genome.fa.s4.2.7.7.80.10.50.1000.223.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  223  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74093846--74093889	15	2.9	15	81	18	56	34	20	9	36	1.84
74093937--74093984	25	1.9	25	86	0	69	25	16	25	33	1.96
74097634--74097664	7	4.4	7	100	0	62	25	0	74	0	0.82
74098193--74098281	44	2.0	44	100	0	178	13	21	20	44	1.85
74098197--74098265	21	3.2	21	65	15	59	14	20	17	47	1.82
74102062--74102098	9	4.1	9	89	0	56	29	2	13	54	1.53
74121057--74121102	24	1.9	24	86	8	67	45	21	15	17	1.85
74121177--74121247	26	2.8	26	78	2	81	40	21	19	18	1.91
74139301--74139339	15	2.6	15	87	0	51	25	0	7	66	1.18
74139393--74139419	3	9.0	3	100	0	54	0	0	33	66	0.92
74139424--74139476	23	2.2	24	83	9	65	24	1	5	67	1.22
74141629--74141673	19	2.4	19	88	7	65	22	22	13	42	1.88
74144484--74144508	7	3.6	7	100	0	50	76	0	12	12	1.04
74146144--74146729	132	4.4	133	88	2	824	30	20	23	25	1.99
74146149--74146597	44	10.2	44	67	11	211	30	19	23	26	1.98
74146746--74146840	44	2.2	44	78	3	102	29	23	23	24	1.99
74146646--74146985	177	1.9	177	90	1	538	30	21	22	25	1.99
74148228--74148324	3	32.7	3	69	17	60	25	5	6	62	1.39
74148222--74148362	12	11.6	11	67	18	52	24	3	7	64	1.35
74148228--74148375	15	10.6	14	65	17	58	24	4	7	64	1.37
74148256--74148329	29	2.5	30	80	6	89	25	6	5	62	1.42
74148291--74148360	18	3.9	18	71	15	65	25	2	7	64	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74148326--74148353	9	3.1	9	100	0	56	21	0	10	67	1.20
74152434--74152541	26	4.2	26	91	2	164	37	22	7	33	1.82
74152948--74153019	31	2.4	30	74	4	72	36	8	12	43	1.73
74155353--74155400	24	2.0	24	88	8	71	43	0	0	56	0.99
74155359--74155409	24	2.1	24	82	13	61	45	0	1	52	1.12
74155951--74155989	21	1.9	20	89	5	60	38	12	5	43	1.65
74155951--74155990	20	2.0	20	85	9	55	40	12	5	42	1.64
74157240--74157326	42	2.1	42	100	0	174	25	9	11	54	1.66
74164814--74164858	22	2.0	22	82	8	54	33	2	0	64	1.06
74164815--74164891	28	2.8	27	82	9	86	33	1	0	64	1.01
74168208--74168248	13	2.8	16	82	17	54	43	2	0	53	1.13
74168230--74168265	18	1.9	18	88	5	54	58	0	0	41	0.98
74168229--74168306	29	2.6	29	78	19	79	53	0	0	46	1.00
74168258--74168307	16	3.2	16	70	18	52	52	0	0	48	1.00
74168239--74168304	29	2.2	30	86	10	91	54	0	0	45	0.99
74179177--74179277	51	2.0	51	84	0	130	31	14	10	42	1.81
74181470--74181503	15	2.3	15	89	0	50	41	5	23	29	1.78
74187651--74187683	7	4.7	7	96	0	57	63	0	0	36	0.95
74188729--74188767	17	2.2	18	86	4	53	48	0	0	51	1.00
74190126--74190176	23	2.3	23	77	16	54	39	1	1	56	1.22
74191069--74191131	30	2.2	27	86	8	81	58	12	6	22	1.56
74192300--74192325	7	3.7	7	100	0	52	26	26	30	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74198526--74198558	16	1.9	17	88	11	50	57	0	0	42	0.98
74201185--74201228	21	2.1	21	100	0	88	25	27	13	34	1.93
74211220--74211604	196	2.0	195	84	0	509	25	17	20	36	1.94
74213600--74213625	13	2.0	13	100	0	52	30	0	7	61	1.24
74214824--74214861	18	2.2	17	86	9	51	21	7	2	68	1.28
74218968--74219000	5	6.6	5	100	0	66	81	0	0	18	0.68
74220815--74220850	17	2.1	17	90	10	56	61	0	8	30	1.26
74223529--74223579	14	3.6	14	82	10	59	35	3	0	60	1.15
74230632--74230669	18	2.1	18	90	0	58	50	7	5	36	1.54
74237457--74237561	52	2.0	52	98	0	201	12	5	27	54	1.60
74237464--74237544	25	3.2	25	64	19	67	12	4	29	53	1.59
74246454--74246507	16	3.2	17	75	17	58	31	1	1	64	1.14
74252864--74252922	17	3.3	18	75	15	59	22	11	5	61	1.50
74252915--74253086	20	8.6	20	69	16	90	19	15	12	52	1.74
74253513--74253640	20	6.6	20	72	16	74	46	10	20	22	1.80
74254533--74254671	45	3.1	45	81	5	149	35	20	22	20	1.96
