genome.fa.s14.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  172  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50964417--50964533	45	2.6	45	80	2	119	23	17	11	47	1.80
50966169--50966237	27	2.6	28	88	4	90	27	34	14	23	1.94
50968408--50968457	21	2.3	21	80	12	57	38	6	2	54	1.37
50971551--50971638	30	2.8	30	81	10	79	42	4	4	48	1.44
50973745--50973802	22	2.6	22	84	7	73	43	17	3	36	1.66
50973774--50973864	17	5.0	17	76	15	67	37	17	8	36	1.81
50973772--50973839	21	3.4	22	84	15	94	36	17	7	38	1.78
50974320--50975274	44	21.8	44	63	13	270	24	23	20	31	1.98
50974264--50975283	132	7.7	132	93	0	1679	24	23	19	31	1.98
50975297--50975496	44	4.5	44	81	6	235	32	24	16	27	1.96
50980986--50981043	22	2.6	22	84	7	73	43	17	3	36	1.66
50980999--50981096	19	4.8	19	83	9	115	39	16	7	36	1.76
50981033--50981095	21	3.1	21	88	9	103	39	14	7	38	1.75
50985368--50985458	38	2.4	38	88	0	128	34	24	23	18	1.96
50987265--50987327	30	2.1	30	90	0	99	22	3	15	58	1.51
50987449--50987479	11	2.8	11	90	0	53	67	0	0	32	0.91
50990816--50991085	92	2.9	92	84	2	315	37	17	17	27	1.92
50990839--50991244	95	4.3	93	74	8	270	39	17	15	28	1.90
50991042--50991254	94	2.3	95	80	3	232	39	18	12	29	1.87
50992486--50992584	41	2.4	42	83	11	134	34	15	29	21	1.94
50995145--50995206	32	1.9	33	86	3	90	35	0	4	59	1.19
50997908--50997932	12	2.1	12	100	0	50	24	36	24	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50998093--50998134	9	4.7	9	87	0	66	42	23	9	23	1.83
50998093--50998134	18	2.3	18	100	0	84	42	23	9	23	1.83
50998172--50998224	6	8.8	6	100	0	106	16	0	16	66	1.26
50998172--50998237	18	3.5	20	93	4	95	19	0	13	66	1.24
50998265--50998308	18	2.4	18	88	0	61	13	2	43	40	1.57
51002936--51003019	25	3.4	25	77	6	98	23	26	21	28	1.99
51002937--51003049	50	2.3	50	84	3	138	25	23	22	28	1.99
51005852--51005903	27	2.0	26	84	3	68	38	19	0	42	1.51
51005788--51006024	90	2.6	92	86	2	298	41	14	0	43	1.51
51012922--51012975	27	2.0	28	89	7	85	24	31	0	44	1.54
51013352--51013415	13	5.2	12	71	19	53	35	3	0	60	1.12
51013989--51014034	14	3.2	14	87	3	56	43	4	15	36	1.66
51014083--51014209	57	2.2	57	83	12	163	37	3	4	54	1.40
51015545--51015599	28	2.0	28	82	13	69	50	1	12	34	1.51
51015648--51015683	18	2.1	16	90	10	54	61	0	5	33	1.19
51017639--51017727	46	1.9	46	97	0	169	29	21	16	32	1.95
51022966--51022994	6	4.8	6	100	0	58	68	13	0	17	1.20
51023376--51023414	18	2.1	19	90	4	62	56	5	7	30	1.49
51023986--51024024	12	3.2	12	85	7	51	56	2	0	41	1.13
51024611--51024674	15	4.3	15	75	16	62	39	4	3	53	1.38
51024686--51024731	24	1.9	25	82	8	60	43	4	6	45	1.49
51031323--51031823	69	7.3	69	93	0	842	45	20	7	26	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51031341--51031808	45	10.2	45	65	18	155	45	20	7	26	1.76
51032576--51032732	41	3.8	41	83	0	197	31	28	21	19	1.97
51033604--51033673	36	2.0	35	88	8	106	52	4	1	41	1.30
51041367--51041560	51	3.8	51	80	7	223	26	14	25	32	1.95
51041367--51041560	102	1.9	102	88	4	293	26	14	25	32	1.95
51042977--51043016	6	6.7	6	97	0	71	65	0	17	17	1.28
51047814--51047931	36	3.3	36	81	2	130	37	35	11	15	1.84
51049053--51049086	17	2.1	17	88	5	52	17	17	5	58	1.57
51053722--51053749	14	2.0	14	100	0	56	7	14	28	50	1.69
51070990--51071043	24	2.2	25	84	12	69	29	0	7	62	1.22
51071320--51071405	42	2.0	42	97	0	163	32	17	26	23	1.96
51078380--51078440	23	2.7	23	86	0	77	16	14	26	42	1.87
51080239--51080341	54	1.9	54	95	0	188	33	23	16	27	1.96
51107775--51107804	12	2.5	12	94	0	51	23	40	30	6	1.80
51112678--51112818	42	3.4	42	81	0	174	25	20	23	30	1.98
51119640--51119677	15	2.5	15	86	0	58	36	5	0	57	1.21
