genome.fa.s4.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  157  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51223050--51223233	67	2.8	64	76	7	183	29	17	30	21	1.97
51227469--51227618	67	2.2	67	81	8	171	32	17	28	21	1.96
51227493--51227676	67	2.8	64	77	8	194	29	17	29	22	1.97
51238898--51239305	46	8.6	48	74	13	248	24	28	18	28	1.98
51238898--51239163	48	5.6	47	75	9	202	24	29	19	27	1.98
51252337--51252364	13	2.2	13	100	0	56	28	0	14	57	1.38
51253778--51253951	40	4.3	40	94	0	312	21	21	27	29	1.99
51253778--51253983	40	5.2	40	86	8	248	22	20	27	29	1.99
51261941--51262217	40	7.2	40	88	8	396	23	22	26	28	1.99
51262118--51262176	31	1.9	31	96	0	109	28	23	25	22	1.99
51262084--51262215	71	1.9	70	92	4	221	25	23	25	25	2.00
51274669--51274930	39	6.7	40	86	7	310	24	27	22	25	2.00
51296368--51298370	999	2.0	999	98	0	3907	33	22	18	24	1.97
51300143--51300193	26	2.0	26	100	0	102	19	35	19	25	1.95
51300145--51300200	26	2.2	26	93	0	94	17	41	16	25	1.89
51305196--51305289	46	2.0	46	95	0	170	39	2	23	35	1.67
51314364--51314490	29	4.5	28	81	7	132	25	33	14	25	1.95
51314363--51314493	57	2.3	57	82	5	149	25	32	14	26	1.95
51324056--51324090	16	2.2	16	89	0	52	11	11	17	60	1.59
51324564--51324612	24	2.0	24	100	0	98	40	24	18	16	1.90
51325445--51325481	18	2.1	18	94	0	65	35	16	16	32	1.91
51334185--51334306	61	2.0	61	100	0	244	29	19	22	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51347780--51347847	27	2.5	26	88	6	100	36	17	20	25	1.94
51348503--51348554	27	2.0	26	84	3	68	17	26	21	34	1.95
51355177--51355242	27	2.4	27	82	5	80	36	19	21	22	1.95
51374299--51374537	49	4.8	50	82	2	275	27	18	25	28	1.98
51376402--51376448	19	2.6	18	80	6	51	76	2	4	17	1.04
51386553--51386814	39	6.7	40	87	8	328	24	26	22	25	2.00
51386553--51386814	118	2.2	119	84	11	335	24	26	22	25	2.00
51403011--51403195	79	2.3	82	82	7	229	25	27	22	24	2.00
51403011--51403195	40	4.7	40	83	7	225	25	27	22	24	2.00
51404899--51405082	79	2.3	81	81	8	207	25	27	21	25	2.00
51404899--51405083	40	4.7	40	80	7	207	25	27	21	25	2.00
51407356--51407426	32	2.2	32	80	10	81	25	22	1	50	1.57
51407388--51407473	43	2.0	43	90	0	136	23	19	2	54	1.55
51408588--51408632	23	2.0	23	86	0	63	2	22	0	75	0.91
51413320--51413520	39	5.2	39	84	0	267	33	20	28	16	1.95
51413347--51413410	19	3.3	19	69	4	56	34	21	32	10	1.89
51413366--51413508	20	7.3	20	62	13	64	31	21	30	16	1.95
51413455--51413522	20	3.5	20	69	16	61	30	20	29	19	1.97
51419330--51419364	17	2.1	17	89	5	54	62	0	8	28	1.24
51421656--51422085	40	10.8	40	96	0	752	24	28	20	26	1.99
51423373--51423412	13	3.1	14	86	10	50	5	20	0	75	0.99
51429956--51430305	40	8.8	40	95	0	601	24	28	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51431593--51431635	15	3.1	14	86	6	52	6	18	0	74	1.04
51431594--51431635	14	3.1	14	83	10	52	7	16	0	76	1.00
51432891--51434039	206	5.6	206	87	3	1631	28	22	17	30	1.97
51442394--51442622	48	4.8	48	81	5	232	25	29	18	26	1.98
51442400--51442623	98	2.3	99	81	7	255	25	29	19	26	1.98
51444953--51445218	46	5.7	48	78	10	232	26	18	29	25	1.98
51445092--51445218	49	2.7	47	90	4	184	26	18	27	26	1.98
51444956--51445218	96	2.8	95	80	10	292	26	18	29	25	1.98
51448613--51450305	649	2.6	643	80	9	1860	37	13	11	37	1.81
51451858--51451911	25	2.2	25	83	12	67	53	25	1	18	1.54
51452504--51452785	142	2.0	143	91	0	458	38	23	9	28	1.86
51454914--51454946	6	5.3	6	96	3	57	45	54	0	0	0.99
51454914--51454952	12	3.1	13	88	7	53	46	48	0	5	1.24
51459332--51459433	20	5.1	20	69	9	73	34	18	29	17	1.94
51459329--51459433	40	2.6	40	90	0	165	36	18	28	17	1.93
51461414--51461473	5	11.6	5	74	13	50	16	8	3	71	1.24
