genome.fa.s4.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  152  of  255  ( 30512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49318661--49318933	47	5.7	47	75	12	220	24	29	18	26	1.98
49321853--49322058	27	7.6	27	90	2	270	24	21	17	35	1.95
49328411--49328684	48	5.7	49	78	8	255	24	29	18	27	1.98
49336839--49336924	44	2.0	43	83	2	109	37	16	19	26	1.93
49337723--49337754	14	2.1	16	88	11	50	75	0	6	18	1.01
49345198--49345375	27	6.6	27	84	3	205	29	28	15	26	1.96
49345219--49345374	82	1.9	81	88	3	233	29	28	15	26	1.96
49353354--49353531	27	6.6	27	84	3	205	29	28	15	26	1.96
49353375--49353530	82	1.9	81	88	3	233	29	28	15	26	1.96
49355391--49355530	43	3.3	43	84	5	153	22	26	20	30	1.98
49355425--49355537	43	2.7	43	90	1	165	22	27	22	28	1.99
49357829--49357906	20	3.8	20	73	9	59	50	20	15	14	1.78
49360844--49360913	23	3.0	23	87	0	95	32	4	24	38	1.75
49365896--49366149	46	5.5	46	77	11	204	27	17	31	24	1.97
49375814--49375871	30	1.9	30	89	0	89	32	12	25	29	1.92
49377745--49377917	93	1.9	93	91	0	283	28	30	20	21	1.98
49377738--49377913	46	3.8	46	78	10	178	29	29	19	21	1.98
49377789--49377932	46	3.1	46	72	14	134	29	29	19	21	1.98
49380074--49380224	44	3.5	43	76	11	148	27	24	19	28	1.98
49387290--49387451	43	3.8	42	78	11	157	29	25	17	27	1.98
49387290--49387448	44	3.7	43	77	12	157	29	25	17	27	1.98
49388745--49388875	46	2.8	46	79	10	124	28	22	29	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49390808--49391011	75	2.7	76	84	4	261	43	8	3	43	1.54
49391854--49391923	32	2.3	32	78	9	85	7	20	5	67	1.36
49393729--49393803	37	2.0	37	87	5	107	26	30	18	24	1.98
49393923--49394461	47	11.4	47	94	0	880	28	29	8	32	1.88
49393923--49394635	141	5.1	141	86	7	996	29	29	8	32	1.88
49394427--49394494	33	2.1	33	100	0	136	26	27	11	33	1.91
49394332--49394588	128	2.0	127	95	0	460	28	29	9	31	1.88
49394379--49394541	80	2.0	81	95	1	292	28	30	9	31	1.89
49394460--49394635	47	3.7	47	96	0	325	28	30	9	31	1.88
49399673--49399896	39	5.7	40	82	8	248	26	22	26	24	2.00
49399677--49399896	79	2.8	79	81	10	234	26	22	26	24	2.00
49399673--49399896	40	5.6	39	83	6	233	26	22	26	24	2.00
49403739--49403779	19	2.2	19	100	0	82	29	9	36	24	1.87
49407206--49407428	39	5.7	40	82	8	230	26	22	26	24	2.00
49415144--49418651	709	5.0	710	94	3	6098	24	24	18	32	1.97
49418643--49418976	43	7.9	42	72	7	262	24	32	24	18	1.97
49418635--49418954	128	2.5	126	82	4	399	25	31	25	18	1.97
49430966--49431115	27	5.5	27	84	4	122	26	30	16	27	1.96
49430992--49431115	55	2.3	54	87	4	169	25	29	16	28	1.96
49434606--49434777	84	2.0	84	100	0	344	45	9	10	34	1.71
49435167--49435221	23	2.4	22	76	8	56	45	0	18	36	1.49
49435264--49435349	30	2.9	31	79	6	97	38	9	24	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49436549--49436591	21	2.0	21	100	0	86	30	9	27	32	1.88
49438070--49438257	48	4.0	47	90	5	272	24	18	29	27	1.98
49438078--49438296	48	4.6	47	85	5	203	25	17	29	27	1.97
49438070--49438296	95	2.4	95	84	6	264	24	17	29	28	1.97
49461428--49461650	40	5.6	39	81	8	200	25	21	27	26	1.99
49468438--49468607	79	2.1	79	83	3	207	25	22	27	25	2.00
49468438--49468607	40	4.3	39	86	5	198	25	22	27	25	2.00
49468467--49468642	79	2.2	79	79	5	176	25	22	27	24	2.00
49472985--49473448	232	2.0	232	97	0	883	32	21	10	35	1.87
49476499--49476603	38	2.9	36	80	12	117	30	7	0	60	1.30
49476499--49476614	35	3.1	35	74	14	92	30	7	1	60	1.35
49476710--49476776	30	2.2	31	81	5	82	29	4	0	65	1.12
49477071--49477104	12	2.8	12	86	13	52	47	0	0	52	1.00
49488468--49489151	206	3.3	206	89	1	994	31	17	22	27	1.97
49490962--49491028	13	5.3	13	70	10	50	32	1	1	64	1.12
