genome.fa.s4.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  142  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45921227--45921346	52	2.2	55	89	5	192	51	10	20	17	1.74
45922464--45922672	39	5.4	39	87	5	266	25	21	28	25	1.99
45922894--45922937	22	2.0	21	83	16	54	31	18	13	36	1.90
45929241--45929362	52	2.3	53	92	4	201	50	9	22	17	1.74
45931653--45931836	40	4.6	40	82	9	207	23	23	27	25	2.00
45931705--45931869	79	2.1	79	84	6	210	25	21	27	25	1.99
45939843--45940027	40	4.6	39	83	5	203	23	22	27	26	1.99
45939896--45940060	79	2.1	79	84	6	210	25	21	27	25	1.99
45942075--45942241	40	4.2	40	87	5	225	23	22	27	26	1.99
45942075--45942241	79	2.1	79	85	6	223	23	22	27	26	1.99
45942476--45942519	22	2.0	21	83	16	54	31	18	13	36	1.90
45947364--45947483	43	2.8	43	79	8	129	33	23	14	29	1.94
45951314--45951347	12	2.8	12	90	0	50	14	38	20	26	1.91
45965378--45965783	47	8.6	47	93	1	643	32	8	29	29	1.86
45969174--45969269	40	2.4	40	92	0	156	21	18	27	32	1.97
45969174--45969307	40	3.3	40	86	0	151	22	17	26	32	1.96
45973348--45973384	18	2.1	18	89	0	56	21	24	0	54	1.45
45974159--45974272	25	4.7	24	78	12	117	62	0	1	35	1.06
45974165--45974298	73	1.9	70	84	7	180	61	0	2	35	1.12
45974159--45974302	56	2.6	53	77	17	127	61	0	2	35	1.10
45982589--45982783	54	3.6	53	77	4	185	18	24	19	37	1.94
45995280--45995349	27	2.6	27	93	2	104	31	27	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45995280--45995377	28	3.5	28	88	2	126	31	27	14	26	1.95
45998102--45998222	58	2.1	59	88	1	181	24	15	24	34	1.95
45998260--45998306	24	2.0	24	86	0	67	17	25	36	21	1.94
46006005--46006129	43	3.0	42	74	14	121	18	36	25	20	1.95
46006057--46007234	43	27.6	41	78	12	308	17	32	33	15	1.92
46006050--46007234	85	13.9	85	85	4	1100	17	32	33	15	1.92
46006050--46007234	128	9.3	128	84	4	1342	17	32	33	15	1.92
46007444--46007514	24	2.9	25	79	6	83	23	35	32	8	1.85
46014090--46014210	58	2.1	59	90	1	190	24	18	23	33	1.97
46014247--46014298	24	2.2	24	85	0	68	17	25	42	15	1.88
46016905--46017129	40	5.7	40	87	5	296	24	22	27	25	2.00
46016905--46017162	119	2.2	119	81	8	285	25	21	27	25	2.00
46028422--46028546	41	3.4	39	75	22	144	20	20	24	36	1.95
46028421--46028555	69	1.9	74	90	7	226	20	19	23	37	1.95
46040688--46040813	3	42.7	3	67	7	53	58	0	9	31	1.30
46041018--46041066	23	2.1	23	88	0	71	65	4	6	24	1.33
46041105--46041152	25	1.9	25	87	8	71	64	2	2	31	1.16
46041071--46041154	28	3.1	28	75	20	79	60	3	4	30	1.34
46041023--46041154	57	2.3	55	76	13	126	59	3	7	28	1.42
46048947--46048982	18	1.9	18	88	5	54	47	5	25	22	1.73
46055416--46055594	46	3.8	49	78	13	189	29	28	20	21	1.98
46055423--46055594	93	1.8	93	89	0	272	29	28	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46058556--46058598	20	2.1	20	86	4	59	81	2	2	13	0.89
46068346--46068517	40	4.3	40	88	2	222	25	21	27	25	1.99
46068346--46068517	79	2.2	79	84	3	220	25	21	27	25	1.99
46068373--46068550	79	2.2	80	80	3	191	25	21	28	24	1.99
46070165--46070219	27	2.0	27	96	0	101	18	20	18	43	1.88
46070644--46070668	13	1.9	13	100	0	50	16	32	44	8	1.76
46074811--46074917	55	1.9	55	86	0	151	25	26	24	24	2.00
46078921--46079147	40	5.7	40	95	0	400	22	28	19	29	1.98
46087696--46087922	40	5.7	40	95	0	409	22	28	20	29	1.98
46093857--46095770	968	2.0	968	93	0	3290	35	24	14	26	1.93
46099514--46099649	43	3.2	42	79	7	123	31	28	16	23	1.96
46099551--46099649	42	2.3	42	84	8	128	32	28	16	23	1.96
46107323--46107363	22	1.9	21	85	5	55	31	21	36	9	1.86
46113388--46113594	40	5.2	40	89	4	296	26	27	22	24	2.00
46114729--46114850	53	2.3	54	94	4	212	16	21	9	52	1.72
46130656--46130860	40	5.2	40	87	4	285	26	27	21	24	2.00
