genome.fa.s4.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  193  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64180194--64180289	32	3.0	32	87	0	138	22	12	21	42	1.87
64217415--64217459	21	2.1	22	91	4	74	35	28	26	8	1.87
64217411--64217469	21	2.9	20	80	5	66	30	25	30	13	1.94
64218581--64218890	47	6.7	47	79	15	276	22	29	19	27	1.98
64218580--64218890	46	6.7	46	79	10	271	22	29	19	27	1.98
64218580--64218893	94	3.4	95	80	11	316	22	29	19	27	1.98
64225537--64225575	19	2.1	19	85	4	53	46	15	0	38	1.46
64226260--64226287	5	5.6	5	100	0	56	57	0	0	42	0.99
64226918--64226956	20	2.0	20	100	0	78	30	41	20	7	1.80
64226949--64227052	29	3.6	29	78	10	113	19	33	25	22	1.97
64232402--64232430	12	2.3	13	94	5	51	24	0	0	75	0.80
64236249--64236284	18	2.0	18	100	0	72	55	11	11	22	1.66
64246005--64246047	18	2.4	18	84	0	59	37	23	23	16	1.94
64246716--64246798	42	2.0	42	90	0	130	43	15	12	28	1.83
64246826--64246869	19	2.4	18	92	7	79	45	13	2	38	1.56
64255816--64255901	18	4.8	18	76	7	77	17	18	20	43	1.89
64259718--64259803	40	2.2	40	95	0	154	47	12	6	32	1.68
64267912--64267960	21	2.3	20	82	10	53	53	14	14	18	1.74
64286742--64286771	8	3.8	8	90	0	51	3	23	20	53	1.60
64289367--64289461	47	2.0	46	91	2	154	43	13	13	29	1.83
64293116--64293175	29	2.1	29	96	0	111	16	5	13	65	1.44
64293665--64293689	13	1.9	13	100	0	50	48	8	0	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64296606--64296685	5	15.2	5	74	19	58	76	1	2	20	0.97
64296616--64296685	16	4.2	16	81	15	72	75	1	2	20	1.00
64296606--64296680	11	6.4	11	79	14	71	76	1	2	20	0.99
64316061--64316090	13	2.3	13	94	0	51	50	10	6	33	1.62
64321783--64321821	20	1.9	21	84	5	53	41	12	0	46	1.42
64332452--64332731	89	3.1	89	77	10	339	33	25	5	35	1.80
64332399--64332686	48	6.1	48	71	20	232	32	27	5	34	1.80
64332399--64332731	185	1.8	185	96	0	621	33	26	5	34	1.80
64335640--64335724	44	1.9	44	83	4	109	20	20	23	36	1.95
64335651--64335797	42	3.4	43	77	12	126	23	17	25	34	1.96
64337634--64337666	4	8.2	4	100	0	66	75	0	24	0	0.80
64338431--64338542	47	2.4	46	79	7	136	25	17	22	33	1.96
64344879--64344907	4	7.2	4	100	0	58	75	0	24	0	0.80
64352659--64352693	18	1.9	18	100	0	70	22	2	5	68	1.24
64354895--64354930	17	2.1	17	100	0	72	30	5	22	41	1.76
64356045--64356091	25	2.0	24	84	15	64	31	29	14	23	1.95
64357430--64357493	31	2.1	31	96	0	119	31	23	18	26	1.98
64359445--64359483	18	2.2	18	86	13	55	56	30	5	7	1.49
64373412--64373483	27	2.7	26	82	8	90	36	11	23	29	1.89
64386142--64386227	45	1.9	45	82	0	109	43	11	20	24	1.85
64386364--64386454	27	3.4	27	69	6	85	35	16	27	20	1.94
64389197--64389269	26	2.8	25	81	6	92	31	12	12	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64396412--64396523	31	3.6	31	82	2	136	44	5	17	32	1.72
64396407--64396523	62	1.9	62	83	3	155	43	5	18	31	1.74
64397120--64397328	105	2.0	105	94	0	364	30	17	15	36	1.91
64398730--64398756	13	2.1	13	100	0	54	14	37	33	14	1.88
64407806--64407847	21	2.1	20	82	8	50	40	21	7	30	1.80
64409727--64409763	18	2.1	18	100	0	74	43	16	10	29	1.82
64428462--64428646	48	3.9	47	69	16	148	28	19	23	28	1.98
64465788--64465965	27	6.6	27	80	3	160	28	29	16	25	1.97
64465809--64465964	82	1.9	81	84	3	206	28	29	16	25	1.97
64473778--64473955	27	6.6	27	80	3	160	28	29	16	25	1.97
64473799--64473954	82	1.9	81	84	3	206	28	29	16	25	1.97
64475773--64475834	22	2.6	24	77	7	65	27	4	22	45	1.73
64481448--64481512	32	2.1	31	91	2	103	38	15	0	46	1.46
64489839--64489900	18	3.6	18	79	12	67	48	3	0	48	1.17
64489851--64489907	18	3.2	18	78	14	64	43	1	0	54	1.10
64489827--64489916	35	2.4	37	78	16	96	45	2	0	52	1.13