49490901--49490986	35	2.5	34	77	11	95	31	5	2	60	1.33
49491098--49491164	30	2.2	31	81	5	82	31	2	0	65	1.07
49491117--49491207	39	2.3	41	79	12	100	28	3	2	65	1.20
49491460--49491493	12	2.8	12	86	13	52	47	0	0	52	1.00
49498737--49498779	17	2.5	17	96	0	77	4	32	41	20	1.73
49499338--49499402	34	1.9	34	87	3	96	29	24	23	23	1.99
49515309--49515399	38	2.4	38	94	0	155	16	17	28	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49524599--49524740	42	3.4	42	88	0	221	21	16	26	35	1.94
49524856--49524883	14	2.0	14	100	0	56	50	21	7	21	1.72
49527058--49527152	42	2.2	43	83	1	120	32	20	22	25	1.97
49528937--49529199	40	6.6	40	88	3	325	26	27	20	24	1.99
49533172--49533389	40	5.5	41	86	5	254	24	22	27	26	2.00
49541201--49541432	40	5.8	40	90	3	328	22	22	28	26	1.99
49542910--49542948	19	2.0	20	85	14	55	15	10	23	51	1.73
49543508--49543615	27	4.0	27	90	0	153	39	7	23	29	1.82
49543661--49543785	27	4.7	27	76	13	109	29	10	23	36	1.88
49543634--49543764	54	2.5	53	80	8	140	29	9	23	36	1.87
49546137--49546177	6	6.8	6	83	10	57	48	14	17	19	1.81
49546151--49546230	31	2.6	30	82	9	90	48	12	18	20	1.80
49546376--49546517	67	2.1	67	85	7	187	32	22	26	18	1.97
49546735--49546982	27	9.2	27	83	4	286	41	6	20	30	1.78
49546975--49547126	53	2.9	53	77	5	157	28	9	23	38	1.87
49547003--49547126	26	4.7	27	77	11	114	29	8	23	37	1.85
49585056--49585224	49	3.4	49	80	3	212	28	26	18	27	1.98
49590097--49590139	21	2.0	21	100	0	86	32	13	9	44	1.76
49602604--49602694	40	2.3	40	88	0	128	23	16	26	34	1.95
49602644--49602789	68	2.1	68	89	0	220	23	15	26	33	1.95
49602770--49602823	28	1.9	28	84	0	72	27	9	33	29	1.88
49605509--49605682	48	3.6	48	79	6	181	26	21	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49605509--49605682	96	1.8	96	83	0	231	26	21	29	22	1.99
49609105--49609177	28	2.6	28	86	0	92	26	12	34	27	1.92
49609132--49609190	28	2.1	28	83	0	73	25	11	35	27	1.91
49612722--49612897	27	6.6	27	81	3	167	28	29	15	26	1.96
49612743--49612896	80	1.9	81	86	4	222	27	29	15	26	1.96
49620697--49620874	27	6.6	27	79	3	151	27	29	15	27	1.96
49620723--49620873	82	1.9	81	85	4	214	27	29	16	27	1.97
49622688--49622950	40	6.6	40	88	3	325	24	19	27	27	1.99
49622727--49622985	80	3.3	80	84	3	238	25	19	27	26	1.99
49630663--49630886	40	5.6	40	93	1	326	25	20	27	26	1.99
49630625--49630886	120	2.2	119	84	3	330	25	20	27	26	1.99
49630654--49630921	80	3.4	80	85	3	265	26	19	27	26	1.99
49649322--49649499	27	6.6	27	82	3	178	28	29	15	26	1.96
49649343--49649498	82	1.9	81	85	3	215	28	29	15	26	1.96
49658968--49659134	43	3.9	43	91	0	264	14	23	32	29	1.94
49659453--49659558	45	2.4	45	84	9	130	22	22	27	27	1.99
49676573--49676676	52	2.0	52	94	0	181	29	11	25	32	1.91
49683521--49683550	14	2.1	14	93	0	51	33	0	46	20	1.51
49698992--49699047	29	2.0	28	85	3	76	33	21	3	41	1.70
49707370--49707448	37	2.1	37	90	0	122	25	31	18	24	1.98
49707567--49708031	47	9.8	47	92	1	759	29	29	8	32	1.87
49707567--49708031	96	4.9	94	92	2	759	29	29	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49707567--49708031	143	3.3	143	95	0	790	29	29	8	32	1.87
49709890--49710009	56	2.1	56	98	0	231	22	23	9	45	1.81
49711309--49711571	47	5.7	47	81	10	258	28	17	29	25	1.97
49713446--49713753	40	7.5	41	84	5	383	24	22	26	26	2.00
49713446--49713753	123	2.5	122	85	6	410	24	22	26	26	2.00
49713446--49713753	163	1.9	163	94	0	544	24	22	26	26	2.00
49722016--49722179	46	3.5	45	81	12	172	22	31	18	28	1.97
49722063--49722208	46	3.1	45	79	13	138	21	30	19	28	1.98
49722015--49722208	93	2.1	94	79	11	211	22	31	18	27	1.97
49736797--49736842	6	7.7	6	88	7	67	69	0	2	28	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255