74255191--74255260	28	2.5	29	79	9	74	61	7	10	21	1.51
74255256--74255336	28	2.9	28	79	3	83	54	8	17	19	1.68
74255240--74255308	27	2.5	28	76	9	70	56	5	15	21	1.60
74264187--74264238	4	14.5	4	95	4	62	73	0	26	0	0.84
74264166--74264242	30	2.5	31	87	4	111	67	0	32	0	0.91
74264185--74264242	10	5.5	11	79	20	63	72	0	27	0	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74264166--74264229	27	2.4	26	89	2	92	65	0	34	0	0.93
74264369--74265006	101	6.2	102	90	3	917	28	0	14	57	1.39
74264401--74265003	204	3.0	202	90	2	888	28	0	14	57	1.40
74264982--74265018	17	2.3	16	90	9	58	32	0	8	59	1.27
74269045--74269229	79	2.3	81	83	7	218	26	27	21	24	1.99
74269045--74269229	40	4.7	40	83	6	216	26	27	21	24	1.99
74277014--74277197	40	4.6	40	78	10	198	25	27	21	25	2.00
74277014--74277196	79	2.3	80	82	7	212	25	27	21	25	1.99
74279391--74279471	21	4.0	21	87	3	103	43	18	20	17	1.88
74279391--74279471	42	2.0	40	87	4	117	43	18	20	17	1.88
74284323--74284400	27	2.9	27	86	0	102	25	25	28	20	1.99
74306089--74306146	27	2.1	27	81	9	64	18	24	20	36	1.95
74314022--74314150	47	2.8	47	86	3	172	21	16	27	34	1.95
74316141--74316180	14	2.9	14	84	0	53	25	10	30	35	1.88
74316496--74316543	21	2.3	21	85	0	60	25	33	25	16	1.96
74316510--74316573	21	3.0	21	83	0	74	18	31	34	15	1.93
74322427--74322470	21	2.2	20	88	12	63	47	2	0	50	1.13
74334137--74334204	35	1.9	35	81	0	82	27	4	19	48	1.68
74342675--74342741	5	13.6	5	79	20	79	40	0	0	59	0.97
74342675--74342741	21	3.1	22	89	10	104	40	0	0	59	0.97
74342683--74342742	7	8.6	7	85	14	88	41	0	0	58	0.98
74342810--74342842	6	5.3	6	96	3	57	81	0	18	0	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74344330--74344389	22	2.6	23	68	31	56	51	5	13	30	1.62
74344760--74344947	18	10.4	18	76	8	150	37	12	14	36	1.83
74344745--74344895	72	2.1	72	82	7	182	37	11	14	35	1.83
74344745--74345040	18	16.1	18	71	9	132	36	12	14	36	1.84
74345904--74345946	20	2.2	20	86	0	59	44	6	0	48	1.29
74346336--74346392	29	1.9	30	85	3	80	29	5	14	50	1.64
74349017--74349048	11	2.9	11	95	0	55	71	15	0	12	1.14
74353588--74353640	26	2.0	26	96	0	97	32	22	9	35	1.86
74360303--74360347	22	2.1	21	83	4	54	53	24	6	15	1.66
74362525--74362647	50	2.4	51	89	5	187	34	15	23	26	1.95
74362629--74362808	31	5.8	31	88	2	245	27	21	26	25	1.99
74362833--74362956	47	2.7	46	83	2	158	27	16	26	29	1.97
74362927--74363041	42	2.7	43	85	4	153	32	14	25	27	1.95
74364136--74364178	9	4.6	9	77	11	50	32	2	0	65	1.06
74364284--74364326	18	2.4	18	88	3	61	23	0	0	76	0.78
74364281--74364336	28	2.0	28	86	3	78	23	0	0	76	0.78
74364284--74364328	19	2.5	19	85	7	58	24	0	0	75	0.80
74365574--74365663	33	2.8	33	81	3	103	43	4	1	51	1.29
74365584--74365672	31	2.8	32	81	3	99	43	5	1	49	1.33
74370858--74370908	26	2.0	26	92	0	84	19	21	21	37	1.95
74374187--74374223	16	2.2	17	90	4	58	62	0	13	24	1.31
74378863--74379165	40	7.6	40	89	2	396	27	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74398389--74398427	20	2.0	20	89	0	60	15	5	2	76	1.06
74402906--74403152	86	2.9	85	82	6	211	24	29	19	25	1.98
74402986--74403152	43	3.9	43	94	0	255	22	30	21	25	1.99
74403000--74403199	86	2.3	86	82	5	235	24	28	21	25	1.99
74412740--74412773	16	2.1	17	94	5	61	73	0	26	0	0.83
74414387--74414535	53	3.0	50	83	11	198	18	18	23	40	1.91
74414387--74414546	47	3.3	47	85	7	187	18	18	22	40	1.92
74414675--74414945	18	14.6	18	71	14	167	34	12	16	36	1.87
74414663--74414865	72	2.8	72	80	6	189	34	11	15	37	1.85
74414886--74414954	36	1.9	36	84	0	93	36	10	15	37	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255