genome.fa.s4.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  148  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47904080--47904258	46	3.9	46	80	10	211	20	21	30	28	1.98
47904079--47904251	93	1.9	93	92	0	292	20	21	30	27	1.98
47910690--47910820	49	2.7	49	84	4	158	27	20	28	23	1.99
47910791--47910851	30	2.0	30	100	0	122	19	26	29	24	1.99
47913367--47913567	39	5.1	39	89	3	246	31	30	20	16	1.95
47913640--47913704	28	2.3	28	86	0	94	29	21	10	38	1.87
47913640--47913721	28	2.9	28	81	0	92	29	23	12	35	1.91
47919626--47919736	27	4.1	26	86	7	141	36	24	23	16	1.94
47919626--47919736	54	2.1	54	87	3	161	36	24	23	16	1.94
47927467--47927575	54	2.0	54	83	3	139	37	21	22	18	1.94
47927467--47927575	27	4.0	26	82	8	119	37	21	22	18	1.94
47931899--47931955	5	11.4	5	100	0	114	40	0	19	40	1.51
47935589--47935633	13	3.5	13	77	17	58	42	13	24	20	1.87
47935577--47935667	25	3.7	25	80	1	103	47	10	19	21	1.80
47935888--47935942	20	2.8	20	100	0	110	41	30	14	12	1.83
47935952--47936007	22	2.5	22	75	11	60	35	19	25	19	1.95
47936523--47936689	54	3.1	54	84	0	208	27	20	15	35	1.93
47936522--47936681	27	5.9	27	84	1	178	26	21	16	35	1.95
47938720--47938832	6	18.3	6	67	18	63	48	13	17	20	1.80
47938741--47938832	25	3.7	25	85	0	121	47	13	18	20	1.81
47939055--47939115	22	2.8	22	75	9	61	36	26	22	14	1.93
47939632--47939797	27	6.1	27	86	0	197	25	21	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47941798--47941901	6	16.8	6	71	16	70	46	13	21	19	1.84
47941786--47941892	37	2.9	37	80	4	126	46	12	21	19	1.82
47941834--47941901	25	2.7	25	83	0	91	47	13	19	20	1.82
47942254--47942284	16	1.9	16	93	0	53	35	12	22	29	1.91
47942426--47942567	27	5.3	27	78	6	135	28	21	16	33	1.96
47942425--47942567	54	2.7	53	78	6	153	27	21	16	33	1.95
47944635--47944724	25	3.6	25	84	0	117	46	12	22	18	1.82
47944682--47944724	6	7.0	6	80	15	52	46	13	18	20	1.83
47944951--47945006	22	2.5	22	75	11	60	35	23	23	17	1.95
47945534--47945656	27	4.6	27	78	6	115	30	20	15	34	1.93
47945549--47945656	54	2.0	54	82	7	130	30	20	12	36	1.90
47947667--47947734	19	3.6	19	80	11	77	50	14	17	17	1.79
47947647--47947737	37	2.5	37	88	0	128	52	13	16	17	1.74
47947638--47947737	6	16.3	6	72	15	71	52	14	16	18	1.76
47948004--47948057	22	2.5	22	76	11	65	35	22	24	18	1.96
47949101--47949312	40	5.3	40	88	3	277	23	20	27	27	1.99
47956344--47956655	40	7.8	40	89	2	448	24	20	28	25	1.99
47956344--47956675	120	2.8	120	90	2	499	24	20	28	26	1.99
47958372--47958552	27	7.0	27	79	11	173	25	23	17	33	1.96
47958399--47958440	19	2.2	19	100	0	84	26	23	23	26	2.00
47958420--47958559	27	5.2	27	86	0	199	27	21	14	36	1.92
47958418--47958588	81	2.1	81	78	8	188	28	19	16	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47963084--47963158	25	3.0	25	84	2	96	29	21	16	33	1.95
47963221--47963281	13	4.5	13	73	18	52	37	6	18	37	1.76
47966444--47966663	46	4.8	45	77	11	205	27	19	29	23	1.98
47977996--47978038	20	2.2	20	100	0	86	23	9	16	51	1.73
47977996--47978047	20	2.6	20	90	6	70	23	9	15	51	1.72
47981873--47982044	46	3.7	48	83	9	182	25	19	31	23	1.98
47985359--47985760	195	2.1	195	94	0	705	19	21	32	26	1.97
47987611--47987641	16	1.9	16	93	0	53	48	0	3	48	1.17
47995038--47995164	47	2.7	47	87	4	166	25	19	29	25	1.99
48011801--48012023	40	5.6	40	86	3	236	24	21	27	26	1.99
48019759--48019981	40	5.6	40	83	3	218	25	21	26	26	1.99
48019834--48020016	79	2.3	80	80	1	208	26	20	26	25	1.99
48022637--48022679	19	2.3	19	91	0	68	27	20	32	18	1.96
48024229--48024294	32	2.1	32	88	0	96	66	12	3	18	1.36
48040259--48040394	68	2.0	68	98	0	263	20	11	33	34	1.88
48041467--48041544	29	2.7	29	91	0	120	39	23	20	16	1.92
