genome.fa.s4.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  96  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29715538--29715689	37	4.1	37	93	0	241	25	31	20	22	1.98
29715900--29716827	47	19.1	47	84	7	1174	26	30	13	30	1.93
29715900--29716827	98	9.5	94	88	5	1210	26	30	13	30	1.93
29715900--29716805	441	2.1	437	92	2	1496	26	29	13	30	1.94
29719007--29719185	85	2.1	85	98	0	349	26	27	8	37	1.85
29723481--29723540	28	2.2	26	77	11	66	26	26	11	35	1.91
29723495--29723566	28	2.6	28	88	0	99	29	27	12	30	1.93
29725427--29725736	48	6.5	47	77	5	271	24	27	19	28	1.98
29725427--29725707	96	2.9	96	85	2	341	25	28	17	28	1.98
29725426--29725736	144	2.2	143	83	5	378	24	27	18	28	1.98
29725475--29725736	96	2.7	97	83	2	305	24	27	18	29	1.98
29731770--29732033	46	5.7	46	79	10	211	24	29	18	27	1.98
29738081--29738166	23	3.2	29	67	20	78	25	25	0	48	1.51
29738074--29738178	52	2.0	51	94	1	183	25	21	0	52	1.47
29740002--29740161	43	3.7	43	79	5	162	32	26	16	23	1.96
29742517--29742746	50	4.6	49	81	5	230	25	18	26	30	1.98
29749991--29750218	50	4.6	49	79	11	221	25	18	25	29	1.98
29750318--29750369	27	2.0	26	81	11	61	38	1	23	36	1.66
29758223--29758388	42	3.9	42	78	7	174	26	16	25	31	1.96
29759649--29759791	49	2.9	49	87	3	198	42	22	6	27	1.79
29759693--29759898	49	4.2	50	77	6	127	40	21	9	28	1.85
29760727--29760811	31	2.8	31	87	3	129	24	27	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29761030--29761099	25	2.8	25	86	0	95	27	20	24	28	1.99
29761147--29761254	20	5.4	20	93	0	189	35	19	9	36	1.84
29765443--29765525	31	2.7	31	87	3	116	22	25	19	32	1.97
29765746--29765840	25	3.8	25	87	5	129	27	24	24	24	2.00
29765746--29765840	50	1.9	50	88	0	145	27	24	24	24	2.00
29765888--29765924	11	3.5	11	78	14	51	32	18	10	37	1.86
29765888--29765944	20	2.8	20	91	0	87	31	19	12	36	1.89
29768888--29769075	40	4.7	40	89	5	292	26	27	21	24	1.99
29797592--29797845	55	4.8	53	77	10	234	36	16	24	22	1.94
29797599--29797799	108	1.8	110	86	4	291	34	17	25	22	1.96
29797915--29797959	23	1.9	24	90	4	74	42	11	24	22	1.86
29798038--29798068	16	1.9	16	93	0	53	41	0	22	35	1.54
29809973--29810059	43	2.0	43	85	12	117	28	29	18	22	1.97
29816822--29816986	42	3.9	42	78	4	170	27	15	25	31	1.96
29816831--29816986	86	1.8	83	82	4	195	28	16	25	29	1.97
29817138--29817169	16	1.9	17	93	6	57	31	9	15	43	1.78
29826211--29826808	47	12.6	47	91	2	935	29	28	8	33	1.87
29826211--29826808	96	6.3	96	91	3	919	29	28	8	33	1.87
29826211--29826808	143	4.2	143	93	1	966	29	28	8	33	1.87
29830422--29830605	40	4.6	40	89	4	282	22	23	28	25	1.99
29830422--29830629	80	2.6	80	87	6	307	24	23	27	25	2.00
29830422--29830629	40	5.2	40	85	7	264	24	23	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29833373--29833539	42	4.0	42	75	4	140	30	25	14	29	1.95
29835608--29835648	5	7.8	5	86	8	55	75	0	21	2	0.92
29835608--29835647	11	3.7	11	80	6	55	77	0	20	2	0.88
29837709--29837790	25	3.2	25	64	16	67	46	7	7	39	1.60
29837709--29837793	27	3.2	27	63	21	70	47	7	7	38	1.58
29837709--29837810	53	1.9	53	100	0	204	50	6	5	37	1.54
29837948--29838009	30	2.1	30	93	0	106	33	24	11	30	1.90
29841279--29841386	26	4.2	26	87	0	162	33	9	22	35	1.86
29842877--29842929	26	2.0	26	85	7	72	37	22	15	24	1.92
29845029--29845274	40	6.2	40	88	3	345	28	25	21	25	1.99
29845048--29845290	80	3.0	80	93	1	407	28	24	20	26	1.99
29845821--29845848	13	2.2	13	100	0	56	57	14	0	28	1.38
29852380--29852663	80	3.5	80	91	2	430	28	25	20	24	1.99
29852380--29852663	40	7.1	39	87	4	390	28	25	20	24	1.99
29853197--29853224	13	2.2	13	100	0	56	57	14	0	28	1.38
29856181--29856414	41	5.8	41	94	1	384	27	29	22	20	1.99
