genome.fa.s4.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  158  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51623874--51624096	72	3.1	72	99	0	437	32	15	12	39	1.85
51623942--51624054	35	3.2	35	61	14	86	34	13	12	39	1.82
51626459--51626645	49	3.8	49	78	5	214	29	25	17	27	1.98
51626465--51626645	100	1.8	100	92	2	310	29	25	18	26	1.98
51638140--51638323	49	3.7	49	83	2	233	27	18	23	29	1.98
51638135--51638322	100	1.9	100	93	0	322	27	19	23	29	1.98
51647381--51647528	41	3.6	41	77	12	151	22	21	28	27	1.99
51649574--51649750	40	4.4	40	82	4	216	27	26	21	24	1.99
51649574--51649738	80	2.1	79	88	3	242	27	26	21	24	1.99
51651669--51651853	39	4.7	39	91	0	262	22	20	27	30	1.98
51668159--51668222	31	2.1	31	87	0	92	25	21	14	39	1.91
51668431--51668538	25	4.4	24	86	9	139	28	22	22	26	1.99
51668586--51668652	20	3.3	20	95	4	118	34	19	10	35	1.86
51668572--51668652	40	2.0	39	84	13	103	34	18	11	35	1.86
51668586--51668641	11	5.5	11	75	16	66	33	19	10	35	1.87
51668586--51668658	9	7.4	10	73	17	64	35	19	9	35	1.84
51669158--51669185	8	3.5	8	100	0	56	14	21	21	42	1.88
51671232--51671259	13	2.2	13	100	0	56	67	0	7	25	1.15
51673865--51673906	22	1.9	22	85	0	57	38	0	26	35	1.57
51680716--51680868	44	3.6	42	76	9	139	26	16	24	32	1.96
51680717--51680888	43	4.0	43	74	11	154	26	16	25	31	1.97
51694186--51694448	40	6.6	40	87	3	316	25	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51694225--51694483	80	3.3	80	84	3	229	26	20	27	25	1.99
51702136--51702398	40	6.6	40	87	3	316	24	20	27	27	1.99
51702175--51702433	80	3.3	80	84	3	247	25	20	27	26	1.99
51704254--51704327	34	2.1	34	90	2	112	31	10	31	27	1.91
51704267--51704340	34	2.2	33	80	9	78	37	9	29	22	1.86
51712629--51712672	13	3.3	13	83	3	52	45	2	4	47	1.35
51715008--51715036	8	3.8	8	95	4	51	79	0	0	20	0.74
51716287--51716349	30	2.2	29	83	8	76	53	1	1	42	1.19
51716293--51716352	23	2.6	25	79	12	74	53	1	1	43	1.20
51716734--51716782	23	2.2	23	85	7	66	40	0	6	53	1.26
51717861--51717925	21	3.0	22	71	15	71	15	15	24	44	1.85
51724664--51724723	6	9.7	6	91	7	75	10	18	5	66	1.39
51724677--51724734	18	3.2	18	80	4	55	10	13	8	67	1.42
51733640--51733862	39	5.7	40	84	8	257	25	21	27	25	2.00
51733640--51733862	79	2.8	81	83	9	273	25	21	27	25	2.00
51733692--51733895	79	2.6	79	83	8	213	26	21	27	24	1.99
51741561--51741783	39	5.7	40	85	8	266	25	22	27	24	2.00
51741561--51741783	79	2.8	81	84	9	282	25	22	27	24	2.00
51741561--51741816	79	3.3	79	81	10	217	26	21	27	24	1.99
51745293--51745336	22	1.9	23	86	9	63	47	0	11	40	1.39
51745641--51745688	20	2.3	21	78	3	53	33	6	12	47	1.66
51750418--51750458	19	2.2	19	95	0	73	63	4	7	24	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51752702--51752728	9	3.0	9	100	0	54	33	44	0	22	1.53
51757636--51757699	28	2.3	28	91	5	103	32	29	7	29	1.86
51757805--51757894	27	3.2	28	81	7	112	18	24	24	32	1.97
51757815--51757905	27	3.2	28	81	4	94	20	26	20	31	1.98
51757805--51757919	55	2.1	56	82	8	137	18	24	22	34	1.96
51758358--51758396	19	2.1	19	85	0	51	15	5	7	71	1.26
51770359--51770543	67	2.8	64	86	6	230	28	17	30	23	1.97
51770392--51770521	67	1.9	67	100	0	260	29	18	30	21	1.97
51772329--51772500	9	18.6	9	73	16	129	31	0	20	47	1.55
51772333--51772500	39	4.2	40	75	17	122	31	0	20	47	1.55
51772683--51773406	241	3.0	241	95	0	1319	32	14	18	34	1.91
51773538--51773587	23	2.2	23	96	0	91	32	16	18	34	1.92
51775398--51775427	15	2.0	15	100	0	60	40	6	20	33	1.78
51777551--51777648	27	3.5	28	87	2	126	27	13	27	31	1.94
51777581--51777662	27	2.9	27	85	5	83	30	12	23	34	1.91
51782582--51782773	56	3.5	55	84	6	248	34	23	12	28	1.92
