Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Length:  82679320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   

This is table  21  of  255  ( 30512 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5648324--5648362
6
6.8
6
94
5
64
53
0
28
17
1.44
5648323--5648421
11
9.1
10
77
12
81
57
0
21
21
1.41
5648323--5648415
16
5.6
16
78
12
75
56
0
21
21
1.42
5648353--5648409
16
3.6
16
87
0
87
59
0
17
22
1.37
5648385--5648425
16
2.6
15
85
11
55
70
0
12
17
1.16
5648325--5648420
6
17.3
6
78
12
55
59
0
20
19
1.38
5648890--5648992
14
7.2
14
73
23
90
68
0
9
21
1.17
5648873--5649012
53
2.5
56
89
6
205
65
0
10
22
1.28
5648873--5648959
25
3.4
25
75
20
97
64
1
11
22
1.33
5648890--5648973
25
3.2
26
75
20
86
69
0
9
21
1.17
5648957--5649010
24
2.4
23
82
11
60
70
0
9
20
1.14
5648901--5648992
33
2.6
32
80
19
96
67
0
10
21
1.21
5651494--5651616
25
5.0
26
80
15
102
24
11
0
64
1.26
5651479--5651539
16
3.9
16
78
8
63
24
11
0
63
1.27
5651540--5651660
14
9.2
14
70
23
93
19
10
1
68
1.27
5651515--5651619
25
4.9
22
75
18
105
21
12
0
65
1.25
5651524--5651678
64
2.4
66
90
6
237
20
10
1
67
1.29
5651604--5651660
26
2.1
26
83
6
69
15
10
3
70
1.29
5651626--5651658
12
2.8
12
90
4
50
12
9
6
72
1.26
5651788--5651872
26
3.8
22
74
20
77
47
11
2
38
1.53
5651775--5651876
46
2.2
47
84
10
129
48
9
2
39
1.52
5651869--5651952
44
2.0
41
84
11
107
32
4
1
61
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5652386--5652590
105
1.9
106
83
2
261
31
20
18
29
1.96
5652407--5652590
54
3.5
54
70
5
160
31
20
18
29
1.96
5655933--5656072
59
2.4
58
83
8
167
43
10
7
37
1.69
5657461--5657535
23
3.2
23
67
24
57
32
12
1
54
1.45
5657531--5657571
18
2.3
19
80
20
52
31
12
0
56
1.36
5657610--5657638
14
2.1
14
100
0
58
44
0
0
55
0.99
5657583--5657640
28
2.1
28
80
3
64
39
1
0
58
1.08
5659511--5659575
26
2.5
26
80
7
69
29
3
3
64
1.23
5672683--5672717
14
2.5
14
90
0
52
22
11
2
62
1.41
5672624--5673275
89
7.5
87
83
6
734
29
16
18
35
1.93
5673119--5673152
14
2.5
13
86
13
50
26
17
0
55
1.42
5673220--5673331
55
2.0
56
89
3
174
28
16
16
38
1.90
5677448--5677593
44
3.3
44
92
0
220
49
10
2
37
1.50
5677642--5677869
22
9.6
24
66
20
106
63
1
11
23
1.36
5677682--5677753
19
3.4
19
72
23
63
69
1
6
22
1.20
5677642--5677867
45
4.8
47
80
8
280
62
1
11
23
1.36
5677631--5677867
95
2.5
94
87
6
338
63
1
12
22
1.37
5677769--5677862
21
4.3
21
71
21
68
59
2
13
24
1.46
5677857--5677913
5
10.6
5
83
7
60
64
1
15
17
1.37
5677857--5677913
22
2.6
22
88
0
87
64
1
15
17
1.37
5677857--5677913
11
5.3
11
82
15
66
64
1
15
17
1.37
5677873--5677925
22
2.4
22
84
6
63
71
1
11
15
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5679334--5679441
49
2.2
48
80
6
119
38
13
18
28
1.89
5679805--5679860
23
2.4
24
82
8
71
26
8
0
64
1.23
5680798--5680853
22
2.4
25
82
17
82
60
3
7
28
1.40
5680803--5680851
22
2.2
22
100
0
98
61
4
8
26
1.42
5681301--5681452
25
6.1
24
75
17
107
53
5
7
33
1.53
5681573--5681612
17
2.4
17
87
8
55
55
2
2
40
1.27
5681570--5681607
19
2.0
19
89
0
58
57
0
2
39
1.12
5681714--5681780
21
3.2
20
85
8
73
61
1
5
31
1.29
5684241--5684446
108
1.9
109
84
5
281
28
17
20
33
1.95
5684530--5684675
44
3.3
44
91
0
229
50
12
2
35
1.52
5684713--5684992
46
6.0
45
84
9
291
62
0
12
24
1.32
5684853--5684894
19
2.2
19
91
0
66
57
0
16
26
1.40
5684902--5684961
25
2.3
25
80
11
68
65
0
10
25
1.24
5684730--5684992
22
11.2
25
64
22
99
62
0
12
25
1.33
5684982--5685029
6
8.7
6
88
