genome.fa.s4.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  141  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45597930--45597991	26	2.4	26	100	0	124	29	24	24	22	1.99
45602683--45602772	23	3.8	24	83	7	103	24	23	20	32	1.98
45602683--45602790	23	4.5	23	78	14	96	25	23	20	31	1.98
45607866--45607944	37	2.1	37	90	0	122	25	31	18	24	1.98
45608064--45608427	47	7.7	47	93	1	586	28	29	8	32	1.87
45611609--45611992	40	9.6	40	82	5	325	25	27	22	24	2.00
45611814--45611990	79	2.2	81	82	7	211	24	27	22	25	2.00
45613847--45613925	37	2.1	37	88	0	113	24	32	18	24	1.97
45614044--45614315	47	5.7	47	91	2	411	28	30	8	32	1.87
45616659--45616758	6	16.3	6	79	12	96	48	15	18	19	1.82
45616670--45616768	31	3.2	31	91	0	153	47	15	18	19	1.83
45617146--45617204	22	2.7	22	84	5	75	30	20	27	22	1.98
45617551--45617799	27	9.3	27	88	2	331	25	22	18	34	1.96
45617551--45617799	107	2.3	109	90	3	389	25	22	18	34	1.96
45617550--45617826	134	2.1	135	86	3	380	25	20	19	34	1.96
45617551--45617799	54	4.6	54	87	3	367	25	22	18	34	1.96
45617811--45618070	54	4.8	54	92	0	421	30	7	21	40	1.81
45617784--45618070	27	10.6	27	82	0	340	30	8	21	40	1.82
45619311--45619460	6	24.3	6	71	15	92	48	13	19	18	1.80
45619322--45619414	19	4.6	19	82	12	114	47	12	22	17	1.81
45619311--45619483	31	5.5	31	79	8	163	50	12	18	18	1.78
45619319--45619420	25	4.7	23	74	24	96	48	12	21	17	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45619319--45619429	43	2.5	42	89	4	159	46	13	21	18	1.83
45619311--45619470	62	2.6	61	83	5	180	48	13	19	18	1.80
45620255--45620423	27	6.3	27	87	4	225	24	18	21	34	1.96
45620352--45620667	27	11.7	27	84	3	352	30	10	19	39	1.86
45620271--45620450	81	2.2	81	86	3	238	26	16	21	36	1.94
45620273--45620423	54	2.8	54	93	0	257	23	18	22	35	1.95
45620352--45620667	54	5.9	54	87	3	413	30	10	19	39	1.86
45622607--45622706	12	8.7	12	69	20	61	48	12	20	20	1.80
45622652--45622746	6	15.5	6	77	12	95	46	15	18	18	1.84
45622658--45622756	31	3.2	31	94	0	153	46	15	19	19	1.84
45622622--45622715	37	2.5	37	92	0	152	46	11	21	20	1.82
45622622--45622746	37	3.6	36	79	12	134	47	12	20	20	1.82
45622912--45622976	27	2.4	27	82	5	78	33	24	23	18	1.96
45623539--45623758	27	8.1	27	88	2	307	24	21	20	33	1.97
45623523--45623788	81	3.3	79	81	9	286	25	19	21	33	1.97
45623557--45623842	54	5.3	52	85	5	189	25	17	21	36	1.94
45623690--45624005	27	11.7	27	81	1	314	30	11	19	38	1.87
45623743--45624005	54	4.9	54	86	2	359	31	9	19	39	1.84
45627471--45627679	85	2.4	86	94	2	359	10	23	33	32	1.89
45627471--45627679	43	4.9	43	94	1	357	10	23	33	32	1.89
45627870--45628013	29	5.0	28	74	10	148	24	19	28	27	1.98
45627845--45628013	58	2.9	58	94	0	286	24	19	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45631598--45631710	27	4.2	26	76	10	93	39	21	21	17	1.92
45633150--45633215	24	2.8	23	88	6	96	21	37	6	34	1.78
45638465--45638577	27	4.2	26	82	8	118	36	22	23	17	1.95
45640011--45640084	24	3.1	24	92	0	112	21	41	4	32	1.72
45644861--45645036	46	3.8	46	75	15	182	22	19	28	29	1.98
45644857--45645028	93	1.8	93	89	0	272	22	19	29	28	1.98
45647983--45648051	15	4.6	15	85	0	75	11	17	13	57	1.64
45647976--45648063	30	3.0	29	81	6	97	10	14	15	59	1.61
45650913--45651088	46	3.8	45	78	10	194	21	20	28	28	1.98
45650909--45651080	93	1.8	93	92	0	290	21	20	29	27	1.98
45665070--45665204	59	2.4	53	80	10	128	23	17	25	33	1.96
45678082--45678326	49	4.9	49	78	4	242	26	17	26	28	1.98
45679350--45679380	11	2.8	11	100	0	62	25	29	6	38	1.81
45679709--45679769	25	2.4	25	88	0	86	47	13	19	19	1.82
45679889--45679967	26	3.0	26	85	3	95	39	18	22	18	1.93
45679919--45679984	26	2.6	26	83	7	64	37	19	24	18	1.93
