genome.fa.s4.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  95  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29382045--29382248	40	5.1	40	81	8	229	24	27	23	24	2.00
29384619--29384704	43	2.0	43	86	8	122	22	24	1	52	1.54
29388188--29388324	50	2.8	50	86	4	197	23	16	30	29	1.96
29402621--29402685	12	5.3	12	71	14	53	55	15	12	16	1.69
29402630--29402739	6	17.8	6	71	15	64	50	11	18	20	1.78
29402635--29402717	31	2.7	31	86	0	112	49	14	18	18	1.80
29402675--29402739	25	2.6	25	85	0	85	46	10	20	23	1.81
29403630--29403721	27	3.4	27	84	3	114	25	17	20	36	1.94
29403630--29403748	54	2.2	54	80	5	125	26	14	20	39	1.90
29403672--29403826	27	5.7	27	89	4	179	25	6	22	45	1.76
29403672--29403826	81	1.9	81	82	5	197	25	6	22	45	1.76
29412391--29412418	8	3.5	8	100	0	56	42	21	25	10	1.85
29413907--29414000	46	2.0	46	100	0	188	39	12	20	27	1.89
29419955--29420264	97	3.3	94	74	10	290	28	19	27	24	1.98
29420047--29420220	49	3.6	48	74	8	140	28	18	27	24	1.98
29422627--29422985	32	11.6	31	72	14	212	64	3	1	30	1.19
29422632--29422684	22	2.5	21	84	9	63	64	5	1	28	1.27
29422632--29422985	10	35.5	10	67	21	67	64	3	1	30	1.18
29422827--29422919	22	4.3	22	72	10	75	63	3	0	33	1.10
29422913--29422948	19	1.9	19	88	5	56	63	2	0	33	1.08
29422724--29422985	9	29.6	9	65	22	85	65	3	1	30	1.17
29425585--29425622	19	2.0	20	85	15	53	39	23	0	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29425851--29426018	46	3.6	45	76	12	171	29	27	20	22	1.98
29425852--29426022	93	1.8	93	91	0	279	29	28	20	22	1.98
29426442--29426501	30	2.0	30	86	0	84	33	25	5	36	1.78
29428760--29429214	9	48.3	9	67	17	126	33	3	4	58	1.35
29428827--29428893	30	2.2	30	84	5	91	40	1	1	56	1.17
29428995--29429048	20	2.8	19	81	10	65	31	3	3	61	1.31
29429112--29429171	19	3.2	19	68	13	52	30	0	3	66	1.07
29431721--29431757	11	3.4	11	88	0	56	67	0	0	32	0.91
29431726--29431758	13	2.6	13	90	4	50	63	0	0	36	0.95
29432142--29432175	17	1.9	18	88	5	52	35	0	2	61	1.11
29432899--29432932	13	2.6	13	100	0	68	5	17	52	23	1.66
29434272--29434352	42	1.9	42	87	5	119	29	27	14	28	1.95
29438675--29438760	27	3.2	27	66	18	79	33	18	27	19	1.96
29438687--29438772	25	3.3	25	67	17	75	33	18	26	20	1.96
29438711--29438798	29	3.2	29	64	18	78	38	18	25	18	1.92
29438664--29438924	54	4.8	54	81	1	263	37	18	23	20	1.94
29438702--29438787	27	3.2	27	66	18	79	37	16	25	20	1.93
29446139--29446342	53	3.8	52	76	5	192	37	18	22	21	1.94
29479477--29479581	51	2.1	51	98	0	201	37	7	23	31	1.83
29480582--29480664	41	2.0	41	92	0	139	49	13	12	25	1.76
29481765--29481876	27	4.2	26	84	7	134	37	22	24	16	1.93
29481765--29481876	54	2.1	54	86	3	154	37	22	24	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29485794--29485978	40	4.7	40	84	6	225	25	28	22	23	1.99
29485796--29485978	79	2.3	81	83	7	223	25	28	22	24	1.99
29487997--29488168	93	1.8	93	95	2	310	28	29	20	20	1.98
29487990--29488165	46	3.8	46	79	14	209	29	29	20	20	1.98
29500016--29500199	40	4.6	40	85	4	253	24	23	26	25	2.00
29500020--29500174	83	1.9	83	94	0	274	23	23	28	25	1.99
29500020--29500200	83	2.2	82	88	3	242	24	23	27	24	2.00
29504393--29504424	15	2.1	15	94	0	55	53	6	0	40	1.26
29510739--29510833	44	2.2	42	83	10	113	27	16	25	30	1.97
29511929--29511987	30	2.0	30	86	0	82	37	6	25	30	1.82
29512408--29512538	46	2.8	48	78	12	164	23	19	26	29	1.98
29519466--29519643	27	6.6	26	82	6	178	26	15	28	28	1.96
29519466--29519643	54	3.3	54	81	8	200	26	15	28	28	1.96
29519467--29519622	82	1.9	81	85	6	217	26	16	28	28	1.97
29519463--29519643	82	2.2	81	81	4	213	27	16	28	28	1.97
29519548--29519654	27	3.9	27	85	1	70	26	14	28	29	1.95
