genome.fa.s14.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  107  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29706846--29706883	20	1.9	20	88	0	58	2	7	5	84	0.86
29719998--29720036	20	1.9	21	89	5	62	43	0	12	43	1.42
29721771--29721809	21	1.9	20	89	5	60	41	0	0	58	0.98
29721769--29721816	21	2.3	21	75	7	53	45	0	0	54	0.99
29721812--29721857	17	2.8	17	75	15	51	34	0	0	65	0.93
29721780--29721864	29	2.8	31	77	21	92	37	0	1	61	1.04
29721915--29722018	51	2.0	51	81	7	122	40	1	15	42	1.58
29742942--29743007	28	2.4	28	80	5	82	63	0	1	34	1.04
29744706--29744754	24	2.0	24	96	0	89	24	12	10	53	1.69
29744710--29744762	24	2.2	24	89	0	79	28	15	7	49	1.71
29749532--29749641	53	2.1	53	100	0	220	41	13	7	37	1.72
29751400--29751427	11	2.5	11	100	0	56	50	25	7	17	1.72
29757131--29757173	16	2.6	17	78	17	54	41	2	0	55	1.12
29757133--29757177	22	2.0	22	87	8	65	40	2	0	57	1.11
29762216--29762396	31	5.8	31	80	2	130	22	22	12	42	1.87
29765929--29765965	2	18.5	2	100	0	74	51	0	48	0	1.00
29769973--29770229	129	2.0	129	86	3	356	27	29	14	28	1.95
29783879--29783993	37	3.1	37	88	1	160	25	32	19	23	1.97
29784112--29784336	47	4.7	47	89	3	317	28	30	8	32	1.87
29784112--29784336	96	2.4	94	88	3	317	28	30	8	32	1.87
29788772--29788829	23	2.6	21	86	8	71	15	6	39	37	1.74
29789378--29790210	145	5.8	145	91	3	1255	33	18	16	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29789378--29790210	72	11.6	72	90	4	1224	33	18	16	31	1.93
29802109--29802141	15	2.2	15	89	10	50	39	0	0	60	0.97
29802056--29802249	86	2.3	85	82	9	218	46	3	2	47	1.33
29815016--29815079	3	21.7	3	81	12	55	62	1	6	29	1.29
29816297--29816354	23	2.6	23	89	8	84	13	6	39	39	1.72
29818338--29818490	37	4.1	37	92	0	243	27	32	17	22	1.96
29818609--29818906	47	6.3	47	93	1	488	28	30	9	32	1.88
29822757--29822874	57	2.1	58	85	1	157	27	17	6	47	1.73
29824979--29825009	9	3.4	9	90	0	53	25	12	22	38	1.90
29825062--29825098	9	4.1	9	92	0	65	45	13	10	29	1.77
29827408--29827518	42	2.6	42	84	0	123	24	19	17	38	1.92
29827427--29827536	42	2.6	42	82	2	123	22	19	20	37	1.94
29836642--29836679	19	2.0	19	94	0	67	39	10	13	36	1.79
29843815--29844000	25	7.6	25	73	13	111	19	22	20	38	1.94
29843941--29843995	24	2.3	24	90	0	83	16	27	21	34	1.95
29843787--29844004	25	8.9	24	72	8	102	18	22	21	36	1.95
29844010--29844077	25	2.7	25	81	6	75	22	20	20	36	1.95
29852649--29852787	70	2.0	70	94	0	242	30	13	12	42	1.82
29857269--29857321	3	17.7	3	100	0	106	67	0	32	0	0.91
29859912--29859944	2	16.5	2	93	0	57	54	45	0	0	0.99
29866425--29866515	25	3.7	24	82	2	74	34	18	21	25	1.96
29866437--29866483	25	1.9	25	91	4	78	40	14	19	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29866450--29866534	25	3.4	25	85	4	102	32	15	24	27	1.95
29866660--29866710	20	2.4	22	81	15	63	50	13	1	33	1.53
29866669--29866710	22	2.0	20	86	13	59	52	9	2	35	1.47
29868939--29869392	27	16.9	27	84	5	462	40	21	16	21	1.90
29868939--29869392	81	5.6	81	81	6	510	40	21	16	21	1.90
29868939--29869392	54	8.5	54	83	5	528	40	21	16	21	1.90
29869757--29869845	28	3.2	28	95	1	153	21	21	24	32	1.98
29869782--29869873	28	2.9	33	82	7	86	21	21	26	30	1.99
29874552--29874601	24	2.1	24	100	0	100	38	24	0	38	1.56
29876353--29876396	23	1.9	23	85	0	61	31	2	27	38	1.69
29884971--29885086	45	2.6	45	80	5	128	21	13	27	37	1.91
29887440--29887481	21	2.0	21	86	9	59	50	7	0	42	1.30
29888516--29888736	50	4.6	47	81	6	239	26	20	31	21	1.98
29888520--29888702	97	1.9	99	88	3	280	26	20	32	20	1.97
29894230--29894267	19	2.0	19	100	0	76	52	15	5	26	1.64
29900202--29900282	37	2.2	37	90	0	126	24	35	16	23	1.94
