genome.fa.s4.2.7.7.80.10.50.1000.208.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  208  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69593934--69594032	26	3.8	26	88	4	146	27	24	22	26	2.00
69594177--69594268	42	2.2	42	88	3	132	29	13	22	34	1.92
69594292--69594399	31	3.5	31	80	9	107	30	18	25	25	1.98
69596595--69596694	27	3.7	28	82	9	118	41	19	10	30	1.84
69596700--69596899	81	2.5	81	84	0	249	30	24	6	39	1.80
69596698--69596901	27	7.6	27	87	0	221	30	23	6	39	1.80
69596797--69597045	27	9.2	27	80	3	133	36	22	8	33	1.84
69596813--69597017	54	3.8	54	81	3	162	36	21	7	34	1.83
69596700--69596926	81	2.8	81	80	2	197	30	22	7	39	1.81
69596878--69597120	81	3.0	79	72	9	202	38	19	9	32	1.85
69596878--69597101	54	4.1	53	76	8	173	39	20	8	31	1.83
69597052--69597107	27	2.1	26	87	9	78	37	12	12	37	1.81
69597161--69597247	27	3.2	27	91	3	131	33	16	27	22	1.95
69598052--69598149	26	3.8	26	89	1	153	24	25	23	26	2.00
69598294--69598385	42	2.2	42	88	0	130	29	14	21	34	1.93
69598409--69598487	31	2.5	31	88	8	124	30	18	25	25	1.98
69600183--69600298	50	2.4	50	94	2	209	32	5	0	62	1.18
69600209--69600295	40	2.2	40	84	10	108	31	5	0	63	1.18
69600180--69600298	60	2.0	60	80	6	134	32	5	0	62	1.17
69600155--69600298	10	14.4	10	71	15	66	32	4	0	61	1.22
69603012--69603042	14	2.2	14	100	0	62	25	0	29	45	1.54
69603381--69603413	12	2.8	12	100	0	66	9	24	48	18	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69609388--69609451	31	2.1	31	87	0	92	25	21	15	37	1.93
69609665--69609760	47	2.1	47	92	2	158	27	19	22	30	1.98
69609644--69609761	23	5.0	24	89	5	161	26	21	22	29	1.99
69609819--69609875	9	5.9	9	73	15	51	35	21	8	35	1.84
69609815--69609877	20	3.2	20	95	0	117	31	19	12	36	1.89
69614708--69614789	41	2.0	41	100	0	164	36	17	14	31	1.90
69614789--69614856	31	2.2	31	84	5	84	29	17	8	44	1.79
69624603--69624685	41	2.0	41	97	0	157	22	32	16	27	1.96
69629170--69629226	6	9.7	6	78	3	53	61	3	1	33	1.23
69668152--69668278	55	2.3	55	79	5	141	24	30	23	21	1.99
69669066--69669358	47	6.2	47	74	12	228	23	29	20	26	1.99
69669089--69669358	94	2.9	92	77	9	271	23	29	20	27	1.99
69675639--69675759	55	2.2	55	81	0	152	24	33	21	20	1.97
69676674--69676797	47	2.6	47	81	6	126	25	33	14	26	1.94
69683653--69683795	68	2.1	68	100	0	286	31	9	17	41	1.82
69690067--69690107	20	2.0	20	100	0	82	39	19	9	31	1.84
69696322--69696498	27	6.5	26	81	6	167	25	16	28	28	1.97
69696318--69696477	82	2.0	81	87	3	232	25	16	29	28	1.97
69696322--69696498	82	2.2	81	83	3	212	25	16	28	28	1.97
69704502--69704678	27	6.5	26	81	6	167	25	16	28	28	1.97
69704498--69704657	82	2.0	81	87	3	232	25	16	29	28	1.97
69704502--69704678	82	2.2	81	83	3	212	25	16	28	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69719652--69719683	16	2.0	16	100	0	64	37	12	25	25	1.91
69728986--69729043	21	2.8	21	86	0	80	27	13	27	31	1.94
69732129--69732154	11	2.4	11	100	0	52	73	0	0	26	0.84
69732256--69732336	9	8.8	9	72	14	67	33	3	3	59	1.33
69733888--69733969	15	5.3	15	66	28	55	52	1	1	45	1.16
69733876--69734003	65	2.0	65	93	3	224	52	1	2	43	1.23
69733988--69734067	33	2.4	32	80	11	90	65	3	3	27	1.27
69734930--69735045	60	1.9	60	83	0	151	25	15	23	35	1.94
69735638--69735785	66	2.2	66	93	0	260	26	27	27	19	1.99
69752183--69752215	13	2.6	13	90	4	50	48	12	0	39	1.40
69762543--69762782	119	2.0	119	92	0	399	33	19	15	31	1.93
69767201--69767281	23	3.6	23	84	3	110	14	27	22	35	1.93
69767458--69767532	9	8.9	9	73	19	54	42	6	12	38	1.68
69772559--69772604	22	2.1	22	100	0	92	41	0	30	28	1.56
69791389--69791414	9	2.9	9	100	0	52	30	0	23	46	1.53