29858986--29859048	27	2.3	27	77	0	72	34	19	23	22	1.96
29859205--29859295	27	3.4	27	85	0	119	26	18	18	36	1.94
29863334--29863398	28	2.4	28	86	2	87	24	21	20	33	1.97
29866599--29866649	18	2.8	18	80	11	50	37	5	21	35	1.78
29876146--29876312	46	3.6	45	71	18	128	28	19	28	23	1.98
29881432--29881600	43	4.0	41	76	11	153	24	17	27	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29881432--29881579	43	3.5	43	79	5	158	25	16	27	31	1.96
29887767--29888598	417	2.0	416	95	0	1502	33	13	17	35	1.89
29899603--29899754	55	2.8	55	93	0	259	26	13	28	30	1.94
29899603--29899754	27	5.6	27	92	3	241	26	13	28	30	1.94
29907599--29907750	27	5.6	27	93	3	241	26	13	28	30	1.94
29907599--29907750	55	2.8	55	94	0	259	26	13	28	30	1.94
29927715--29927866	27	5.6	27	92	3	232	26	13	28	30	1.94
29927715--29927866	55	2.8	55	93	0	250	26	13	28	30	1.94
29934490--29934672	79	2.3	80	84	7	230	25	27	22	24	2.00
29934488--29934672	40	4.7	40	82	7	225	25	28	22	23	1.99
29939765--29939882	43	2.8	42	76	8	132	24	16	27	31	1.97
29939755--29939878	41	3.0	41	74	12	117	23	16	27	32	1.96
29970671--29970799	46	2.8	46	92	0	213	19	20	29	30	1.97
29973140--29973479	27	12.6	27	81	4	301	39	21	8	30	1.83
29973233--29973507	81	3.4	79	81	8	286	40	21	8	29	1.83
29973518--29973569	27	1.9	27	88	7	79	38	11	13	36	1.81
29973586--29973687	27	3.8	26	75	10	80	39	20	17	22	1.93
29975166--29975310	40	3.6	40	84	4	184	24	26	24	25	2.00
29976498--29976573	38	2.0	38	100	0	152	31	23	13	31	1.93
29977679--29977709	16	1.9	16	93	0	53	29	22	12	35	1.91
29977743--29977899	52	3.1	51	89	7	232	27	21	23	28	1.99
29977743--29977891	26	5.8	26	85	0	203	25	22	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29978109--29978187	31	2.5	31	93	0	131	31	18	22	26	1.97
29978496--29978534	21	2.0	21	85	10	55	33	5	5	56	1.43
29981117--29981189	30	2.3	32	83	4	96	30	30	5	34	1.80
29981120--29981189	32	2.3	29	83	11	86	28	31	5	34	1.81
29981262--29981357	28	3.4	28	76	0	102	22	26	20	30	1.99
29981249--29981370	56	2.2	56	83	0	163	22	30	18	28	1.97
29993383--29994614	307	4.0	307	99	0	2428	29	22	16	31	1.96
29998586--29998846	40	6.6	40	89	1	366	24	21	24	29	1.99
30006613--30006796	79	2.3	81	82	8	218	25	27	22	25	2.00
30006594--30006796	40	5.1	40	80	9	220	24	27	22	25	2.00
30014565--30014749	79	2.3	82	82	7	220	24	27	22	25	2.00
30014546--30014749	40	5.1	40	80	8	220	24	26	22	25	2.00
30018082--30018185	51	2.1	49	84	7	131	29	11	30	27	1.92
30018153--30018425	48	5.6	48	89	0	420	33	6	27	31	1.83
30018153--30018471	96	3.3	96	91	3	484	33	7	27	31	1.85
30018153--30018471	144	2.2	146	85	3	432	33	7	27	31	1.85
30018674--30018788	37	3.1	37	89	0	167	21	22	32	23	1.98
30020327--30020375	16	2.6	19	75	24	59	32	0	16	51	1.45
30020339--30020373	16	2.2	16	100	0	70	31	0	17	51	1.45
30022282--30022543	40	6.6	40	89	1	366	24	20	24	30	1.99
30035881--30036026	44	3.4	44	80	13	153	26	20	21	31	1.98
30035905--30036039	43	3.1	43	79	11	143	25	18	23	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30040952--30041208	47	5.5	46	73	13	170	24	29	19	27	1.98
30040948--30041208	94	2.8	93	76	11	275	24	29	19	27	1.98
30045819--30045862	18	2.4	18	100	0	88	43	4	22	29	1.73
30047579--30047679	40	2.5	40	84	9	127	24	26	28	19	1.99
30052846--30052914	28	2.5	28	88	9	97	27	14	26	31	1.95
30058185--30058290	40	2.7	41	83	5	137	24	27	26	21	1.99
30063437--30063543	27	4.0	26	79	6	115	37	18	24	19	1.94
30063439--30063543	54	2.0	53	83	9	133	38	17	24	20	1.93
30064952--30065004	24	2.2	24	93	0	88	20	41	3	33	1.70
30071514--30071640	47	2.7	47	80	10	143	23	27	19	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255