genome.fa.s14.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  175  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51912587--51912666	24	3.5	23	88	8	110	35	11	0	53	1.37
51918179--51918317	37	3.8	37	82	5	165	34	16	15	33	1.90
51926452--51926593	47	3.1	47	86	4	198	23	21	11	42	1.86
51926457--51926591	45	3.0	45	88	2	189	24	22	11	40	1.88
51927475--51927525	25	2.0	25	92	7	86	39	19	3	37	1.70
51927931--51927982	21	2.4	22	93	6	88	36	28	23	11	1.90
51927924--51928002	23	3.6	22	85	10	99	35	26	22	15	1.94
51927908--51928018	23	5.0	23	82	7	97	36	24	20	18	1.94
51928275--51928376	51	2.0	51	96	0	186	42	23	1	32	1.65
51928783--51928862	42	1.9	42	87	5	117	26	17	23	32	1.97
51932348--51932410	29	2.2	28	82	5	72	23	14	14	47	1.80
51932624--51932973	124	2.8	124	94	0	603	28	15	21	33	1.94
51936086--51936267	55	3.3	55	95	2	312	45	4	10	39	1.61
51936262--51936643	29	13.3	29	93	3	639	30	0	25	43	1.55
51936262--51936643	88	4.4	87	94	4	675	30	0	25	43	1.55
51938953--51939018	31	2.2	30	94	2	114	62	0	1	36	1.05
51939019--51939131	51	2.2	51	95	0	199	41	0	29	29	1.56
51939103--51939157	22	2.5	22	96	0	101	41	0	29	29	1.56
51939382--51939443	29	2.2	28	82	2	70	46	14	12	25	1.80
51939550--51939702	43	3.6	42	84	3	189	22	18	28	30	1.98
51940541--51940587	23	2.0	23	87	0	67	42	12	4	40	1.63
51944998--51945049	27	1.9	27	88	0	77	15	30	17	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51945153--51945305	45	3.4	45	79	7	182	25	23	8	42	1.82
51961004--51961037	17	2.0	17	88	0	50	50	11	20	17	1.77
51961915--51962023	41	2.7	41	88	0	146	26	20	23	29	1.99
51962381--51962449	18	3.3	18	70	30	57	34	5	14	44	1.69
51962392--51962466	25	3.2	25	78	18	106	30	8	16	45	1.75
51962377--51962466	45	2.0	45	100	0	180	33	6	15	44	1.73
51962377--51962445	20	3.2	20	77	18	84	36	5	14	43	1.70
51963976--51964000	5	5.0	5	100	0	50	20	0	0	80	0.72
51970674--51970780	53	2.0	53	96	3	198	40	12	25	22	1.88
51974865--51974889	5	5.0	5	100	0	50	20	0	0	80	0.72
51976246--51976385	41	3.4	41	86	2	194	20	24	6	49	1.72
51976547--51976585	20	2.0	20	84	0	51	51	2	5	41	1.38
51980514--51980556	17	2.5	17	84	0	59	27	32	23	16	1.96
51984787--51984815	15	1.9	15	100	0	58	27	27	13	31	1.94
51985654--51985682	15	1.9	15	100	0	58	27	27	13	31	1.94
51984488--51990558	867	7.0	867	98	0	11725	38	20	11	30	1.87
51988255--51988283	15	1.9	15	100	0	58	27	27	13	31	1.94
51989122--51989150	15	1.9	15	100	0	58	27	27	13	31	1.94
51989989--51990017	15	1.9	15	100	0	58	27	27	13	31	1.94
52018100--52018188	45	2.0	45	95	0	160	32	24	17	24	1.97
52018199--52018334	50	2.7	52	86	5	197	30	27	17	25	1.97
52026552--52026594	13	3.4	13	74	6	52	25	37	16	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52028047--52028072	13	2.0	13	100	0	52	30	7	30	30	1.85
52032977--52033008	16	2.0	16	93	0	55	25	15	0	59	1.36
52033145--52033232	46	1.9	45	84	6	115	32	28	15	22	1.95
52033238--52033424	51	3.7	51	80	9	231	30	26	17	25	1.97
52033236--52033420	101	1.8	102	90	5	304	30	25	17	25	1.97
52033231--52033454	101	2.2	102	81	7	278	29	27	16	26	1.97
52044680--52044719	22	2.0	21	85	14	57	55	15	2	27	1.53
52045375--52045534	43	3.7	43	81	8	173	30	29	22	18	1.97
52045375--52045534	86	1.9	86	81	7	200	30	29	22	18	1.97
52051626--52051717	26	3.5	26	83	0	130	16	14	31	38	1.88
52058744--52058775	9	3.6	9	91	0	55	25	3	18	53	1.59
52058751--52058922	91	1.9	90	89	4	265	36	6	8	47	1.62
52063295--52063342	24	2.0	24	84	8	62	45	0	14	39	1.45
52067334--52067472	37	3.8	37	96	0	233	25	30	18	25	1.98
52070855--52070913	25	2.5	24	89	8	93	54	6	3	35	1.44
52071163--52071214	27	1.9	27	88	0	77	17	26	34	21	1.95
