genome.fa.s4.2.7.7.80.10.50.1000.211.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  211  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70652476--70652504	15	1.9	15	100	0	58	75	0	0	24	0.80
70652500--70652613	30	3.9	29	80	8	117	29	22	3	43	1.70
70652529--70652606	28	2.8	28	86	5	104	32	21	2	43	1.66
70652515--70652613	28	3.5	27	78	13	101	29	24	2	44	1.65
70652515--70652625	28	3.9	28	76	14	93	32	22	1	43	1.64
70652959--70653010	19	2.9	19	86	11	74	69	0	30	0	0.89
70652974--70653019	19	2.4	19	85	3	65	76	0	23	0	0.79
70653295--70653360	15	4.4	14	77	20	55	83	0	16	0	0.65
70653295--70653369	8	9.8	8	81	18	63	81	0	18	0	0.69
70653295--70653370	23	3.3	22	80	12	91	81	0	18	0	0.69
70653300--70653371	35	2.0	37	89	5	112	80	0	19	0	0.71
70653848--70653893	16	2.8	17	90	6	76	32	13	10	43	1.78
70663997--70664037	21	2.0	21	90	0	64	34	4	2	58	1.32
70668373--70668421	23	2.1	23	92	0	80	28	20	14	36	1.92
70675754--70675792	5	7.8	5	94	0	69	15	20	23	41	1.90
70676856--70676888	12	2.8	12	95	0	57	33	30	0	36	1.58
70678305--70678330	4	6.5	4	100	0	52	23	0	0	76	0.78
70679020--70679067	18	2.8	17	77	3	51	47	0	2	50	1.12
70680824--70680904	22	3.7	22	78	3	83	19	28	18	33	1.96
70683122--70683297	89	2.0	87	93	2	298	43	21	6	29	1.77
70684580--70684671	44	2.1	44	100	0	184	15	15	15	54	1.72
70689597--70689621	10	2.5	10	100	0	50	28	0	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70691273--70691310	19	2.0	19	100	0	76	36	15	0	47	1.46
70700302--70700341	20	2.0	20	95	0	71	32	25	27	15	1.95
70712300--70712368	31	2.3	31	85	7	88	43	11	10	34	1.75
70718048--70718089	20	2.1	20	90	0	66	23	0	2	73	0.94
70724502--70724538	17	2.2	16	86	13	56	29	0	2	67	1.04
70725816--70725887	3	24.0	3	97	0	135	0	31	0	68	0.90
70732874--70732935	19	3.3	19	81	0	79	35	24	19	20	1.96
70741376--70741413	17	2.2	17	86	9	51	7	7	10	73	1.24
70741601--70741641	19	2.1	20	86	4	57	34	0	2	63	1.08
70742691--70742843	20	7.5	20	70	11	96	29	4	0	65	1.17
70742691--70742843	10	15.0	10	71	16	84	29	4	0	65	1.17
70742788--70742842	28	2.0	28	82	7	67	27	3	0	69	1.05
70744289--70744344	24	2.3	25	81	6	71	66	7	0	26	1.18
70744301--70744365	19	2.9	23	84	13	75	67	6	0	26	1.13
70749658--70749720	21	2.9	21	71	15	56	36	0	1	61	1.05
70751613--70751658	18	2.6	17	86	6	65	67	2	0	30	1.03
70754642--70754681	19	2.1	19	95	0	71	15	25	15	45	1.84
70757972--70758012	21	2.0	21	90	0	64	29	21	29	19	1.98
70771656--70771683	9	3.1	9	100	0	56	64	0	0	35	0.94
70771872--70771924	20	2.7	19	78	18	56	37	0	28	33	1.58
70776794--70776992	100	2.0	101	91	1	328	28	25	15	30	1.95
70788676--70788899	79	2.8	77	82	8	254	25	27	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70788676--70788899	40	5.7	40	84	6	253	25	27	20	25	1.99
70796606--70796826	77	2.8	77	82	11	229	24	27	22	25	2.00
70796606--70796826	39	5.7	40	85	8	253	24	27	22	25	2.00
70799240--70799358	46	2.6	46	87	2	159	20	18	29	31	1.96
70800756--70800860	36	2.9	36	73	8	106	31	21	23	22	1.98
70800758--70800915	72	2.2	71	85	7	221	33	20	22	23	1.97
70801016--70801054	2	19.5	2	100	0	78	51	48	0	0	1.00
70801437--70801508	23	3.2	23	76	2	74	36	18	9	36	1.83
70802471--70802508	19	2.0	19	100	0	76	42	5	36	15	1.70
70802813--70802848	17	2.2	16	90	5	54	0	19	0	80	0.71
70807667--70807702	3	12.0	3	88	11	56	33	0	2	63	1.08
70812237--70812461	111	2.0	110	91	0	360	45	16	10	27	1.80
70817255--70817332	14	5.4	14	69	23	54	73	2	19	5	1.14
70817295--70817335	20	2.0	20	85	0	55	78	0	21	0	0.76
70817295--70817335	14	2.9	15	85	7	59	78	0	21	0	0.76