46131992--46132111	53	2.2	54	94	4	208	16	21	10	51	1.73
46138691--46138897	40	5.2	40	92	4	323	25	27	23	23	2.00
46140032--46140159	53	2.4	54	92	5	206	15	21	9	53	1.69
46141947--46142079	40	3.3	40	92	4	198	27	27	20	24	1.99
46141947--46142130	80	2.3	81	84	6	232	26	27	21	24	1.99
46143909--46144029	44	2.8	43	80	13	115	21	20	25	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46148465--46148529	31	2.1	31	94	0	112	49	9	10	30	1.69
46150945--46150972	12	2.3	12	100	0	56	7	21	42	28	1.79
46153986--46154016	8	3.9	8	100	0	62	22	0	12	64	1.27
46156505--46156670	46	3.6	46	78	6	156	30	21	27	21	1.98
46156542--46156767	47	4.8	48	75	11	157	29	20	29	21	1.98
46171049--46171082	17	2.0	17	100	0	68	35	11	17	35	1.87
46174340--46174510	46	3.7	46	78	7	159	28	18	31	21	1.97
46192020--46192147	56	2.2	56	76	13	127	30	19	15	34	1.93
46212367--46212445	41	1.9	41	97	0	149	36	11	15	36	1.83
46212976--46213032	30	1.9	30	92	0	96	42	7	24	26	1.80
46215280--46215324	21	2.1	21	100	0	90	40	13	24	22	1.90
46215549--46215613	28	2.3	28	82	12	80	24	16	32	26	1.96
46215903--46216188	27	10.7	26	77	7	252	39	20	9	30	1.84
46215903--46216186	54	5.3	54	81	4	281	40	20	9	29	1.84
46215924--46216188	80	3.3	81	85	3	340	39	20	9	30	1.84
46216182--46216233	27	1.9	27	84	0	68	36	19	15	28	1.92
46215903--46216215	134	2.3	132	77	10	339	39	21	9	29	1.84
46226849--46226875	9	3.0	9	100	0	54	33	22	0	44	1.53
46227037--46227078	20	2.1	20	86	0	57	35	11	2	50	1.52
46228795--46228833	20	2.0	20	100	0	78	46	12	10	30	1.75
46237773--46237904	58	2.3	56	78	8	133	30	22	15	31	1.95
46239595--46239632	19	2.0	19	100	0	76	26	21	5	47	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46243290--46243328	19	2.0	19	85	5	51	64	2	0	33	1.08
46255378--46255481	51	2.0	51	96	0	190	28	7	28	34	1.85
46258325--46258374	20	2.5	20	90	0	82	28	18	20	34	1.95
46258533--46258625	39	2.3	40	92	5	154	48	18	9	23	1.77
46261687--46261723	18	2.1	18	100	0	74	32	16	5	45	1.70
46264612--46264792	79	2.3	81	83	7	228	25	27	22	24	2.00
46264612--46264792	40	4.6	40	84	6	226	25	27	22	24	2.00
46272669--46272853	40	4.7	40	83	6	216	25	26	22	25	2.00
46272669--46272853	79	2.3	82	82	7	220	25	26	22	25	2.00
46275269--46275347	25	3.2	25	83	0	95	18	24	21	35	1.96
46276605--46276646	20	2.2	20	87	12	61	28	21	0	50	1.49
46276799--46276903	37	2.7	38	76	5	95	32	28	17	21	1.96
46277125--46277152	10	2.8	10	100	0	56	50	17	0	32	1.47
46277287--46277342	15	3.8	15	85	2	78	51	10	0	37	1.37
46278240--46278303	32	2.0	32	85	8	87	46	7	0	45	1.32
46278774--46278820	19	2.4	19	76	20	51	36	19	4	40	1.71
46279714--46279746	13	2.5	13	100	0	66	24	48	21	6	1.72
46282156--46282187	15	2.1	15	94	0	55	68	9	6	15	1.36
46282809--46282861	25	2.1	25	86	6	72	13	16	26	43	1.85
46283608--46284013	206	2.0	206	92	0	677	33	13	20	32	1.91
46286796--46286868	31	2.4	31	90	0	110	10	19	6	63	1.49
46289593--46289912	48	6.7	48	80	4	216	27	16	29	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46289583--46289912	96	3.4	94	77	5	304	26	15	29	27	1.96
46289593--46289854	144	1.8	144	81	3	330	27	16	29	26	1.97
46297359--46297785	48	8.9	47	78	7	326	28	18	28	25	1.98
46305852--46306062	40	5.3	40	89	4	239	23	20	27	28	1.99
46313657--46313735	38	2.1	38	100	0	158	29	2	21	46	1.64
46314357--46314381	9	2.8	9	100	0	50	92	0	0	8	0.40
46316205--46316505	47	6.4	47	93	0	494	32	8	30	28	1.88
46316628--46316702	37	2.0	37	84	5	98	24	20	29	26	1.99
46318468--46318619	40	3.8	41	89	3	211	24	21	28	25	1.99
46318468--46318639	80	2.2	80	84	3	213	23	20	27	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255