64489905--64489940	16	2.2	17	90	5	56	47	0	0	52	1.00
64489906--64489964	20	3.2	18	80	17	59	44	1	0	54	1.10
64490985--64491030	19	2.3	21	92	7	78	58	0	2	39	1.10
64496333--64496407	33	2.2	35	92	4	127	48	0	6	45	1.29
64496881--64496941	29	2.1	29	82	8	72	45	0	11	42	1.40
64496905--64497036	34	3.9	33	79	11	133	41	0	13	44	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64497124--64497364	124	1.9	123	81	5	288	36	16	15	31	1.90
64500406--64500462	25	2.3	23	81	18	71	50	3	1	43	1.29
64500905--64500947	17	2.4	18	92	3	70	41	11	27	18	1.85
64507134--64507193	10	6.0	10	84	11	70	66	1	8	23	1.28
64510097--64510609	47	10.9	49	89	7	775	32	7	29	30	1.85
64510097--64510609	95	5.5	95	90	6	773	32	7	29	30	1.85
64510097--64510609	143	3.7	143	91	5	809	32	7	29	30	1.85
64511578--64511614	19	1.9	19	89	10	58	0	16	0	83	0.64
64511637--64511818	96	1.9	97	87	1	267	32	26	13	26	1.93
64512616--64512663	15	3.1	15	83	13	62	77	0	2	20	0.88
64516318--64516371	10	5.7	9	82	12	56	70	1	5	22	1.18
64520001--64520079	39	2.0	39	100	0	158	34	17	17	30	1.94
64522316--64522365	25	2.0	25	96	0	91	50	24	8	18	1.73
64527770--64527851	41	2.0	41	85	0	110	37	30	18	13	1.89
64527791--64527938	38	3.8	38	75	6	129	36	30	18	14	1.91
64539397--64539491	40	2.4	40	77	10	115	35	35	12	15	1.86
64543964--64544067	38	2.8	38	83	4	122	33	27	21	17	1.95
64543978--64544080	38	2.7	38	81	0	116	33	28	21	16	1.95
64545434--64545485	3	17.3	3	87	0	77	1	0	32	65	1.04
64548240--64548290	25	2.0	25	96	0	93	25	11	13	49	1.76
64548197--64548333	68	2.0	68	97	0	256	21	12	16	49	1.78
64548265--64548353	43	2.1	43	95	0	160	21	12	16	49	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64549614--64549940	27	12.1	27	77	4	284	34	21	18	24	1.96
64549614--64549940	54	6.1	54	83	3	347	34	21	18	24	1.96
64549614--64549940	81	4.0	81	79	2	345	34	21	18	24	1.96
64550077--64550156	27	3.0	25	80	8	79	22	21	22	33	1.97
64550077--64550146	27	2.6	27	82	8	81	22	21	22	32	1.98
64550344--64550409	33	2.0	33	84	0	87	28	22	22	25	1.99
64553606--64553646	21	2.0	21	85	9	57	24	0	4	70	1.06
64561679--64561738	30	2.0	30	90	0	93	38	8	25	28	1.84
64569129--64569188	30	2.0	30	90	0	93	38	8	25	28	1.84
64571854--64571898	14	3.4	14	81	12	58	31	11	22	35	1.89
64576477--64576520	14	3.3	13	84	12	54	31	11	22	34	1.90
64579091--64579127	12	3.2	12	92	3	58	35	0	16	48	1.46
64579091--64579127	18	2.1	17	90	5	56	35	0	16	48	1.46
64580007--64580060	16	3.5	15	78	9	56	68	1	1	27	1.10
64580007--64580055	21	2.3	20	76	10	53	69	2	2	26	1.10
64584206--64584252	21	2.2	21	80	0	58	17	10	19	53	1.72
64584354--64584398	20	2.2	20	84	7	56	42	11	20	26	1.85
64589532--64589636	43	2.5	42	76	1	111	34	15	20	29	1.94
64600207--64600236	16	1.9	16	93	6	53	50	20	0	30	1.49
64610888--64611072	79	2.3	81	83	7	227	24	22	28	24	1.99
64610889--64611072	40	4.6	40	82	9	207	25	22	28	24	1.99
64610941--64611105	79	2.1	79	82	6	192	26	20	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64618127--64618253	54	2.3	55	85	9	179	24	28	30	16	1.96
64637362--64637398	18	2.1	18	100	0	74	37	10	32	18	1.86
64639273--64639309	16	2.4	16	86	4	58	29	5	21	43	1.75
64643136--64643173	19	2.0	20	85	15	53	39	23	0	36	1.55
64643402--64643572	46	3.7	46	77	4	191	29	27	20	22	1.99
64643403--64643573	93	1.8	93	91	0	279	29	28	20	22	1.98
64651148--64651233	45	1.9	45	83	4	111	23	20	22	33	1.97
64651148--64651239	22	4.1	22	72	13	80	22	20	21	34	1.96
64665396--64665457	31	2.0	32	87	3	90	24	24	17	33	1.96
64670103--64670152	25	2.0	25	96	0	91	38	4	18	40	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255