69792434--69792555	50	2.4	51	88	1	183	33	17	22	26	1.96
69792535--69792648	31	3.7	31	91	0	192	26	20	27	26	1.99
69792647--69792675	7	4.1	7	100	0	58	44	13	27	13	1.82
69792682--69792821	49	2.9	48	85	5	158	30	14	24	31	1.94
69792777--69792891	42	2.7	43	86	4	162	30	13	26	28	1.94
69794720--69794745	11	2.4	11	100	0	52	46	11	15	26	1.80
69795232--69795268	17	2.1	18	95	5	67	35	10	0	54	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69795843--69795888	21	2.2	21	84	7	58	45	6	6	41	1.56
69797129--69797361	116	2.0	118	94	1	416	29	9	21	38	1.86
69802558--69802775	46	4.7	44	70	12	118	24	29	18	27	1.98
69818022--69818086	30	2.2	30	88	0	94	33	23	16	26	1.96
69818596--69818630	17	2.1	17	94	0	61	54	25	0	20	1.45
69822633--69822799	46	3.6	46	78	4	149	25	26	17	29	1.97
69826244--69826516	40	6.9	40	77	8	281	32	16	28	22	1.96
69832849--69832880	16	2.0	16	100	0	64	43	6	12	37	1.68
69840367--69840400	17	1.9	18	88	5	52	11	44	29	14	1.81
69849453--69849490	13	3.2	12	89	10	53	7	7	13	71	1.31
69850372--69850431	20	3.0	20	72	0	66	41	20	13	25	1.88
69850360--69850503	40	3.7	40	78	1	139	37	19	18	24	1.94
69855843--69855932	40	2.2	40	92	0	144	32	16	31	20	1.95
69855866--69855930	20	3.2	20	66	0	58	27	16	35	20	1.94
69856686--69856727	22	2.0	21	85	4	57	23	4	2	69	1.20
69863057--69863242	40	4.7	40	88	5	252	24	22	27	26	2.00
69863110--69863275	80	2.1	79	86	5	228	25	20	27	26	1.99
69868597--69868772	46	3.8	46	78	12	198	19	21	30	28	1.97
69868595--69868765	93	1.8	93	93	0	297	19	21	30	28	1.98
69871443--69871499	30	1.9	29	92	3	96	12	15	15	56	1.68
69877038--69877094	30	1.9	29	92	3	96	12	15	15	56	1.68
69880966--69881183	40	5.5	40	86	7	304	26	27	23	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69880966--69881177	76	2.7	78	86	7	288	27	26	23	22	1.99
69883192--69883367	46	3.8	46	75	15	166	21	19	28	30	1.97
69883188--69883360	93	1.9	93	90	2	276	21	20	29	28	1.98
69888680--69888727	14	3.4	14	80	11	53	72	6	4	16	1.20
69888704--69888755	7	7.4	7	79	12	54	78	0	1	19	0.84
69891676--69891826	28	5.4	28	92	1	223	25	11	28	33	1.92
69898677--69898729	26	2.0	26	92	0	88	33	37	9	18	1.83
69898703--69898819	43	2.7	43	87	0	171	27	30	17	23	1.97
69898951--69899004	13	4.2	13	79	6	56	66	5	1	25	1.23
69900287--69900537	138	1.8	137	94	2	450	50	13	9	27	1.71
69902307--69902346	19	2.1	19	100	0	80	5	15	25	55	1.60
69902399--69902473	29	2.7	27	72	22	64	42	6	1	49	1.37
69902437--69902470	18	1.9	18	88	5	52	44	2	2	50	1.32
69902678--69902728	7	7.6	7	76	8	52	47	31	0	21	1.51
69902678--69902728	13	3.8	13	75	14	59	47	31	0	21	1.51
69902678--69902728	20	2.5	20	80	0	66	47	31	0	21	1.51
69902896--69902934	14	2.8	14	92	0	60	56	30	0	12	1.37
69902947--69902997	21	2.4	22	75	15	52	47	19	3	29	1.68
69903512--69903644	41	3.3	41	89	1	187	18	21	24	35	1.96
69905803--69905849	16	2.6	17	83	12	51	57	0	0	42	0.98
69907088--69907211	66	1.9	65	80	6	142	45	16	25	12	1.83
69911407--69911438	16	2.0	16	93	0	55	9	25	0	65	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69913028--69913123	27	3.5	27	89	1	138	23	22	23	29	1.99
69918024--69918108	27	3.2	26	72	8	73	18	17	22	41	1.91
69933552--69933588	3	12.7	3	94	5	67	29	0	0	70	0.88
69934541--69934566	7	3.7	7	100	0	52	0	11	0	88	0.52
69934598--69934648	18	2.8	18	77	8	59	3	31	0	64	1.11
69935879--69935994	28	4.2	28	86	2	164	18	25	20	36	1.95
69938386--69938530	48	3.0	48	85	0	200	31	22	8	37	1.84
69944107--69944220	43	2.7	43	76	0	120	35	21	14	28	1.93
69947593--69947779	27	7.0	27	77	13	172	39	21	14	24	1.91
69950460--69950578	29	4.2	29	74	8	102	27	29	13	29	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255