genome.fa.s4.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  151  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48993038--48993208	49	3.5	49	92	0	261	30	29	16	23	1.96
49006224--49006272	25	1.9	26	91	4	82	20	30	24	24	1.98
49007475--49007537	32	2.0	33	93	6	112	36	20	12	30	1.90
49007929--49007958	1	30.0	1	93	0	51	3	0	0	96	0.21
49008637--49008717	23	3.5	23	79	5	92	40	16	9	33	1.81
49017651--49017732	41	2.0	41	83	4	103	37	2	2	57	1.25
49018300--49018332	15	2.1	16	88	5	50	39	0	0	60	0.97
49022170--49022314	71	2.0	71	94	0	254	30	21	18	29	1.97
49025091--49026139	354	3.0	354	97	0	1956	41	20	17	20	1.90
49041924--49042031	25	4.4	24	87	4	128	28	21	22	27	1.99
49041924--49042043	49	2.4	50	77	10	131	27	22	22	27	1.99
49042955--49042983	12	2.3	13	94	5	51	24	3	0	72	1.00
49050687--49050831	76	1.9	73	91	4	236	26	24	25	22	2.00
49056347--49056383	15	2.5	15	100	0	74	32	29	27	10	1.90
49058700--49058730	6	5.2	6	92	0	53	19	0	48	32	1.49
49058843--49059237	126	3.1	126	87	1	583	37	17	16	28	1.92
49061113--49061217	42	2.5	41	84	6	140	39	14	21	24	1.91
49063437--49063522	29	2.8	30	72	15	77	51	3	5	39	1.43
49065551--49065676	43	3.0	43	89	1	182	23	15	26	34	1.94
49070483--49070557	9	8.4	9	71	8	55	64	1	1	33	1.11
49070492--49070557	25	2.5	28	80	7	75	63	1	1	33	1.13
49071086--49071159	20	3.7	21	71	18	68	29	2	5	62	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49071076--49071159	29	2.9	29	71	15	75	29	3	4	61	1.33
49081861--49082058	99	2.0	99	100	0	396	26	5	21	47	1.71
49082652--49082739	23	3.9	23	80	4	99	26	22	18	32	1.97
49087857--49088535	48	14.2	48	97	0	1189	34	8	28	28	1.87
49088676--49088815	37	3.8	37	91	0	226	25	20	30	25	1.99
49090150--49090211	30	2.1	30	93	0	106	29	17	14	38	1.89
49092562--49092588	14	1.9	14	100	0	54	29	3	22	44	1.70
49099181--49099323	40	3.6	40	95	1	243	23	23	27	25	2.00
49099181--49099357	80	2.2	80	86	5	234	24	22	27	24	2.00
49099584--49099627	22	2.0	21	83	16	54	31	18	13	36	1.90
49102065--49102114	20	2.5	20	86	3	64	36	12	2	50	1.51
49103892--49104119	40	5.7	40	88	5	293	25	27	21	25	2.00
49103892--49104119	79	2.9	79	84	6	300	25	27	21	25	2.00
49103892--49104116	119	1.9	119	85	5	312	25	27	22	24	2.00
49119698--49119875	27	6.6	27	79	3	151	27	29	15	27	1.96
49119724--49119874	82	1.9	81	85	4	214	27	29	16	27	1.97
49122686--49122870	40	4.7	39	88	2	237	25	28	22	23	2.00
49122679--49122873	79	2.5	80	82	5	252	25	27	22	24	2.00
49125849--49125893	20	2.2	20	92	0	72	17	28	31	22	1.97
49127681--49127712	16	1.9	17	93	6	57	43	0	0	56	0.99
49133460--49133714	55	4.8	54	79	9	260	34	18	25	21	1.96
49133470--49133716	108	2.3	110	81	9	307	34	17	25	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49135820--49135867	20	2.4	20	82	0	60	10	20	43	25	1.83
49137679--49137710	16	1.9	17	93	6	57	43	0	0	56	0.99
49140210--49140234	11	2.3	11	100	0	50	60	8	0	32	1.26
49146088--49146159	31	2.3	31	95	4	128	27	25	18	29	1.98
49146183--49146274	42	2.2	42	94	0	157	34	22	14	28	1.93
49146407--49146594	26	7.3	26	89	2	276	27	23	21	27	1.99
49146407--49146594	52	3.7	52	95	3	330	27	23	21	27	1.99
49147395--49147488	27	3.5	26	80	15	102	19	24	20	36	1.95
49147525--49147876	27	13.0	27	77	6	248	30	9	20	40	1.84
49147628--49147862	81	2.9	81	87	1	294	28	8	21	41	1.81
49147854--49147984	27	4.9	27	90	0	190	40	9	22	27	1.84
49147842--49148029	81	2.3	80	75	8	173	36	9	22	31	1.86
49149971--49150043	34	2.1	34	87	5	103	28	24	21	24	1.99
49151132--49151169	20	1.9	20	88	0	58	31	5	10	52	1.58
49158400--49158646	49	5.0	50	82	2	300	25	18	27	29	1.98
49164063--49164256	40	4.9	40	92	0	318	22	27	23	27	1.99