52072407--52072456	18	2.9	17	84	3	64	52	0	2	46	1.12
52099445--52099586	63	2.3	63	79	0	149	26	6	33	33	1.82
52114787--52114816	15	2.0	15	93	0	51	36	30	13	20	1.90
52121768--52121808	21	2.0	21	100	0	82	34	21	14	29	1.93
52122139--52122180	21	2.0	21	90	9	68	38	26	11	23	1.90
52127029--52127074	18	2.7	18	90	6	69	32	10	13	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52130222--52130274	19	2.8	20	82	8	65	30	33	7	28	1.85
52130651--52130705	28	1.9	29	85	3	76	32	14	21	30	1.93
52141442--52141485	23	1.9	23	90	0	70	52	0	6	40	1.28
52142147--52142196	24	2.0	25	92	3	84	30	8	14	48	1.72
52144104--52144298	41	4.8	41	84	3	250	32	29	20	17	1.96
52151319--52151426	15	7.2	15	68	12	78	27	21	7	43	1.79
52151309--52151432	30	4.1	30	92	1	194	27	23	6	42	1.78
52155997--52156114	15	7.9	15	68	21	61	27	23	6	42	1.79
52155997--52156120	30	4.1	30	93	1	203	26	24	6	42	1.78
52163961--52164002	22	1.9	22	90	9	68	57	9	14	19	1.64
52165377--52165537	24	6.6	24	71	12	112	28	39	7	24	1.82
52165398--52165888	48	8.9	56	72	18	304	28	37	10	23	1.89
52165579--52165693	33	3.5	33	86	0	158	27	37	12	22	1.90
52165489--52165861	114	3.3	110	89	7	486	28	37	11	23	1.89
52165717--52165813	33	2.9	33	84	0	131	30	37	10	21	1.87
52165816--52165878	24	2.6	24	77	5	65	17	44	15	22	1.86
52165527--52165862	114	2.9	114	93	4	537	27	36	12	23	1.90
52165860--52165967	57	1.9	57	84	0	144	25	39	12	21	1.89
52166044--52166079	18	2.0	18	89	10	56	22	47	5	25	1.73
52166087--52166206	60	2.0	60	96	3	224	20	48	5	26	1.70
52171223--52171310	29	3.0	29	81	3	97	36	4	26	32	1.77
52181909--52181965	26	2.1	26	93	6	96	36	22	12	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52190121--52190175	5	11.0	5	98	0	83	34	0	5	60	1.20
52191693--52191725	16	1.9	18	88	11	52	51	6	0	42	1.26
52194416--52194472	18	3.1	17	78	14	51	14	7	7	71	1.28
52194438--52194472	18	1.9	18	88	0	52	17	5	5	71	1.25
52196232--52196279	21	2.2	21	85	10	62	66	0	2	31	1.03
52199610--52200360	388	1.9	389	94	0	1333	32	14	13	39	1.85
52200352--52200470	63	1.9	63	89	0	184	36	21	10	31	1.88
52204757--52205184	45	9.6	44	67	7	191	25	23	19	30	1.98
52204747--52205209	89	5.2	89	93	0	755	26	23	19	30	1.98
52214676--52214714	20	2.0	20	90	10	62	15	23	5	56	1.59
52214979--52215111	50	2.7	50	72	0	131	23	30	18	27	1.98
52221543--52221586	20	2.1	21	87	4	63	22	11	0	65	1.24
52227462--52227519	26	2.2	26	100	0	116	58	24	3	13	1.51
52228593--52228630	20	2.0	20	94	5	69	26	10	0	63	1.27
52235713--52235777	26	2.6	24	81	11	85	13	26	18	41	1.88
52256711--52256807	34	2.9	34	77	7	108	20	22	12	44	1.85
52259776--52259858	33	2.5	32	82	5	103	26	28	14	30	1.95
52259768--52259993	101	2.2	101	82	0	263	27	23	14	34	1.93
52267300--52267510	101	2.1	101	83	3	255	29	21	14	34	1.93
52267401--52267478	33	2.4	34	78	6	81	28	21	16	33	1.95
52276506--52276583	36	2.2	36	81	6	88	41	3	10	44	1.56
52277876--52278155	142	2.0	142	94	0	488	37	14	17	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52278329--52278526	40	4.9	40	81	3	202	31	21	21	24	1.98
52278577--52278665	40	2.2	40	83	4	106	38	21	20	20	1.94
52278598--52278686	40	2.2	40	85	0	115	35	22	21	20	1.96
52278431--52278997	148	3.9	146	83	6	639	34	19	22	23	1.97
52278729--52278840	41	2.8	41	87	1	154	31	20	22	25	1.98
52279150--52279200	21	2.5	21	78	9	61	15	0	35	49	1.45
52279150--52279208	21	2.8	20	72	7	55	16	0	35	47	1.47
52279373--52279466	20	4.6	20	73	15	66	22	0	29	47	1.51
52279399--52279563	14	11.6	14	71	10	61	22	0	29	47	1.56
52279418--52279484	34	1.9	35	90	3	109	20	0	28	50	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211