51461414--51461475	21	2.7	22	82	14	72	16	8	4	70	1.28
51461446--51461507	29	2.1	29	82	11	74	14	8	3	74	1.18
51464309--51464606	82	3.6	82	89	4	433	26	28	20	24	1.99
51464309--51464606	122	2.4	122	88	4	451	26	28	20	24	1.99
51464309--51464607	40	7.3	41	89	5	419	26	28	20	24	1.99
51470301--51470523	40	5.6	40	87	3	263	24	20	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51470377--51470558	79	2.3	80	83	1	224	25	20	28	25	1.99
51478204--51478426	40	5.6	40	86	3	245	24	20	27	26	1.99
51478279--51478461	79	2.3	80	82	1	226	25	20	27	25	1.99
51480211--51480281	26	2.7	27	80	8	83	26	25	14	33	1.94
51480211--51480290	27	3.0	27	87	3	108	25	23	16	35	1.95
51485492--51485559	29	2.3	29	85	5	93	26	30	13	29	1.94
51485381--51485708	174	1.9	174	94	0	584	30	24	14	30	1.94
51485661--51485739	29	2.7	30	82	13	110	30	30	13	25	1.94
51517182--51517216	18	2.0	17	88	5	52	45	0	0	54	0.99
51517449--51517487	16	2.4	16	86	0	51	28	33	2	35	1.71
51517462--51517518	16	3.6	16	95	0	87	33	36	0	29	1.58
51520694--51520780	29	3.0	29	91	0	138	27	28	13	29	1.94
51525251--51525368	29	4.1	28	85	6	155	31	25	11	31	1.92
51526786--51526817	16	2.0	16	93	0	55	9	6	34	50	1.60
51529690--51529840	43	3.5	43	78	11	157	29	22	16	31	1.96
51537352--51537502	43	3.5	43	81	2	178	32	23	15	27	1.96
51538743--51538796	27	2.0	27	85	0	72	38	7	14	38	1.75
51547019--51547186	47	3.6	47	90	0	255	27	30	8	33	1.86
51547392--51547551	39	4.1	40	78	11	134	23	28	22	25	1.99
51551559--51551777	40	5.5	40	93	0	357	26	28	21	23	1.99
51553241--51553319	37	2.1	37	90	0	122	25	31	18	24	1.98
51553438--51553816	47	8.1	47	92	0	571	28	30	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51557949--51558116	47	3.6	47	90	0	255	27	30	8	33	1.86
51558321--51558481	40	4.1	39	77	13	159	23	27	22	25	2.00
51562061--51562199	69	2.0	69	91	0	224	40	22	8	28	1.83
51567730--51567838	22	4.9	21	68	22	71	19	7	3	69	1.27
51569482--51569706	40	5.7	40	84	5	251	25	27	23	24	2.00
51569484--51569706	119	1.9	120	81	8	276	25	26	23	24	2.00
51577429--51577613	40	4.7	40	82	5	214	25	27	21	25	1.99
51577431--51577613	79	2.3	80	82	5	210	25	27	21	25	2.00
51580420--51580473	6	9.6	5	81	18	54	18	1	5	74	1.11
51580420--51580462	17	2.4	18	85	11	54	16	2	6	74	1.14
51583457--51583614	42	3.7	42	80	7	167	34	25	15	24	1.95
51583458--51583614	43	3.7	42	77	10	140	34	25	15	24	1.95
51594001--51594112	39	2.8	39	86	1	143	25	22	27	24	2.00
51598483--51598575	27	3.5	27	91	4	145	43	18	10	27	1.83
51600884--51600946	28	2.3	28	83	8	76	41	22	19	17	1.90
51600864--51600946	27	3.0	27	77	6	87	42	18	19	20	1.90
51602856--51603009	81	1.9	81	89	0	236	37	7	23	31	1.83
51602856--51602984	27	4.8	27	94	0	213	38	7	23	30	1.83
51602882--51603164	27	10.5	26	78	6	147	34	8	20	36	1.83
51602961--51603137	80	2.2	81	81	1	194	31	10	19	38	1.85
51602981--51603159	54	3.3	54	74	9	177	31	9	18	40	1.83
51603116--51603174	27	2.2	27	84	6	75	35	8	13	42	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51607683--51607769	27	3.2	27	78	3	95	35	17	25	21	1.95
51607804--51607896	29	3.2	29	85	8	143	47	17	13	21	1.82
51611055--51611187	28	4.8	27	75	5	97	38	15	22	24	1.92
51611060--51611187	56	2.3	56	81	4	134	39	14	23	22	1.91
51617616--51617710	42	2.2	42	79	5	111	34	24	15	25	1.95
51617624--51617706	42	2.0	43	85	7	116	34	26	15	22	1.94
51620691--51620831	51	2.8	49	80	4	165	27	27	20	24	1.99
51623286--51623354	30	2.3	30	85	9	97	59	17	14	8	1.60
51623297--51623359	15	4.2	15	75	15	67	58	15	14	11	1.63
51623905--51624091	37	5.2	37	60	14	102	30	16	11	41	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255