45680125--45680185	22	2.8	22	82	0	68	32	21	26	19	1.97
45682032--45682256	40	5.6	40	82	2	263	23	26	24	26	2.00
45681996--45682256	80	3.3	80	80	3	276	24	25	23	26	2.00
45684037--45684397	27	13.4	27	85	0	416	24	20	18	36	1.95
45684037--45684397	81	4.5	81	86	0	488	24	20	18	36	1.95
45684390--45684863	27	17.6	27	75	8	376	32	10	17	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45684427--45684863	241	1.8	243	89	2	691	32	10	17	38	1.85
45686703--45686940	48	4.9	49	80	5	270	26	18	30	25	1.98
45686703--45686937	96	2.4	96	86	1	301	26	17	30	25	1.98
45688510--45688756	122	2.0	123	96	0	451	27	12	20	39	1.88
45692937--45692968	14	2.2	15	94	5	57	25	0	18	56	1.42
45694106--45694216	44	2.5	44	83	4	143	27	18	26	28	1.98
45695776--45695894	46	2.6	46	82	9	136	26	30	16	26	1.97
45695874--45695991	46	2.5	44	84	10	130	22	31	17	27	1.97
45695776--45695992	92	2.3	92	79	9	217	24	30	17	27	1.97
45701101--45701196	29	3.3	29	88	1	131	25	14	32	28	1.95
45702059--45702104	18	2.4	19	78	7	58	23	8	4	63	1.42
45704682--45704793	46	2.4	47	81	12	151	26	31	16	25	1.97
45708345--45708383	20	2.0	20	85	5	53	61	17	2	17	1.46
45716893--45717149	40	6.5	40	88	4	353	25	28	23	22	2.00
45727001--45727156	39	4.0	39	85	9	210	25	30	22	21	1.98
45727001--45727156	78	2.0	78	91	2	251	25	30	22	21	1.98
45730410--45730593	67	2.8	64	76	8	194	29	16	30	23	1.96
45739858--45739957	42	2.3	43	81	5	123	29	20	22	29	1.98
45748756--45748953	43	4.6	43	89	0	279	31	30	24	12	1.92
45748743--45748974	86	2.7	86	82	1	288	31	31	23	13	1.94
45748951--45749108	75	2.1	76	86	1	228	33	24	19	22	1.97
45748951--45749106	38	4.1	38	89	1	224	33	24	19	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45755055--45755116	31	2.0	32	87	3	90	20	24	19	35	1.96
45764978--45765005	14	2.0	14	100	0	56	28	14	14	42	1.84
45765153--45765177	6	4.2	6	100	0	50	0	64	0	36	0.94
45769205--45769713	49	10.6	48	93	1	821	32	9	29	28	1.88
45769832--45769910	37	2.1	37	90	0	122	24	18	31	25	1.98
45772858--45772900	18	2.6	16	79	13	50	48	0	0	51	1.00
45772863--45772905	18	2.4	18	92	0	68	48	0	2	48	1.14
45772981--45773018	19	2.0	19	100	0	76	47	15	10	26	1.78
45785435--45785563	48	2.7	48	95	0	222	27	20	29	22	1.98
45785541--45785588	25	1.9	25	91	0	78	29	18	31	20	1.97
45785693--45785823	48	2.7	49	82	4	167	28	20	29	22	1.98
45796370--45796495	46	2.7	46	96	0	225	20	22	27	29	1.98
45803877--45804049	46	3.7	46	77	14	185	21	19	27	30	1.98
45803873--45804044	93	1.8	93	91	2	283	21	19	29	29	1.98
45807053--45807274	40	5.6	40	84	8	283	25	28	21	24	1.99
45807055--45807270	119	1.8	120	85	7	305	25	27	21	25	2.00
45809664--45809719	11	5.5	11	71	16	57	35	12	19	32	1.89
45809653--45809719	20	3.3	20	93	0	116	34	11	20	32	1.90
45809771--45809843	23	3.1	23	90	3	110	28	19	19	32	1.96
45809770--45809850	24	3.4	24	87	5	119	29	18	20	30	1.97
45816220--45816360	76	1.9	76	98	0	273	39	23	15	21	1.91
45817095--45817142	23	2.1	23	100	0	96	33	16	20	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45850968--45851089	43	2.9	42	78	7	138	30	23	14	31	1.95
45857494--45857853	180	2.0	180	92	0	603	31	23	25	18	1.97
45860241--45860286	18	2.6	18	100	0	92	26	17	0	56	1.41
45879251--45879295	15	3.1	14	90	6	63	22	15	6	55	1.63
45888091--45888361	40	6.8	40	91	2	431	25	21	29	23	1.99
45888091--45888361	118	2.3	120	89	3	431	25	21	29	23	1.99
45896471--45896690	39	5.9	38	83	12	260	25	21	29	22	1.99
45896471--45896690	111	2.0	114	87	6	324	25	21	29	22	1.99
45896471--45896690	74	2.9	76	84	9	258	25	21	29	22	1.99
45904907--45905136	40	5.8	40	91	1	327	25	21	28	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255