genome.fa.s4.2.7.7.80.10.50.1000.200.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  200  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66624410--66624558	41	3.6	41	76	13	146	30	25	18	25	1.98
66628346--66628380	16	2.2	16	94	0	61	51	22	20	5	1.68
66628604--66628705	29	3.6	29	82	1	116	29	16	26	27	1.97
66633716--66633741	3	8.7	3	100	0	52	34	0	0	65	0.93
66635716--66635752	16	2.2	17	90	4	58	51	32	5	10	1.60
66636820--66636862	8	5.4	8	78	10	52	51	20	20	6	1.71
66636820--66636862	16	2.7	16	88	0	68	51	20	20	6	1.71
66636971--66637006	18	1.9	19	88	5	56	22	16	38	22	1.93
66637078--66637185	29	3.9	27	83	9	128	25	16	30	26	1.97
66637087--66637194	27	3.8	28	80	8	112	25	16	31	25	1.97
66640494--66640676	91	2.0	91	100	0	366	33	21	18	26	1.97
66647822--66648023	40	5.1	40	87	4	268	26	28	23	22	1.99
66664018--66664234	40	5.4	40	86	4	264	26	28	22	22	1.99
66668218--66668299	24	3.4	24	88	5	112	31	23	14	30	1.94
66668350--66668408	20	3.0	20	97	0	109	30	20	11	37	1.89
66668349--66668415	20	3.3	20	91	0	107	31	20	11	35	1.89
66674411--66674509	42	2.3	42	82	5	119	32	25	16	26	1.96
66674388--66674504	43	2.8	41	78	10	119	32	25	16	25	1.96
66686319--66686587	56	4.8	56	86	0	367	27	14	24	34	1.94
66689293--66689354	26	2.2	28	77	11	74	27	20	11	40	1.87
66689680--66689730	18	2.8	18	81	0	66	23	13	17	45	1.84
66703167--66703367	108	1.8	109	90	4	325	23	23	17	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66703120--66703371	55	4.7	54	80	5	248	23	23	17	36	1.95
66706014--66706109	41	2.3	41	82	7	104	30	13	25	31	1.94
66707875--66708250	43	8.8	44	80	6	366	30	26	15	27	1.96
66707867--66708250	86	4.5	85	84	1	482	30	26	15	27	1.96
66707867--66708250	129	3.0	129	86	1	511	30	26	15	27	1.96
66709541--66709622	27	3.0	27	85	7	112	31	21	25	20	1.98
66709523--66709622	28	3.6	27	83	5	112	31	22	26	21	1.98
66709728--66709819	28	3.3	28	96	0	166	31	7	27	33	1.85
66719218--66719361	55	2.6	54	80	6	139	26	33	25	14	1.94
66722553--66722596	22	2.0	22	100	0	88	22	27	22	27	1.99
66735375--66735497	65	1.9	65	96	0	228	25	14	17	42	1.88
66736609--66736994	43	9.0	43	86	2	479	29	27	16	27	1.97
66742050--66742114	28	2.3	28	89	5	96	33	30	6	29	1.82
66742230--66742301	27	2.6	27	86	4	99	23	26	18	31	1.97
66742220--66742309	28	3.2	27	82	7	110	21	24	22	32	1.98
66742230--66742320	27	3.2	28	82	4	94	23	26	18	31	1.97
66742220--66742334	55	2.1	56	82	8	137	20	24	20	34	1.96
66747088--66747257	46	3.7	46	78	11	152	27	19	31	21	1.97
66749211--66749336	47	2.7	47	86	0	153	22	15	28	34	1.94
66751902--66751957	30	1.9	29	85	7	78	16	17	26	39	1.91
66760033--66760157	39	3.2	39	90	2	198	21	23	26	28	1.99
66762628--66762718	35	2.6	34	83	11	114	42	16	16	24	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66768226--66768351	46	2.8	43	83	7	135	26	19	31	22	1.98
66771069--66771167	44	2.3	44	81	5	123	31	25	17	26	1.97
66779995--66780023	13	2.2	13	100	0	58	31	0	13	55	1.39
66785467--66785499	6	5.5	6	96	0	57	15	3	0	81	0.80
66785467--66785506	18	2.2	18	86	0	53	17	5	0	77	0.94
66790439--66790471	13	2.6	13	90	4	50	48	12	0	39	1.40
66807299--66807377	40	2.0	40	92	0	131	22	13	31	31	1.93
66810411--66810470	29	2.1	29	100	0	120	26	16	23	33	1.96
66819132--66819403	48	5.7	48	80	9	272	25	19	30	24	1.98
66819123--66819403	96	2.9	95	81	5	325	25	19	30	24	1.98
66833527--66833652	46	2.7	46	90	2	182	29	24	23	23	1.99
66834074--66834133	30	2.0	30	90	0	93	30	25	8	36	1.85
66840765--66840890	46	2.7	46	91	0	189	28	25	23	23	1.99
66845607--66845728	55	2.2	55	82	2	138	24	30	27	18	1.98
66851289--66851464	46	3.8	46	77	14	191	20	20	29	29	1.98
