genome.fa.s14.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  115  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32377693--32377797	44	2.5	40	73	15	104	31	28	4	35	1.78
32377691--32377800	45	2.6	44	78	8	122	31	28	5	34	1.80
32377781--32377830	16	3.1	16	94	0	82	34	36	0	30	1.58
32379505--32379587	25	3.2	25	77	9	87	18	25	24	32	1.97
32379664--32379692	14	2.1	14	100	0	58	20	13	6	58	1.58
32382011--32382138	62	2.1	61	86	1	175	23	25	25	25	2.00
32384853--32384889	19	1.9	19	89	10	58	27	0	27	45	1.54
32397937--32397995	13	4.8	12	70	17	50	52	1	35	10	1.45
32397939--32397995	19	3.1	19	69	19	57	50	1	36	10	1.47
32398887--32398957	35	2.0	35	91	0	115	47	8	5	38	1.57
32400895--32400972	34	2.3	34	80	4	86	42	12	12	32	1.81
32417694--32417786	48	2.0	47	85	8	127	49	7	6	36	1.57
32425941--32425976	11	3.2	11	88	4	54	27	2	0	69	1.02
32426047--32426140	27	3.5	27	97	0	170	30	23	32	12	1.92
32426210--32426253	21	2.1	21	91	0	70	29	2	11	56	1.46
32426341--32426386	16	2.9	16	80	3	58	60	2	2	34	1.21
32426419--32426500	38	2.2	38	95	0	146	40	2	2	54	1.26
32426533--32426654	60	2.0	60	85	6	167	53	13	0	31	1.46
32426642--32426808	27	7.2	21	76	16	104	53	13	0	32	1.45
32426669--32426799	8	15.4	8	66	20	61	50	13	0	35	1.48
32426695--32426882	19	9.7	19	68	22	108	53	12	0	33	1.39
32426695--32426799	27	4.1	27	90	7	159	52	12	0	35	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32426722--32426870	67	2.3	60	80	11	138	55	12	0	32	1.37
32426878--32426944	27	2.5	27	92	0	107	13	31	23	31	1.93
32426878--32426955	27	2.9	27	83	14	99	15	30	24	29	1.95
32427028--32427058	16	1.9	16	93	0	53	54	3	0	41	1.16
32427287--32427316	15	2.0	15	93	0	51	56	0	6	36	1.26
32428387--32428434	17	2.8	17	70	0	51	45	0	0	54	0.99
32429109--32429134	3	8.7	3	100	0	52	65	0	0	34	0.93
32430284--32430599	41	7.8	40	78	5	287	22	20	28	29	1.98
32430286--32430599	81	3.9	81	80	5	330	22	20	28	29	1.98
32430280--32430558	122	2.3	121	85	3	353	21	20	28	29	1.98
32431064--32431114	21	2.4	21	83	0	66	27	1	37	33	1.68
32431196--32431265	7	10.1	7	84	3	70	14	0	55	30	1.39
32431201--32431239	20	2.0	20	100	0	78	17	0	51	30	1.46
32431345--32431401	21	2.7	21	83	5	62	26	0	35	38	1.57
32435714--32435744	5	6.2	5	100	0	62	19	19	0	61	1.35
32435998--32436039	7	6.1	7	86	5	59	35	0	19	45	1.50
32435994--32436037	20	2.1	21	91	4	72	34	0	15	50	1.45
32436382--32436423	7	6.1	7	86	5	59	35	0	19	45	1.50
32436378--32436421	20	2.1	21	91	4	72	34	0	15	50	1.45
32436697--32437084	9	46.2	9	70	18	248	46	20	1	32	1.59
32436697--32437105	25	16.9	25	75	10	343	45	19	1	33	1.59
32436764--32437084	34	9.8	34	74	17	211	45	20	0	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32436979--32437059	42	1.9	42	94	0	144	46	18	1	33	1.57
32436679--32437084	16	24.9	16	69	17	186	46	19	1	32	1.58
32438386--32438471	21	4.1	21	81	0	100	31	15	47	5	1.68
32438781--32439002	86	2.6	86	84	2	284	31	17	23	27	1.97
32438792--32439004	43	5.0	43	77	2	194	31	17	23	26	1.97
32440781--32440876	35	2.7	35	81	0	120	14	11	34	39	1.82
32457375--32457849	44	10.8	44	84	0	581	28	20	24	25	1.99
32457374--32457857	88	5.5	88	88	0	689	29	20	24	25	1.99
32458037--32458069	12	2.8	12	100	0	66	78	0	0	21	0.75
32458036--32458086	14	3.7	13	79	10	57	80	1	0	17	0.81
32462534--32462571	19	2.0	19	100	0	76	52	15	5	26	1.64
32462613--32462652	20	2.0	20	85	9	55	37	12	7	42	1.71
32463652--32463682	9	3.4	9	100	0	62	77	12	0	9	0.99
32475160--32475198	7	5.3	7	82	11	51	51	2	0	46	1.14
32475212--32475309	17	5.4	17	68	16	54	44	4	5	45	1.44
32475490--32475519	15	2.0	15	93	0	51	50	0	0	50	1.00
