genome.fa.s4.2.7.7.80.10.50.1000.191.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  191  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63494413--63494577	46	3.5	47	77	11	135	23	29	18	28	1.98
63496207--63496304	29	3.4	27	79	10	97	27	26	19	26	1.99
63496520--63496563	16	2.7	16	86	10	54	13	15	15	54	1.71
63503907--63503980	29	2.6	29	84	0	94	27	27	20	25	1.99
63509131--63509263	41	3.2	41	79	10	112	30	23	12	33	1.92
63509191--63509291	41	2.5	40	84	7	116	30	23	13	31	1.94
63516707--63516816	27	4.2	26	79	12	116	38	21	23	16	1.93
63516707--63516816	53	2.1	53	84	6	143	38	21	23	16	1.93
63524480--63524591	27	4.2	26	83	7	134	37	22	23	16	1.94
63524480--63524591	54	2.1	54	86	3	154	37	22	23	16	1.94
63537041--63537091	22	2.3	22	86	6	68	29	23	11	35	1.90
63539946--63539981	18	2.0	18	89	10	56	58	0	0	41	0.98
63544535--63544657	55	2.2	55	83	0	165	17	21	30	30	1.96
63550344--63550525	65	2.8	65	87	0	256	21	24	31	21	1.98
63553696--63553828	42	3.1	42	72	9	119	26	18	24	30	1.97
63553706--63553820	43	2.7	42	76	7	117	26	20	26	27	1.99
63558017--63558074	30	1.9	30	82	0	71	17	24	34	24	1.96
63562592--63562622	14	2.2	14	94	0	53	54	12	0	32	1.38
63568545--63568688	49	2.9	49	92	0	234	25	16	27	30	1.97
63580062--63580331	95	2.9	91	80	7	283	27	19	29	23	1.98
63580249--63580377	49	2.7	49	84	8	149	29	20	27	21	1.98
63581144--63581275	55	2.4	55	84	2	167	23	20	29	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63587045--63587102	30	1.9	30	92	0	98	31	15	25	27	1.96
63587443--63587618	47	3.7	46	75	5	172	27	19	30	22	1.98
63587443--63587618	95	1.9	94	83	5	230	27	19	30	22	1.98
63588521--63588653	55	2.4	55	84	2	178	21	22	30	25	1.98
63594795--63594845	26	2.0	26	88	7	77	17	21	23	37	1.94
63596805--63596838	17	2.1	16	88	5	50	23	8	2	64	1.36
63596804--63596838	18	2.1	18	89	10	56	22	8	2	65	1.34
63603429--63603862	217	2.0	217	95	0	789	34	20	15	29	1.93
63606298--63606327	14	2.1	15	93	6	53	33	0	3	63	1.11
63606473--63606510	18	2.0	20	85	10	53	42	0	0	57	0.98
63607298--63607327	15	2.0	15	100	0	60	26	20	26	26	1.99
63608943--63608982	5	7.8	5	86	5	53	20	2	0	77	0.88
63608943--63609000	15	3.8	16	75	6	57	18	6	0	74	1.04
63612116--63612167	5	10.2	5	76	19	54	25	0	1	73	0.94
63612117--63612167	22	2.5	20	82	14	68	23	0	1	74	0.92
63612115--63612166	27	2.0	26	85	11	70	25	0	1	73	0.94
63612229--63612253	6	4.2	6	100	0	50	16	0	0	84	0.63
63612224--63612294	26	2.7	26	76	4	81	18	4	1	76	1.03
63625054--63625098	20	2.2	20	88	0	63	48	4	8	37	1.55
63629422--63629472	25	2.0	26	92	3	86	54	15	5	23	1.63
63629560--63629641	41	2.0	41	95	0	146	41	9	17	31	1.82
63631710--63631739	10	3.0	10	90	0	51	23	0	36	40	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63632446--63632551	47	2.2	49	91	3	180	32	19	27	20	1.97
63634051--63634089	19	2.1	19	100	0	78	51	15	0	33	1.44
63647044--63647146	50	2.1	50	88	3	154	38	14	21	25	1.91
63647250--63647363	28	4.1	28	87	0	156	34	14	21	30	1.92
63647250--63647363	56	2.0	56	89	0	174	34	14	21	30	1.92
63647253--63647379	56	2.3	56	86	2	166	34	14	22	27	1.94
63653457--63653519	31	2.0	31	96	0	117	23	0	34	41	1.55
63656723--63656791	21	3.3	21	74	8	68	14	17	33	34	1.90
63657424--63657709	78	3.6	78	83	8	330	44	25	9	19	1.81
63659366--63659415	15	3.3	15	80	0	64	38	30	10	22	1.86
63659839--63659933	34	2.8	34	87	4	138	60	13	2	24	1.45
63660347--63660387	21	2.0	21	95	0	73	29	29	17	24	1.97
63660458--63660504	22	2.1	22	100	0	94	21	8	14	55	1.66
63664675--63664706	17	1.9	16	93	6	55	21	18	31	28	1.97
63681000--63681077	39	2.0	39	97	0	147	24	15	21	38	1.92