66851286--66851457	93	1.8	93	92	2	292	20	20	29	28	1.98
66858867--66859042	46	3.8	46	75	11	171	22	19	27	30	1.98
66858864--66859035	93	1.8	93	90	2	274	23	20	27	29	1.99
66863374--66863400	13	2.1	13	100	0	54	14	33	29	22	1.94
66864358--66864432	18	4.1	18	69	23	57	28	2	1	68	1.12
66864423--66864467	16	2.8	16	83	13	56	40	0	0	60	0.97
66864415--66864474	23	2.6	23	78	5	68	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66864519--66864575	19	3.1	18	80	14	64	31	3	1	63	1.22
66864513--66864561	17	2.6	19	84	9	57	30	6	2	61	1.32
66864679--66864797	19	6.3	19	66	23	63	31	4	2	62	1.28
66864665--66864725	31	2.0	30	87	3	86	27	3	0	68	1.05
66871304--66871360	10	5.4	10	73	19	53	82	0	10	7	0.84
66871304--66871360	21	2.7	21	78	10	62	82	0	10	7	0.84
66872250--66872706	44	10.4	44	75	8	378	31	16	24	27	1.96
66872249--66872595	132	2.6	131	90	3	536	31	15	24	27	1.96
66872343--66872701	176	2.0	176	93	0	619	30	16	25	27	1.96
66872722--66873207	205	2.4	205	88	2	710	30	19	20	29	1.97
66873125--66873287	87	1.9	87	90	0	263	28	15	25	31	1.96
66874940--66874965	11	2.4	11	100	0	52	34	0	0	65	0.93
66874850--66875032	79	2.3	76	75	10	174	31	3	1	63	1.20
66876665--66876720	24	2.3	25	84	6	71	67	7	0	25	1.15
66876685--66876731	17	2.7	18	74	12	53	68	4	0	27	1.08
66878163--66878406	51	4.9	49	87	2	317	26	20	24	28	1.99
66878163--66878406	100	2.4	100	86	2	312	26	20	24	28	1.99
66881524--66881587	31	2.1	31	90	0	101	25	23	15	35	1.94
66881781--66881969	24	8.0	24	82	5	215	27	20	21	30	1.98
66881802--66881969	47	3.6	47	86	2	239	27	19	21	30	1.98
66882019--66882057	20	2.0	20	100	0	78	30	20	12	35	1.90
66882020--66882064	20	2.2	20	92	0	72	31	22	13	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66882101--66882148	25	1.9	25	91	0	78	27	12	25	35	1.92
66884426--66884516	44	2.1	44	97	0	173	45	16	9	28	1.79
66893929--66893972	10	4.1	10	80	13	52	72	0	9	18	1.10
66899848--66899890	18	2.5	17	82	14	52	74	4	2	18	1.10
66902715--66902756	19	2.2	19	95	0	75	26	19	21	33	1.97
66904880--66904978	42	2.3	42	79	5	119	33	22	17	27	1.96
66904869--66904982	43	2.7	44	78	8	137	32	23	17	26	1.97
66913592--66913783	40	4.8	40	87	1	163	27	26	20	25	1.99
66924585--66924802	40	5.5	40	89	1	305	22	23	27	25	2.00
66936988--66937139	27	5.6	27	93	3	241	26	14	28	30	1.95
66936988--66937139	55	2.8	55	93	0	250	26	14	28	30	1.95
66938783--66938835	28	1.9	27	88	3	79	16	26	7	49	1.73
66951460--66951489	12	2.5	12	100	0	60	33	6	6	53	1.53
66951514--66951574	24	2.4	25	83	5	70	31	1	1	65	1.12
66951607--66951659	18	3.2	17	86	7	65	33	1	0	64	1.05
66952563--66952621	29	2.0	29	87	6	84	49	3	0	47	1.18
66957440--66957488	21	2.3	22	86	10	75	34	2	2	61	1.19
66957503--66957910	224	1.8	223	87	5	606	34	11	10	42	1.76
66958213--66958260	24	2.0	25	87	4	71	25	18	8	47	1.76
66960935--66961043	47	2.3	46	87	7	150	27	29	10	33	1.89
66967011--66967263	68	3.7	68	81	2	319	34	19	19	26	1.96
66973515--66973738	40	5.7	40	84	5	260	25	28	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66973515--66973685	79	2.2	80	87	4	240	26	29	20	23	1.99
66973515--66973738	79	2.8	79	81	6	229	25	28	21	24	1.99
66973517--66973736	119	1.8	119	81	5	275	25	28	21	25	1.99
66974865--66975040	56	3.1	56	98	0	334	23	22	9	44	1.81
66981509--66981729	119	1.9	120	83	6	297	25	27	21	25	1.99
66981507--66981731	40	5.6	41	84	7	268	26	27	21	25	1.99
66982859--66982978	56	2.1	56	98	0	231	22	23	9	45	1.81
66984742--66985065	131	2.5	132	82	2	384	34	19	18	27	1.95
66990597--66990747	72	2.1	71	91	2	241	30	29	17	23	1.97
66990597--66990784	72	2.6	71	86	7	227	30	30	17	20	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255