32476848--32477106	127	2.0	126	97	0	491	28	19	13	38	1.90
32477929--32478022	47	2.0	47	93	0	161	29	21	9	39	1.85
32481901--32481946	22	2.1	22	100	0	92	39	13	4	43	1.63
32482579--32482645	23	2.9	23	93	0	107	35	5	29	28	1.81
32483429--32483494	31	2.1	31	88	0	96	28	33	12	25	1.92
32483769--32483827	30	2.0	30	86	6	84	32	15	20	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32486831--32486879	19	2.5	19	90	3	71	6	18	2	73	1.14
32489356--32489422	23	2.9	23	93	0	107	37	4	29	28	1.77
32490208--32490273	31	2.1	31	91	0	105	28	31	12	27	1.92
32490208--32490281	31	2.4	31	86	4	87	32	29	10	27	1.90
32490548--32490606	30	2.0	30	83	6	75	32	15	18	33	1.92
32491269--32491310	18	2.3	18	88	8	59	57	4	11	26	1.54
32494068--32494104	17	2.2	17	100	0	74	35	27	16	21	1.94
32494636--32494760	35	3.6	35	93	0	196	25	14	16	43	1.86
32496712--32496760	21	2.3	21	92	0	80	30	48	14	6	1.67
32496903--32496961	29	2.0	29	100	0	118	23	28	27	20	1.99
32501039--32501072	17	1.9	18	88	5	52	35	44	0	20	1.52
32505167--32505204	20	1.9	20	88	0	58	39	10	13	36	1.79
32506008--32506045	15	2.5	15	83	8	51	52	13	2	31	1.54
32506850--32506907	25	2.4	24	80	8	73	34	24	22	18	1.96
32509724--32509783	27	2.2	28	82	8	79	36	18	25	20	1.94
32509768--32509825	27	2.1	27	81	6	64	37	13	27	20	1.91
32512961--32513010	23	2.1	23	81	7	55	62	4	18	16	1.48
32514223--32514254	3	10.7	3	100	0	64	68	0	0	31	0.90
32520357--32520412	18	3.2	18	76	5	60	60	1	0	37	1.07
32520556--32520613	18	3.2	18	72	20	57	56	1	0	41	1.09
32520362--32520785	200	2.1	204	88	5	632	45	5	6	42	1.54
32520731--32520805	29	2.7	29	82	14	86	64	4	0	32	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32522186--32522240	18	2.8	20	75	13	69	27	23	21	27	1.99
32522356--32522400	22	2.1	22	91	4	74	31	22	24	22	1.99
32522362--32522409	21	2.2	22	85	3	62	41	25	16	16	1.89
32522519--32522583	34	1.9	34	90	0	103	32	12	13	41	1.82
32525361--32525403	19	2.4	17	81	14	50	32	2	0	65	1.06
32529752--32529843	12	7.5	12	72	9	69	72	7	5	14	1.24
32529745--32529842	18	5.3	18	71	10	63	74	7	6	12	1.21
32529752--32529845	6	15.3	6	78	8	55	73	7	5	13	1.23
32529791--32529911	44	2.8	42	81	7	125	74	4	10	9	1.21
32531988--32532110	43	2.9	43	92	1	194	31	19	23	25	1.98
32532287--32532399	44	2.6	44	81	2	138	29	19	20	30	1.97
32534102--32534144	19	2.4	17	81	14	50	32	2	0	65	1.06
32535523--32535561	11	3.5	11	92	0	69	46	0	0	53	1.00
32536904--32536969	21	3.2	21	73	12	66	60	6	0	33	1.21
32536904--32536969	20	3.2	20	74	16	64	60	6	0	33	1.21
32536898--32537004	43	2.5	44	80	11	132	57	6	0	35	1.24
32537303--32537354	25	2.1	25	96	0	95	44	19	1	34	1.62
32551591--32551656	20	3.3	20	91	0	96	40	13	6	39	1.69
32559045--32559208	86	1.9	85	88	1	247	32	20	15	31	1.94
32560791--32560832	22	1.9	22	100	0	84	45	4	23	26	1.73
32564458--32564541	39	2.1	39	84	4	105	52	7	10	29	1.63
32566608--32566675	22	3.3	22	72	15	56	52	0	4	42	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32566673--32566717	19	2.4	19	85	7	56	17	2	4	75	1.07
32567084--32567189	7	14.9	7	75	14	65	35	41	0	22	1.54
32567592--32567869	41	6.8	41	88	0	358	29	30	19	20	1.97
32567904--32567980	40	1.9	41	83	2	102	22	20	22	35	1.96
32569112--32569183	18	3.9	18	80	10	67	58	2	1	37	1.21
32569119--32569184	8	7.5	8	79	15	69	59	3	1	36	1.22
32569212--32569281	22	3.2	21	78	13	70	55	0	2	41	1.14
32569234--32569298	21	3.0	21	84	11	69	50	0	3	46	1.17
32570986--32571039	19	2.8	19	94	0	90	40	11	14	33	1.82
32571903--32572017	23	4.9	24	74	14	96	33	6	3	56	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211