7	13	91	8	54	65	0	5	28	1.15
82249456--82249527	31	2.3	31	97	0	135	34	11	9	44	1.73
82254689--82254751	31	2.0	31	96	0	117	31	9	22	36	1.86
82256981--82257037	29	1.9	29	85	3	78	26	7	12	54	1.63
82258234--82258293	27	2.1	29	85	11	81	60	3	13	23	1.48
82262345--82262409	29	2.2	30	80	5	78	35	9	16	38	1.81
82262355--82262430	29	2.6	29	82	4	89	38	13	18	30	1.89
82262634--82262741	54	2.0	54	100	0	216	31	12	18	37	1.89
82269763--82269837	37	2.0	37	100	0	150	29	26	5	38	1.78
82270114--82270220	53	2.0	53	100	0	214	31	14	21	31	1.94
82274838--82274916	23	3.2	23	70	16	77	36	11	6	45	1.66
82274825--82274926	51	2.0	51	100	0	204	39	11	5	43	1.66
82276176--82276218	23	2.0	22	90	9	70	6	23	13	55	1.62
82280150--82280273	57	2.2	57	98	1	239	38	11	4	45	1.61
82281059--82281096	20	1.9	20	94	0	67	71	0	2	26	1.00
82281574--82281622	20	2.5	20	83	3	64	42	2	0	55	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82299905--82299933	13	2.3	13	94	5	51	37	0	6	55	1.27
82300635--82301097	244	1.9	246	86	4	662	37	9	12	39	1.77
82303956--82304032	6	12.8	6	94	0	109	44	0	55	0	0.99
82303956--82304032	14	5.6	14	90	6	113	44	0	55	0	0.99
82303956--82304032	20	3.8	20	92	0	118	44	0	55	0	0.99
82313068--82313097	16	1.9	15	93	6	51	43	0	3	53	1.17
82314430--82314477	19	2.6	19	80	9	55	33	6	14	45	1.70
82315321--82315502	93	2.0	92	84	4	240	25	25	13	35	1.93
82318784--82318840	29	2.0	28	86	3	78	61	3	3	31	1.30
82322961--82323002	21	2.0	21	85	0	57	30	14	23	30	1.94
82324941--82324974	14	2.3	15	90	5	52	55	0	2	41	1.15
82339610--82339979	183	2.0	182	96	0	677	29	22	13	34	1.92
82340087--82340118	16	2.0	16	93	0	55	40	18	3	37	1.67
82341439--82341465	14	1.9	14	100	0	54	74	0	0	25	0.83
82341882--82341947	6	11.0	6	100	0	132	50	16	0	33	1.46
82345487--82345542	27	2.0	28	83	10	71	42	1	1	53	1.21
82351743--82352483	288	2.7	276	82	8	852	43	8	12	35	1.74
82352501--82352538	4	9.5	4	100	0	76	26	0	0	73	0.83
82352356--82352694	175	2.0	169	84	9	436	38	9	12	39	1.76
82352521--82352966	156	2.8	154	82	7	522	38	10	14	36	1.81
82355293--82355416	39	3.2	39	62	30	91	43	8	7	41	1.62
82355283--82355447	79	2.0	81	94	4	289	45	6	9	38	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82359513--82359544	2	16.0	2	93	0	55	46	0	3	50	1.17
82372861--82373198	169	2.0	165	84	9	430	31	6	20	41	1.77
82390625--82390660	5	7.2	5	90	9	56	83	0	16	0	0.65
82390448--82390845	213	1.9	213	94	0	697	40	11	19	28	1.87
82390649--82390999	190	1.8	190	89	1	551	38	12	19	29	1.89
82392565--82392745	86	2.1	87	97	2	346	46	6	8	38	1.59
82392939--82392974	6	6.0	6	90	0	54	16	63	19	0	1.30
82395079--82395129	15	3.3	15	76	17	50	31	0	0	68	0.90
82395171--82395215	22	2.2	20	84	8	54	24	0	4	71	1.05