6
50
70
2
8
18
1.22
5684982--5685044
22
2.9
22
83
4
65
73
1
7
17
1.16
5684949--5685044
5
17.8
5
73
15
50
71
1
7
19
1.15
5685283--5685328
18
2.4
18
89
7
65
65
2
13
19
1.37
5686439--5686546
48
2.2
48
81
4
128
40
12
18
28
1.86
5686805--5686854
6
8.7
6
86
4
68
18
16
0
66
1.26
5686837--5686876
21
1.9
21
84
0
53
27
15
2
55
1.53
5686801--5686977
93
1.9
93
81
6
216
23
11
1
63
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5686973--5687043
23
3.0
23
70
10
63
38
12
0
49
1.41
5687156--5687211
27
2.1
27
89
0
85
26
8
0
64
1.23
5687125--5687264
75
1.9
71
83
11
176
24
12
0
62
1.35
5687179--5687329
48
3.2
46
83
11
191
26
10
1
60
1.40
5687226--5687301
23
3.2
23
76
10
82
25
7
1
65
1.27
5687223--5687357
72
1.9
73
83
7
177
25
9
2
61
1.41
5687287--5687324
20
2.0
20
84
5
51
23
13
5
57
1.56
5687226--5687357
49
2.8
48
80
7
126
25
9
3
62
1.40
5689310--5689372
26
2.5
24
82
9
81
36
4
0
58
1.19
5689545--5689577
14
2.4
14
90
10
50
30
0
3
66
1.06
5698637--5698760
49
2.5
49
81
5
153
35
14
23
26
1.93
5699000--5699058
24
2.5
23
81
13
75
22
11
0
66
1.24
5699093--5699169
24
3.2
24
81
5
77
23
9
1
66
1.28
5699099--5699158
30
2.0
29
87
3
84
21
10
0
68
1.19
5699114--5699167
23
2.3
24
90
3
83
25
9
0
64
1.23
5700651--5700692
7
6.0
7
79
20
52
66
0
4
28
1.12
5700538--5700679
3
47.0
3
70
14
87
60
3
4
30
1.35
5700893--5701121
3
76.0
3
67
13
71
60
4
6
27
1.42
5702152--5702185
16
2.1
16
94
0
59
2
0
11
85
0.71
5702530--5702606
21
3.4
21
68
23
57
27
10
0
62
1.28
5702515--5702656
26
6.0
22
72
22
94
27
9
0
61
1.32
5702518--5702681
47
3.5
47
85
7
190
27
9
1
61
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5702593--5702705
22
4.7
24
76
17
119
26
8
2
61
1.38
5702523--5702703
94
1.9
91
81
8
213
27
9
1
61
1.36
5704410--5704451
22
1.9
22
95
0
75
35
23
23
16
1.95
5704540--5704622
43
1.9
44
82
2
105
28
19
0
51
1.47
5704701--5704750
21
2.5
18
81
18
55
44
0
0
56
0.99
5708604--5708650
20
2.3
20
82
7
60
0
25
2
72
0.96
5708618--5708701
17
4.6
18
72
21
68
0
34
1
64
1.02
5708670--5708753
27
3.0
27
80
15
73
0
42
0
57
0.99
5710278--5710332
28
2.0
28
92
0
92
1
29
5
63
1.27
5710306--5710379
39
1.9
39
83
2
96
6
25
8
59
1.51
5713544--5713578
15
2.2
16
90
5
54
48
0
0
51
1.00
5713681--5713715
18
2.0
17
88
5
52
45
0
0
54
0.99
5713951--5714018
16
4.2
16
96
0
127
38
35
0
26
1.57
5722104--5722144
20
2.0
20
85
0
55
51
0
7
41
1.30
5726138--5726187
20
2.4
21
80
12
59
40
20
12
28
1.87
5730969--5730997
14
2.1
14
100
0
58
20
0
6
72
1.07
5732928--5732975
20
2.5
20
86
3
62
64
2
6
27
1.28
5739925--5739985
24
2.6
24
79
7
72
39
4
0
55
1.21
5749957--5749987
15
2.1
15
93
0
53
41
9
19
29
1.83
5750264--5750309
20
2.4
19
83
16
60
41
2
4
52
1.33
5755213--5755360
74
2.0
74
95
0
269
40
20
8
29
1.83
5764845--5764887
21
2.0
21
86
0
59
34
13
25
25
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5764959--5765072
23
5.0
23
74
0
102
17
14
21
45
1.85
5764959--5765072
46
2.5
46
82
0
129
17
14
21
45
1.85
5768392--5768435
19
2.3
19
84
4
52
22
4
0
72
1.02
5775760--5775789
15
2.0
15
93
0
51
50
0
10
40
1.36
5779906--5780100
53
3.7
53
79
6
207
32
16
26
24
1.96
5787573--5787740
54
3.2
51
83
5
185
35
16
24
24
1.95
5787585--5787740
53
2.9
52
80
13
167
34
16
24
24
1.95
5787796--5787822
13
2.1
13
100
0
54
29
14
33
22
1.94
5793224--5793264
20
2.0
20
90
0
64
14
29
36
19
1.92
5795034--5795065
16
2.0
16
93
0
55
0
28
0
71
0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255