51120632--51120683	3	17.3	3	95	0	95	32	1	0	65	1.04
51129283--51129355	28	2.5	30	76	10	80	46	13	10	28	1.77
51129688--51129826	68	2.0	68	100	0	278	48	5	2	42	1.41
51129832--51129907	18	4.2	17	76	18	57	63	2	1	32	1.17
51129832--51130003	20	8.7	19	67	21	70	59	4	1	34	1.26
51129918--51130005	20	4.4	20	73	9	81	57	2	2	37	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51130561--51130603	11	4.0	11	81	3	52	23	2	6	67	1.27
51130539--51130710	10	17.3	10	70	8	91	27	5	5	61	1.39
51130799--51130929	9	13.7	9	68	21	54	30	1	5	62	1.26
51130808--51130853	19	2.4	18	82	10	56	21	2	10	65	1.35
51130819--51130858	19	2.1	19	90	9	64	20	0	10	70	1.16
51131220--51131313	9	10.4	9	81	11	104	32	0	2	64	1.05
51131220--51131313	28	3.5	26	81	14	102	32	0	2	64	1.05
51131229--51131313	19	4.7	18	78	9	93	34	0	1	64	1.01
51133889--51134079	98	1.9	98	92	2	321	36	25	10	27	1.89
51136292--51136418	41	3.1	40	81	7	132	33	27	14	24	1.95
51139938--51139979	18	2.3	18	87	0	66	16	28	11	42	1.84
51140008--51140383	165	2.3	165	91	0	556	23	21	17	38	1.93
51140745--51140807	18	3.5	18	82	8	74	22	26	9	41	1.84
51140755--51140826	18	4.0	18	81	3	56	25	23	6	44	1.78
51141025--51142021	192	5.0	193	79	8	968	23	23	15	37	1.92
51141425--51142021	210	2.8	209	86	2	797	22	22	15	39	1.92
51142084--51142133	18	2.8	18	87	0	64	24	26	10	40	1.86
51142898--51142933	18	2.0	18	88	0	54	27	25	11	36	1.90
51143608--51147960	899	4.8	898	96	0	7707	26	17	15	40	1.89
51148705--51148746	18	2.3	18	87	0	57	16	35	14	33	1.89
51148559--51149027	198	2.4	197	88	2	672	25	28	15	30	1.96
51148986--51149061	33	2.3	33	86	0	107	26	23	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51149170--51149540	198	1.9	198	92	0	625	26	29	14	29	1.95
51149482--51149526	18	2.5	18	77	0	54	22	35	13	28	1.92
51152612--51152672	29	2.1	29	100	0	122	44	21	6	27	1.77
51152980--51153022	21	2.0	23	86	9	63	51	4	11	32	1.59
51154069--51154186	55	2.1	55	93	1	200	32	19	23	24	1.98
51157755--51157820	20	3.3	20	80	0	78	19	19	19	40	1.91
51171103--51171132	16	1.9	16	93	6	53	50	20	0	30	1.49
51172262--51172358	25	3.8	25	80	5	106	30	17	24	26	1.97
51177091--51177130	20	2.0	20	85	9	55	45	0	12	42	1.42
51177734--51177803	13	5.3	12	74	16	50	42	1	24	31	1.63
51177734--51177792	27	2.2	26	84	3	73	44	0	25	30	1.55
51180395--51180421	14	1.9	14	100	0	54	14	25	22	37	1.93
51180656--51180690	18	1.9	18	88	0	52	62	0	2	34	1.10
51186357--51186529	28	6.2	28	89	0	247	34	12	29	24	1.91
51186357--51186546	84	2.3	84	89	2	294	32	12	30	24	1.92
51186393--51186557	28	6.0	27	84	9	110	31	12	29	26	1.93
51186554--51186611	28	2.1	27	81	9	64	39	20	18	20	1.92
51191810--51191844	15	2.2	16	90	5	54	37	22	0	40	1.55
51195927--51195964	10	3.6	10	86	13	58	36	0	2	60	1.11
51216873--51217165	50	5.7	50	83	2	316	27	21	28	22	1.99
51219876--51220499	51	12.4	51	82	3	670	31	16	23	29	1.96
51222016--51222078	3	21.0	3	96	0	117	33	1	0	65	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51237244--51237320	25	3.1	26	81	10	90	29	12	31	25	1.93
51237254--51237336	25	3.3	25	86	0	103	33	12	31	22	1.91
51239051--51239090	18	2.2	19	90	4	64	40	32	7	20	1.80
51267554--51267595	13	3.2	13	86	6	57	23	0	0	76	0.79
51267555--51267594	7	5.7	7	90	0	62	22	0	0	77	0.77
51268275--51268372	33	2.9	33	74	8	108	55	3	1	40	1.22
51268321--51268377	25	2.3	26	87	9	91	57	0	0	42	0.98
51268429--51268521	33	2.8	33	75	9	98	54	3	1	40	1.23
51268470--51268526	25	2.3	26	84	9	82	57	1	0	40	1.09
51268529--51268576	23	2.1	23	88	7	71	37	0	0	62	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211