48067061--48067696	48	13.0	48	91	5	954	30	25	6	36	1.82
48067061--48067696	100	6.5	96	90	5	954	30	25	6	36	1.82
48067061--48067696	148	4.3	147	91	4	1016	30	25	6	36	1.82
48076841--48076868	13	2.2	13	100	0	56	21	32	28	17	1.96
48079018--48079279	39	6.7	40	87	7	328	24	27	22	25	2.00
48079657--48079681	13	1.9	13	100	0	50	0	8	4	88	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48086347--48086608	39	6.6	39	87	6	320	25	27	21	25	1.99
48088302--48088331	15	1.9	16	93	6	53	33	0	0	66	0.92
48088605--48088652	3	16.0	3	95	0	87	33	31	0	35	1.58
48098683--48098721	20	1.9	20	84	5	51	38	17	7	35	1.79
48104062--48104193	46	2.8	48	77	7	135	29	18	29	21	1.97
48104066--48104289	97	2.3	95	81	6	238	30	20	27	20	1.98
48104164--48104289	48	2.6	49	80	9	141	30	23	26	19	1.98
48110768--48110872	43	2.4	43	82	0	120	32	24	17	25	1.97
48121118--48121332	29	7.6	29	73	4	204	16	17	36	29	1.92
48121088--48121387	57	5.2	57	91	1	476	18	17	35	29	1.94
48121088--48121387	113	2.6	114	92	2	476	18	17	35	29	1.94
48125090--48125234	48	3.0	47	83	7	159	24	26	17	31	1.97
48137035--48137064	14	2.1	14	93	0	51	20	6	10	63	1.47
48141521--48141992	47	10.0	47	91	0	687	33	12	28	25	1.92
48141684--48141758	22	3.3	22	66	23	64	32	13	29	25	1.93
48146531--48146704	48	3.6	48	78	4	154	22	29	18	29	1.97
48149370--48149443	35	2.2	33	88	7	105	37	5	9	47	1.59
48151455--48151578	41	3.0	42	71	8	126	25	15	28	31	1.95
48159469--48159565	49	2.0	49	81	4	115	45	8	16	29	1.76
48179341--48179422	27	3.0	27	87	0	119	32	7	17	42	1.76
48183392--48183432	21	2.0	22	85	9	59	29	7	14	48	1.71
48183969--48183997	14	2.0	15	93	6	51	27	0	31	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48186950--48186987	15	2.4	16	86	4	51	31	7	0	60	1.25
48188749--48188932	40	4.6	40	93	4	302	23	22	28	25	1.99
48188745--48188965	119	1.9	119	85	5	313	26	21	26	25	2.00
48188745--48188965	40	5.6	40	87	5	209	26	21	26	25	2.00
48196794--48197000	40	5.2	40	88	4	278	25	21	27	25	2.00
48207414--48207563	75	2.0	75	92	0	246	36	21	10	32	1.87
48219494--48219532	20	2.1	19	85	9	53	51	17	28	2	1.59
48221910--48221948	20	2.0	20	95	5	71	20	43	15	20	1.88
48228282--48228459	27	6.6	27	83	3	196	29	27	15	27	1.96
48228303--48228458	82	1.9	81	86	3	224	29	27	15	27	1.96
48235088--48235172	1	85.0	1	100	0	170	0	0	0	100	0.00
48236025--48236202	27	6.6	27	84	3	205	29	28	15	26	1.96
48236046--48236201	82	1.9	81	88	3	233	29	28	15	26	1.96
48239403--48239429	14	1.9	14	100	0	54	22	7	11	59	1.56
48242748--48242817	34	2.1	34	94	5	124	47	22	15	14	1.82
48244669--48244853	40	4.7	40	83	7	234	24	22	27	25	2.00
48244669--48244851	79	2.3	81	84	7	232	24	22	27	25	2.00
48264665--48264925	77	3.3	79	83	8	320	26	25	22	25	2.00
48264665--48264873	40	5.3	40	89	5	302	26	25	22	24	2.00
48272514--48272567	27	2.0	27	100	0	108	33	37	3	25	1.74
48279123--48279180	28	2.1	28	100	0	116	25	34	13	25	1.93
48279397--48279431	16	2.2	16	89	0	52	11	17	25	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48291754--48291974	40	5.6	40	83	2	250	25	23	26	24	2.00
48294875--48295106	47	4.9	47	91	0	365	33	8	29	28	1.87
48296479--48296744	40	6.7	40	90	1	399	22	22	29	25	1.99
48314790--48314826	20	1.9	20	88	5	58	40	8	2	48	1.47
48322772--48322947	46	3.7	45	76	11	174	22	19	28	29	1.98
48322762--48322940	97	1.8	97	90	2	288	23	19	27	29	1.98
48329320--48329426	27	4.0	27	88	0	151	35	18	18	27	1.95
48329412--48329832	27	15.7	27	78	6	286	40	19	8	31	1.82
48329447--48329829	53	7.1	54	75	9	230	40	20	8	30	1.82
48330547--48330594	22	2.2	22	92	0	78	10	18	25	45	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255