51787797--51787839	18	2.4	18	77	14	52	46	6	9	37	1.63
51788299--51788447	80	1.9	79	94	1	262	26	12	28	32	1.92
51788299--51788447	27	5.6	27	92	4	239	26	12	28	32	1.92
51800785--51801127	40	8.6	40	91	2	467	26	27	20	24	1.99
51804404--51804588	40	4.7	40	82	6	216	25	27	22	24	2.00
51804404--51804588	79	2.3	81	80	8	209	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51807934--51808087	43	3.6	42	80	7	141	29	24	20	26	1.99
51815430--51815480	22	2.3	22	86	0	75	23	39	23	13	1.91
51820245--51820292	20	2.3	21	85	3	62	18	50	18	12	1.78
51821219--51821251	13	2.6	13	90	4	50	39	0	12	48	1.40
51826155--51826270	41	2.8	41	80	8	128	29	13	26	30	1.94
51828935--51829051	57	2.1	57	100	0	234	40	17	11	30	1.85
51831756--51831867	43	2.7	41	81	5	116	24	17	25	33	1.97
51840506--51840631	40	3.2	40	87	5	177	26	27	21	23	1.99
51841975--51842197	40	5.6	40	85	3	236	26	27	21	24	1.99
51842129--51842206	40	1.9	41	82	10	97	26	28	21	23	1.99
51862297--51862517	40	5.6	40	85	3	241	24	20	28	26	1.99
51862370--51862552	79	2.3	80	82	1	226	25	20	27	25	1.99
51864313--51864427	55	2.1	56	80	8	128	34	21	24	19	1.96
51864338--51864427	27	3.2	27	79	7	92	32	23	24	20	1.98
51864533--51864597	28	2.3	28	94	0	112	32	7	26	33	1.85
51865894--51865965	36	2.0	36	100	0	144	25	38	5	30	1.78
51866962--51867181	39	5.6	39	81	5	180	25	27	22	25	2.00
51868992--51869106	43	2.7	43	72	6	117	26	17	23	32	1.97
51874561--51874590	15	2.1	15	93	6	53	13	6	10	70	1.34
51875406--51875430	13	1.9	13	100	0	50	24	4	24	48	1.68
51875419--51875544	43	2.9	43	91	0	198	23	15	28	32	1.95
51876896--51877118	79	2.8	78	82	9	265	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51876896--51877118	39	5.7	40	86	8	266	24	27	22	25	2.00
51878724--51878901	43	4.2	43	74	11	168	24	16	26	32	1.96
51880543--51880687	38	3.6	38	76	17	164	28	15	26	28	1.96
51880569--51880784	48	4.7	48	78	11	220	29	16	24	30	1.96
51880543--51880741	86	2.3	86	96	0	362	29	15	25	29	1.96
51883684--51883720	15	2.5	14	87	12	56	10	13	16	59	1.61
51886360--51886441	38	2.2	38	88	0	119	32	14	24	28	1.94
51893662--51894060	55	7.5	54	76	10	342	35	16	24	23	1.95
51893602--51894068	109	4.5	102	76	10	455	35	15	24	23	1.94
51893602--51894048	209	2.1	209	95	0	797	35	15	24	24	1.94
51893872--51894082	108	2.0	109	81	1	255	37	16	23	21	1.93
51905968--51906105	53	2.6	54	79	16	162	30	20	20	28	1.97
51905933--51906127	27	7.3	27	75	4	153	29	22	20	28	1.98
51908042--51908113	35	2.0	36	91	2	119	11	5	34	48	1.62
51909704--51909756	27	2.0	27	92	0	88	20	22	20	35	1.96
51909712--51909773	27	2.3	27	82	0	70	19	24	19	37	1.94
51917391--51917447	24	2.4	24	93	0	105	49	7	21	22	1.73
51917613--51917664	11	4.5	11	76	9	59	34	1	0	63	1.06
51919790--51920063	46	6.0	46	90	2	372	40	13	23	21	1.89
51923157--51923208	11	4.5	11	76	9	59	34	1	0	63	1.06
51925280--51925599	46	7.0	46	90	0	426	39	14	24	22	1.91
51925687--51925743	13	4.3	13	70	2	51	36	3	24	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51927844--51928039	89	2.2	90	91	0	313	40	18	8	32	1.80
51927844--51928047	90	2.3	88	88	4	300	40	17	8	33	1.80
51951127--51951180	27	2.0	27	85	0	72	38	7	14	38	1.75
51952163--51952217	29	1.9	28	82	10	67	49	1	14	34	1.54
51953325--51953367	22	1.9	23	90	4	70	18	53	6	20	1.67
51960041--51960169	46	2.8	46	93	0	213	30	27	20	20	1.98
51960046--51960188	46	3.1	45	87	4	155	29	27	20	22	1.99
51963714--51963780	34	2.0	34	93	0	116	28	23	22	25	1.99
51965015--51965053	19	2.1	19	100	0	78	48	10	10	30	1.70
51970005--51970117	29	3.9	29	82	11	126	28	30	15	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255