29900464--29900516	26	2.0	27	92	3	90	30	24	20	24	1.99
29902537--29902585	24	2.1	23	84	3	62	53	10	2	34	1.47
29907173--29907221	22	2.2	22	96	0	89	28	8	18	44	1.78
29918801--29918833	17	1.9	17	93	0	57	21	12	9	57	1.62
29931404--29931460	27	2.3	25	82	14	73	12	7	5	75	1.17
29933747--29933866	42	2.8	43	74	3	109	33	25	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29935627--29935665	15	2.4	17	83	8	55	71	0	15	12	1.14
29938998--29939040	7	6.0	7	81	5	50	48	39	0	11	1.40
29949626--29949680	24	2.5	23	85	11	71	60	0	3	36	1.15
29955803--29955992	50	3.8	50	82	0	227	22	28	22	25	1.99
29959162--29959393	40	5.8	40	92	2	324	21	21	30	26	1.98
29959163--29959421	80	3.2	80	84	4	319	22	21	29	26	1.99
29967556--29967786	40	5.8	40	91	3	315	21	21	30	26	1.98
29967556--29967786	79	2.9	80	88	3	315	21	21	30	26	1.98
29967556--29967786	119	1.9	119	85	4	304	21	21	30	26	1.98
29967556--29967814	119	2.2	119	80	8	294	22	20	30	26	1.98
29972175--29972216	21	2.0	21	86	9	59	28	21	11	38	1.89
29975243--29975435	50	3.8	50	83	0	251	22	31	21	24	1.98
29975773--29975841	30	2.4	28	78	7	84	34	17	10	37	1.83
29977051--29977100	26	1.9	26	91	0	82	34	22	22	22	1.97
29977293--29977454	26	6.2	26	82	0	171	24	18	20	36	1.95
29987238--29987287	26	1.9	26	88	8	75	34	20	0	46	1.51
29991121--29991313	27	7.2	27	86	4	250	17	17	22	42	1.89
29991122--29991313	53	3.6	53	86	4	262	17	17	22	42	1.89
29991123--29991313	80	2.4	81	91	1	314	17	17	21	42	1.89
29997592--29997626	15	2.4	15	90	4	54	48	0	8	42	1.33
29999187--29999280	47	2.0	48	89	6	147	24	19	13	42	1.87
30000550--30000584	17	2.1	16	94	5	61	80	5	0	14	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30001701--30001754	28	2.0	28	89	7	85	64	0	25	9	1.23
30003672--30003705	17	2.1	17	88	5	52	44	11	11	32	1.77
30007729--30007785	5	10.4	5	83	12	60	21	1	0	77	0.86
30007729--30007785	22	2.5	22	94	2	96	21	1	0	77	0.86
30007736--30007792	17	3.3	18	83	13	68	22	1	0	75	0.90
30007856--30007894	17	2.3	17	100	0	78	56	10	28	5	1.54
30009193--30009436	50	4.9	50	82	5	244	28	20	28	22	1.99
30009148--30009387	100	2.3	103	82	5	272	28	20	28	23	1.99
30013629--30013827	56	3.7	56	84	6	250	25	20	29	24	1.99
30013629--30013862	56	4.4	53	84	5	246	26	21	28	24	1.99
30014034--30014182	56	2.7	55	88	6	219	25	18	28	28	1.98
30014034--30014331	50	5.7	51	78	7	237	27	20	27	24	1.99
30013461--30014267	405	2.0	405	99	0	1578	30	16	23	29	1.96
30015633--30015675	22	2.0	22	86	4	61	27	39	6	25	1.81
30017405--30017439	15	2.4	15	90	4	54	48	0	8	42	1.33
30027147--30027198	23	2.3	22	75	21	54	9	23	1	65	1.32
30027156--30027211	12	4.7	12	74	14	53	12	23	0	64	1.27
30044992--30045058	22	3.0	22	76	8	73	40	17	25	16	1.90
30052280--30052477	27	7.4	27	78	0	173	42	19	20	17	1.89
30052278--30052482	81	2.5	79	81	2	212	42	19	20	17	1.89
30053680--30053758	27	2.9	27	92	3	124	40	20	17	21	1.91
30057393--30057422	3	10.0	3	100	0	60	66	33	0	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30057421--30057453	3	11.0	3	100	0	66	66	0	0	33	0.92
30061671--30061846	27	6.6	27	75	3	122	40	18	17	23	1.91
30061692--30061841	53	2.8	54	80	1	167	39	19	19	22	1.93
30061693--30061862	81	2.1	82	85	5	231	38	18	20	22	1.94
30061671--30061867	27	7.4	26	73	10	121	39	18	18	23	1.93
30063266--30063552	27	10.6	27	78	4	283	43	21	16	17	1.87
30067042--30067075	2	17.5	2	93	6	61	50	0	0	50	1.00
30067765--30068070	150	2.1	147	88	3	445	41	4	10	43	1.58
30068959--30069047	27	3.3	27	96	0	160	35	11	10	42	1.74
30070885--30070922	17	2.2	17	90	0	58	31	7	15	44	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211