49164036--49164256	80	2.8	80	88	2	322	21	27	23	27	1.99
49168400--49168545	43	3.4	43	76	11	147	23	17	27	31	1.97
49171382--49171429	24	2.0	24	95	0	87	33	10	12	43	1.77
49173908--49173981	26	2.8	26	89	0	103	35	24	21	18	1.96
49173991--49174185	20	9.8	20	88	0	273	38	28	21	11	1.89
49174685--49174722	19	2.0	19	85	10	51	21	44	26	7	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49177926--49178103	27	6.6	27	83	3	178	30	28	14	25	1.95
49177947--49178102	82	1.9	81	89	3	242	30	28	14	26	1.95
49185935--49186112	27	6.6	27	83	3	178	30	28	14	25	1.95
49185956--49186111	82	1.9	81	89	3	242	30	28	14	26	1.95
49185935--49186141	82	2.5	83	77	11	228	30	29	14	25	1.95
49188877--49189033	43	3.7	43	75	7	115	24	17	25	32	1.97
49192006--49192042	20	1.9	18	89	10	56	54	5	2	37	1.38
49193593--49193633	21	2.0	21	90	0	64	21	12	19	46	1.82
49198514--49198669	43	3.6	43	86	5	208	32	23	14	29	1.94
49200375--49200475	49	2.1	49	100	0	202	33	15	13	36	1.88
49213905--49213960	28	2.0	29	89	3	87	12	19	48	19	1.80
49223688--49223970	43	6.6	43	84	3	349	31	28	15	25	1.96
49223687--49223970	85	3.3	86	83	4	351	31	28	15	25	1.96
49223688--49223970	128	2.2	128	85	3	365	31	28	15	25	1.96
49224061--49224126	34	1.9	35	84	9	91	56	1	3	39	1.24
49235466--49235519	23	2.3	23	96	0	99	29	0	40	29	1.57
49243625--49243831	41	5.1	41	86	3	285	38	23	22	15	1.93
49243625--49243831	81	2.5	80	89	3	299	38	23	22	15	1.93
49243960--49244007	25	1.9	25	100	0	96	47	4	8	39	1.53
49243966--49244007	13	3.3	13	75	18	52	50	4	7	38	1.51
49244026--49244106	21	3.6	22	76	14	94	29	1	25	43	1.63
49244032--49244122	46	2.0	46	93	4	157	30	2	25	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49244162--49244210	22	2.3	22	82	10	57	22	2	42	32	1.65
49244619--49244756	74	1.9	73	83	7	181	42	10	18	29	1.83
49248120--49248153	17	1.9	18	94	5	61	35	11	29	23	1.90
49248474--49248694	43	5.2	42	78	9	234	26	18	26	28	1.98
49248473--49248700	84	2.7	83	82	4	262	26	17	25	30	1.97
49258128--49258278	43	3.5	44	80	8	184	29	15	23	31	1.96
49261164--49261375	40	5.3	40	86	3	232	22	21	27	28	1.99
49269394--49269602	40	5.3	39	87	3	233	22	21	27	28	1.99
49269393--49269602	79	2.7	80	82	5	239	23	20	27	28	1.99
49272880--49273057	6	28.8	6	72	16	132	48	12	19	19	1.81
49272903--49273032	19	6.6	19	73	19	115	47	13	19	20	1.82
49272892--49273013	37	3.3	37	82	6	142	48	13	18	18	1.81
49272959--49273035	37	2.1	37	87	0	109	46	14	19	19	1.83
49272880--49273057	25	7.2	23	76	11	108	48	12	19	19	1.81
49272897--49273057	62	2.6	62	91	0	259	47	13	19	19	1.82
49273203--49273266	33	2.0	32	84	3	83	35	20	23	20	1.96
49274160--49274224	27	2.4	27	76	5	69	20	24	20	35	1.96
49274278--49274445	27	6.1	27	77	9	117	32	7	19	40	1.80
49274258--49274438	54	3.3	54	77	9	163	30	7	20	41	1.80
49277487--49277565	38	2.1	38	100	0	158	41	20	10	27	1.84
49285283--49285445	42	3.9	42	75	3	141	30	25	14	29	1.95
49289212--49289240	13	2.2	13	100	0	58	55	13	0	31	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49292171--49292209	6	6.5	6	96	0	69	82	0	2	15	0.79
49293718--49293756	21	2.0	21	85	10	55	12	20	48	17	1.80
49294499--49294536	7	5.1	7	90	9	58	81	2	2	13	0.90
49294497--49294536	14	2.7	15	88	11	64	80	2	5	12	0.98
49301384--49301446	30	2.1	30	90	0	99	58	14	1	25	1.45
49301473--49301515	22	2.0	22	90	0	68	55	9	11	23	1.64
49302313--49302350	17	2.2	17	86	9	51	34	0	10	55	1.34
49315401--49315654	77	3.3	78	84	7	283	26	21	27	24	1.99
49315401--49315654	39	6.6	39	84	7	283	26	21	27	24	1.99
49318665--49318786	49	2.6	47	82	5	138	27	30	16	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255