29522770--29522830	30	2.0	30	90	0	95	37	8	24	29	1.84
29523256--29523427	46	3.7	45	77	11	179	23	19	26	29	1.98
29523249--29523419	93	1.8	93	89	2	272	23	21	26	28	1.99
29529715--29529757	21	2.0	23	86	9	63	4	23	4	67	1.28
29532003--29532121	56	2.1	56	92	3	195	32	23	16	26	1.96
29532003--29532136	56	2.4	56	87	2	171	34	21	15	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29533045--29533095	10	5.3	10	77	13	54	37	11	0	50	1.39
29537065--29537113	21	2.5	19	79	20	57	32	0	20	46	1.51
29537074--29537113	21	2.0	20	95	5	71	32	0	22	45	1.53
29537074--29537121	21	2.3	21	86	10	64	33	2	20	43	1.64
29544223--29544287	32	2.0	32	90	0	103	29	9	13	47	1.74
29560140--29560185	22	2.1	21	84	4	56	47	8	0	43	1.34
29562626--29562727	50	2.0	50	100	0	204	47	11	27	13	1.78
29564476--29564519	20	2.2	20	80	4	54	25	0	29	45	1.54
29565758--29565930	45	3.9	45	87	1	233	24	20	26	27	1.99
29572477--29572520	20	2.2	20	80	4	54	25	0	29	45	1.54
29573749--29573875	44	2.9	45	85	4	188	24	22	28	24	2.00
29575229--29575282	26	2.1	27	82	6	67	24	14	24	37	1.93
29576766--29576873	26	4.2	26	93	0	189	36	24	7	32	1.83
29590497--29591128	40	15.8	40	83	3	781	26	28	21	24	1.99
29590537--29591128	80	7.4	80	92	1	866	26	28	21	23	1.99
29590496--29591124	120	5.2	120	88	2	967	26	28	21	24	1.99
29599141--29599771	40	15.8	40	85	4	828	26	29	20	24	1.99
29599121--29599766	120	5.4	120	95	0	1152	26	29	20	23	1.99
29603601--29603646	22	2.1	22	84	4	58	47	8	0	43	1.34
29605900--29605929	14	2.1	15	93	6	53	16	20	6	56	1.62
29610608--29610681	27	2.8	27	83	2	87	35	21	25	17	1.95
29612909--29612995	37	2.4	37	86	3	122	36	2	22	37	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29615827--29615876	25	2.0	25	96	0	91	26	28	14	32	1.94
29628893--29629085	40	4.8	40	87	2	244	27	29	21	21	1.98
29628893--29629085	81	2.4	80	86	2	253	27	29	21	21	1.98
29636997--29637205	40	5.3	40	83	8	218	27	28	21	22	1.99
29637023--29637205	40	4.6	40	85	7	223	27	28	21	21	1.99
29637023--29637171	79	1.9	79	88	2	228	27	29	21	21	1.99
29648996--29649020	9	2.8	9	100	0	50	68	12	0	20	1.21
29651531--29651631	37	2.7	37	92	0	175	24	31	18	24	1.98
29653277--29653460	40	4.6	40	83	6	205	23	21	27	27	1.99
29653277--29653457	80	2.3	81	84	9	230	23	21	27	27	1.99
29661213--29661396	40	4.6	40	83	6	205	23	21	27	27	1.99
29661213--29661393	80	2.3	81	84	9	230	23	21	27	27	1.99
29663715--29663762	20	2.6	19	81	12	55	43	14	4	37	1.65
29674278--29674326	24	2.0	24	92	0	80	24	20	20	34	1.96
29685346--29685528	79	2.3	81	83	7	223	25	27	22	24	2.00
29685325--29685528	40	5.1	40	81	8	229	25	27	22	25	2.00
29687216--29687310	40	2.3	42	90	5	149	26	27	23	23	2.00
29693105--29693272	46	3.6	46	78	13	200	29	29	19	21	1.98
29693108--29693278	93	1.8	93	96	0	315	29	29	20	21	1.98
29693698--29693757	30	2.0	30	86	0	84	30	25	6	38	1.81
29696580--29696724	40	3.6	40	85	6	186	22	26	24	26	2.00
29699542--29699641	52	1.9	52	97	0	191	30	21	17	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29703917--29704007	46	2.0	45	87	4	130	31	27	18	21	1.97
29704381--29704440	30	2.0	30	90	0	93	30	25	8	36	1.85
29708064--29708215	37	4.1	37	93	0	241	26	30	20	22	1.98
29708424--29709738	47	27.1	47	85	6	1705	26	30	12	30	1.93
29708424--29709738	145	9.0	141	89	5	1714	26	30	12	30	1.93
29708904--29708978	22	3.3	22	64	29	57	25	32	14	28	1.95
29708429--29709738	390	3.4	390	96	0	2378	26	30	12	30	1.93
29711912--29712090	85	2.1	85	97	0	340	26	28	8	36	1.85
29713540--29713648	57	1.9	58	86	1	157	28	27	19	24	1.98
29713860--29714289	40	10.8	40	92	1	677	26	29	20	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255