70818058--70818113	16	3.5	15	75	24	53	33	1	16	48	1.56
70820810--70820855	24	1.9	24	100	0	92	63	8	4	23	1.42
70821460--70821484	8	3.1	8	100	0	50	76	0	0	24	0.80
70825896--70826054	47	3.4	47	83	3	178	26	15	25	32	1.95
70830564--70830589	5	5.2	5	100	0	52	19	0	0	80	0.71
70836539--70836657	48	2.5	48	83	4	141	43	5	10	40	1.62
70839728--70839766	16	2.4	16	83	8	53	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70839932--70839990	17	3.4	17	71	4	55	37	1	0	61	1.07
70842485--70842533	25	2.0	25	95	0	89	40	18	6	34	1.75
70847163--70847216	25	2.2	25	96	0	99	42	12	9	35	1.75
70850402--70850452	26	2.0	24	85	7	66	13	9	1	74	1.15
70850402--70850452	25	2.1	24	82	10	59	13	9	1	74	1.15
70850681--70850721	21	1.9	22	85	14	59	78	2	4	14	1.03
70850682--70850728	25	2.0	23	84	16	60	78	2	4	14	0.99
70852070--70852110	22	2.0	22	85	9	59	41	4	2	51	1.36
70852079--70852138	20	2.8	21	80	10	59	38	5	5	51	1.45
70852099--70852137	20	1.9	21	89	5	62	33	5	5	56	1.43
70856761--70856835	9	8.7	9	71	19	61	46	0	1	52	1.09
70856762--70856835	17	4.4	17	78	11	80	45	0	1	52	1.09
70856769--70856840	26	2.8	26	75	12	76	43	0	2	54	1.15
70857229--70857349	62	2.0	62	93	0	206	38	14	11	36	1.82
70857245--70857344	32	3.2	32	72	11	107	41	14	10	35	1.79
70857745--70857783	14	2.8	14	92	0	60	43	15	0	41	1.46
70857875--70857921	23	2.0	23	84	8	60	31	23	6	38	1.80
70858445--70858491	12	3.8	12	80	11	51	4	23	0	72	1.02
70858749--70858796	18	2.7	19	78	15	59	58	12	2	27	1.46
70859258--70859310	21	2.6	20	74	11	54	28	3	1	66	1.20
70860790--70860869	41	2.0	41	89	0	124	52	1	8	37	1.41
70862579--70862665	23	3.8	23	80	7	88	25	27	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70864090--70864123	17	2.1	17	88	5	52	23	0	5	70	1.09
70864738--70864770	11	2.9	12	86	13	52	66	0	0	33	0.92
70866541--70866606	30	2.2	29	86	2	87	36	15	12	36	1.84
70870761--70870965	101	2.0	101	93	0	347	21	13	21	43	1.87
70874052--70874131	40	2.0	40	87	0	115	17	13	31	37	1.89
70877250--70877305	26	2.2	26	80	6	60	60	5	7	26	1.44
70877251--70877389	25	5.3	26	71	8	86	59	4	7	28	1.43
70877290--70877329	21	1.9	21	89	0	62	60	7	2	30	1.38
70877260--70877323	26	2.5	26	84	2	76	59	6	4	29	1.42
70877344--70877472	23	5.5	24	72	13	99	56	3	5	34	1.38
70877752--70877790	16	2.4	16	86	0	51	43	28	5	23	1.75
70877953--70878006	18	3.3	18	66	28	57	20	7	50	22	1.73
70877949--70878016	30	2.3	30	97	0	127	16	5	52	25	1.65
70879898--70880073	46	3.8	46	77	14	191	19	19	30	30	1.97
70879895--70880066	93	1.8	93	93	2	301	20	20	30	29	1.97
70896003--70896032	3	10.0	3	100	0	60	33	0	0	66	0.92
70898583--70898628	24	1.9	24	82	8	58	45	23	2	28	1.65
70899167--70899206	20	2.0	20	90	0	62	65	5	0	30	1.14
70899423--70899474	26	2.0	26	84	0	68	44	1	1	51	1.23
70903416--70903467	27	1.9	27	84	7	70	25	21	17	36	1.94
70907205--70907257	18	2.9	19	81	15	67	69	3	3	22	1.20
70907205--70907264	19	3.2	17	77	15	57	68	3	3	25	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70912485--70912589	41	2.5	41	77	10	106	32	23	17	26	1.96
70913023--70913050	13	2.2	13	100	0	56	35	25	7	32	1.83
70923196--70923231	15	2.4	15	95	0	63	41	11	5	41	1.64
70923211--70923435	121	1.9	121	98	0	432	40	4	9	45	1.55
70925890--70926060	46	3.7	46	92	1	263	40	13	23	22	1.89
70933894--70933920	8	3.4	8	100	0	54	40	37	0	22	1.54
70934593--70934755	6	27.2	6	100	0	326	50	16	0	33	1.46
70935803--70935963	45	3.7	44	77	8	161	31	27	14	26	1.95
70937058--70937086	14	2.0	15	93	6	51	51	20	0	27	1.47
70940501--70940564	28	2.5	24	87	10	83	53	29	0	17	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255