82395159--82395215	20	2.8	22	79	10	59	24	0	7	68	1.14
82395186--82395245	26	2.4	24	83	8	75	28	0	3	68	1.05
82397926--82398068	71	2.0	71	100	0	286	25	25	8	41	1.83
82398289--82398323	16	2.2	16	100	0	70	11	20	28	40	1.87
82399209--82399276	13	5.2	13	77	10	68	45	2	11	39	1.56
82401488--82401536	25	2.0	24	92	7	82	44	4	30	20	1.70
82404238--82404309	5	14.8	5	74	21	64	38	1	4	55	1.28
82404267--82404309	19	2.3	19	92	8	70	41	2	0	55	1.12
82404319--82404352	17	2.0	17	94	0	59	79	0	17	2	0.86
82404319--82404352	9	3.9	9	84	7	52	79	0	17	2	0.86
82405313--82405427	44	2.6	44	85	2	149	35	13	22	27	1.92
82405313--82405446	46	3.0	45	82	4	153	35	14	23	26	1.93
82410476--82410547	5	14.8	5	74	21	64	38	1	4	55	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82410505--82410547	19	2.3	19	92	8	70	41	2	0	55	1.12
82410557--82410590	17	2.0	17	94	0	59	79	0	17	2	0.86
82410557--82410590	9	3.9	9	84	7	52	79	0	17	2	0.86
82411551--82411665	44	2.6	44	85	2	149	35	13	22	27	1.92
82411551--82411684	46	3.0	45	82	4	153	35	14	23	26	1.93
82413436--82413476	21	2.0	21	90	0	64	29	21	29	19	1.98
82417264--82417312	22	2.3	22	85	3	64	53	12	18	16	1.73
82420168--82420208	22	1.9	21	85	5	55	9	7	19	63	1.48
82422321--82422352	15	2.1	15	94	0	55	0	21	28	50	1.49
82423143--82423192	17	2.7	20	78	18	70	10	0	44	46	1.37
82427779--82427828	17	2.7	20	78	18	70	10	0	44	46	1.37
82440045--82440072	14	2.0	14	100	0	56	57	14	14	14	1.66
82442910--82442953	22	2.0	22	82	4	54	45	0	0	54	0.99
82449508--82449564	18	3.2	18	92	0	96	31	17	24	26	1.97
82451541--82451574	18	1.9	18	88	5	52	29	0	5	64	1.17
82459679--82459728	18	2.8	18	78	0	55	16	28	4	52	1.61
82460010--82460119	56	2.0	56	87	0	157	45	18	7	29	1.76
82465246--82465527	38	7.1	38	72	13	212	33	26	18	21	1.97
82465345--82465503	22	7.5	22	78	8	177	33	27	18	20	1.96
82465345--82465503	44	3.8	44	78	9	195	33	27	18	20	1.96
82465327--82465527	82	2.5	82	98	0	384	33	26	19	20	1.96
82469377--82469421	22	2.0	22	83	8	56	46	0	6	46	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82480126--82480169	19	2.3	20	84	7	56	27	20	11	40	1.86
82483224--82483255	16	2.0	16	93	0	55	31	15	18	34	1.93
82486724--82486831	26	4.2	26	91	0	162	37	23	6	33	1.80
82486724--82486831	52	2.1	52	92	3	182	37	23	6	33	1.80
82492679--82492717	6	6.5	6	93	0	60	46	15	5	33	1.68
82493934--82493962	11	2.5	12	88	11	51	44	0	0	55	0.99
82497027--82497067	20	2.0	20	85	0	55	41	2	9	46	1.50
82525735--82526043	169	1.8	169	85	2	442	25	17	20	36	1.94
82529305--82529351	21	2.2	22	92	3	78	21	38	19	21	1.94
82533458--82533491	16	2.1	17	88	5	52	61	0	0	38	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255