63684056--63684102	19	2.5	19	96	0	85	31	4	8	55	1.49
63685570--63685789	49	4.7	46	74	9	185	26	21	28	24	1.99
63687391--63687647	127	2.0	127	84	3	338	33	22	15	28	1.94
63691528--63691590	30	2.1	31	90	3	101	22	47	1	28	1.60
63691606--63691650	18	2.2	21	81	18	60	24	31	0	44	1.54
63693758--63694002	49	4.9	49	79	4	267	29	25	17	26	1.98
63693771--63694002	100	2.3	99	80	4	279	30	25	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63696087--63696369	48	5.9	48	73	3	230	24	30	18	27	1.98
63696086--63696357	94	2.9	94	77	5	224	23	30	18	27	1.98
63699619--63699668	12	4.1	13	72	12	52	50	8	8	34	1.61
63699628--63699675	24	2.0	24	100	0	96	45	8	8	37	1.64
63709205--63709283	11	6.6	11	70	18	52	43	1	3	51	1.27
63709154--63709283	61	2.1	61	86	0	179	42	2	6	49	1.40
63710411--63710449	21	1.9	20	89	5	60	30	28	23	17	1.97
63723037--63723079	18	2.4	18	96	0	77	25	11	32	30	1.91
63728276--63728432	50	3.2	49	71	12	124	16	21	20	41	1.90
63729673--63729770	43	2.3	43	83	0	106	16	26	27	29	1.97
63731638--63731691	24	2.2	24	100	0	108	35	27	3	33	1.75
63738485--63738524	18	2.2	18	86	8	55	30	30	15	25	1.95
63751436--63751497	23	2.6	24	76	14	67	30	0	1	67	1.00
63751453--63751503	26	2.0	27	84	7	70	33	0	1	64	1.05
63751798--63751864	20	3.1	21	79	12	75	67	0	31	1	1.00
63751807--63751866	17	3.4	17	80	13	68	70	0	28	1	0.97
63754921--63754964	6	7.3	6	84	0	61	36	31	29	2	1.70
63755383--63755424	22	2.0	22	85	4	59	21	26	40	11	1.88
63756346--63756376	6	5.2	6	96	0	53	64	0	32	3	1.09
63756705--63756953	49	5.2	48	73	16	207	24	30	18	27	1.98
63756705--63756954	93	2.6	95	84	5	321	24	30	18	27	1.98
63764422--63764691	49	5.5	48	75	13	198	23	27	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63764423--63764694	98	2.8	98	79	8	281	23	27	19	29	1.98
63769282--63769330	24	2.1	23	96	3	89	12	18	20	48	1.79
63770558--63770627	20	3.4	20	80	9	79	60	0	0	40	0.97
63770793--63770858	32	2.1	33	86	11	93	54	1	0	43	1.09
63770847--63770928	22	3.6	22	79	11	78	52	1	1	45	1.16
63770847--63770902	25	2.4	25	85	8	73	57	0	1	41	1.09
63771122--63771160	20	2.0	20	89	0	60	30	2	2	64	1.21
63776828--63776891	31	2.1	31	88	8	96	57	10	4	26	1.52
63776922--63776952	14	2.2	14	94	0	53	61	12	6	19	1.53
63778132--63778178	11	4.2	11	79	12	51	38	12	0	48	1.41
63778129--63778178	24	2.1	24	92	0	82	38	14	0	48	1.44
63784180--63784275	50	1.9	51	82	2	122	33	9	33	23	1.87
63785158--63785190	17	1.9	17	88	11	50	39	12	3	45	1.57
63786223--63786252	13	2.4	12	94	5	51	40	0	13	46	1.43
63786270--63786318	10	4.9	10	80	14	57	20	8	2	69	1.24
63787039--63787072	17	1.9	18	88	5	52	26	8	5	58	1.51
63789956--63789997	13	3.2	13	83	13	50	16	4	0	78	0.91
63789955--63789988	17	2.0	17	88	11	52	14	2	0	82	0.79
63791137--63791171	16	2.2	16	89	0	52	42	0	0	57	0.99
63791170--63791208	19	2.1	19	85	9	53	35	2	0	61	1.10
63793456--63793501	18	2.8	18	84	15	64	0	30	41	28	1.56
63797795--63797894	3	33.0	3	84	2	74	55	3	9	33	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63802820--63802876	24	2.4	24	90	0	87	38	19	19	22	1.93
63804961--63804994	14	2.4	14	90	9	52	70	2	26	0	1.01
63813151--63813204	23	2.4	24	76	17	62	27	0	3	68	1.06
63814881--63814948	21	3.2	21	76	0	82	16	22	16	45	1.85
63814863--63814977	42	2.8	42	82	4	135	20	22	15	41	1.89
63832712--63832755	22	2.0	23	86	4	63	56	0	0	43	0.99
63832713--63832743	15	2.0	16	93	6	55	61	0	0	38	0.96
63837718--63837800	26	3.2	25	93	5	139	36	25	4	33	1.77
63842204--63842238	16	2.1	18	89	10	56	37	17	0	45	1.48
63846124--63846158	17	2.1	16	89	5	52	71	0	28	0	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255