genome.fa.s14.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  170  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50238217--50238642	61	7.1	61	67	17	282	52	4	1	41	1.30
50238528--50238593	15	4.4	14	73	19	53	62	0	0	37	0.96
50238540--50238592	16	3.2	16	86	10	63	64	0	0	35	0.94
50238525--50238593	28	2.3	29	80	14	77	60	0	0	39	0.97
50238614--50239187	38	14.4	38	65	23	154	53	4	1	40	1.30
50238721--50238831	55	2.0	55	96	0	204	54	4	0	39	1.27
50238927--50239086	28	5.5	28	65	20	87	56	2	1	40	1.21
50238939--50239110	16	10.2	17	67	18	74	56	2	1	38	1.22
50238939--50239004	18	3.9	17	82	11	64	59	0	1	39	1.07
50239073--50239110	18	2.2	17	90	4	58	63	0	2	34	1.09
50239072--50239275	95	2.2	95	96	0	374	51	4	1	41	1.33
50239166--50239205	18	2.4	16	80	12	53	62	0	0	37	0.95
50239172--50239363	56	3.3	54	70	21	163	51	3	1	43	1.28
50239377--50239435	16	3.9	16	71	26	56	57	3	1	37	1.25
50239863--50239928	15	4.4	14	71	19	53	60	0	1	37	1.06
50239848--50239903	28	2.0	29	86	10	80	58	1	0	39	1.08
50239875--50239919	16	2.8	16	80	16	56	60	0	2	37	1.09
50239890--50239927	18	2.2	17	90	4	58	63	0	2	34	1.09
50237678--50240593	601	4.9	596	80	13	3271	52	4	1	41	1.31
50241981--50242084	49	2.1	49	94	0	181	50	10	7	31	1.65
50245667--50245708	22	1.9	22	100	0	84	54	7	28	9	1.59
50251331--50251369	17	2.2	17	86	4	51	41	2	5	51	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50255757--50255796	21	2.0	19	85	9	53	47	10	10	32	1.70
50258704--50258755	25	2.0	26	85	3	70	25	3	21	50	1.65
50260071--50260102	16	2.0	16	100	0	64	56	6	12	25	1.59
50261104--50261197	47	2.0	47	89	0	143	29	14	22	32	1.94
50262772--50262822	21	2.4	21	90	0	75	35	17	43	3	1.68
50262722--50262889	87	1.9	87	90	4	268	38	17	31	12	1.87
50263233--50263538	43	7.1	43	86	3	395	22	20	25	30	1.98
50263246--50263586	86	4.0	87	83	4	347	24	20	24	30	1.99
50264728--50264785	21	2.8	21	84	7	66	56	3	1	37	1.26
50264755--50264830	9	8.0	9	76	12	55	56	2	2	38	1.27
50264750--50264831	29	2.8	29	79	5	85	57	2	2	37	1.25
50265305--50265379	27	2.8	26	76	15	80	32	0	4	64	1.12
50265313--50265352	19	2.1	19	90	0	62	32	0	2	65	1.06
50265341--50265398	19	3.1	19	80	14	75	32	0	5	62	1.18
50265751--50265788	20	2.0	21	85	15	55	28	7	2	60	1.38
50274015--50274109	48	2.0	48	83	2	120	20	26	20	33	1.96
50274093--50274165	25	3.0	23	75	13	65	26	27	19	27	1.99
50277141--50277402	131	2.0	131	96	0	479	28	7	28	36	1.84
50286424--50286458	17	2.1	17	100	0	70	17	25	22	34	1.96
50298833--50298888	19	2.8	20	83	10	78	3	21	7	67	1.30
50298832--50298886	21	2.7	20	80	11	67	3	20	7	69	1.28
50302169--50302214	18	2.6	17	83	16	58	4	19	0	76	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50303976--50304042	28	2.4	28	80	9	82	64	7	7	20	1.44
50307403--50307526	30	4.1	30	93	1	203	25	24	6	43	1.78
50307413--50307520	15	7.2	15	67	12	78	25	22	7	44	1.79
50312095--50312218	30	4.1	30	93	1	203	25	24	6	43	1.78
50312105--50312212	15	7.2	15	67	12	78	25	22	7	44	1.79
50315028--50315086	30	2.0	30	86	0	82	23	20	15	40	1.90
50333841--50333920	29	2.7	29	80	3	97	17	10	26	46	1.79
50341433--50341469	16	2.3	16	100	0	74	18	21	5	54	1.64
50351589--50351629	18	2.2	19	86	4	57	60	4	7	26	1.43
50354074--50354104	16	1.9	16	93	0	53	0	16	0	83	0.64
50367034--50367105	36	2.0	35	81	2	81	33	25	11	30	1.90
50373038--50373076	20	2.1	19	85	9	53	33	30	20	15	1.94
50387457--50387498	20	2.2	19	83	12	50	61	2	19	16	1.44
50389956--50390091	27	5.0	27	81	3	132	35	14	21	28	1.93
50390215--50390243	9	3.3	9	95	4	51	20	0	24	55	1.44
50395829--50395857	14	2.0	15	93	6	51	6	10	0	82	0.83
50403163--50403203	20	2.0	22	85	9	59	70	4	9	14	1.30
50403367--50403424	22	2.6	22	81	7	64	41	15	5	37	1.70
50405932--50405981	23	2.2	24	78	10	59	36	2	6	56	1.36
50405953--50405983	16	1.9	16	100	0	62	35	6	6	51	1.53
50416643--50417474	44	19.4	44	81	5	932	26	25	16	31	1.97
50416925--50416993	34	2.0	34	94	0	120	24	31	13	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50416663--50417481	298	2.7	298	95	0	1406	26	25	16	31	1.96
50417223--50417291	34	2.0	34	94	0	120	24	31	13	30	1.93
50418736--50418778	15	2.7	15	85	7	50	13	20	0	65	1.27
50440898--50441424	267	2.0	267	96	0	982	30	16	12	39	1.86
50453641--50453684	10	4.6	10	83	5	56	34	0	43	22	1.54
50454295--50454369	32	2.3	32	95	0	132	21	1	20	57	1.48
50456413--50456456	20	2.3	18	84	7	52	18	22	0	59	1.38
50457850--50457946	48	2.0	48	100	0	194	43	14	12	29	1.82
50460547--50460584	19	2.1	19	90	9	62	50	0	7	42	1.31
50464684--50464715	14	2.3	14	100	0	64	46	0	0	53	1.00
50468864--50468899	16	2.2	16	100	0	72	30	30	11	27	1.91
50470775--50471202	142	3.0	142	90	2	639	34	16	20	28	1.94
50471248--50472536	100	12.9	100	83	4	1427	32	23	20	23	1.98
50478895--50478945	20	2.5	21	83	6	68	76	9	3	9	1.14
50481271--50481424	44	3.5	43	74	12	111	31	18	20	29	1.96
50481299--50482003	142	5.0	142	90	0	1063	33	18	20	27	1.96
50481724--50481954	44	5.0	44	72	12	185	32	19	22	26	1.97
50482056--50483296	100	12.4	100	83	2	1371	31	22	21	23	1.98
50482086--50483260	50	23.5	50	69	4	524	32	22	20	23	1.98
50484857--50484892	16	2.2	16	90	0	54	41	8	0	50	1.33
50505602--50505641	21	2.0	21	85	5	55	20	10	2	67	1.31
50515491--50515535	2	22.5	2	100	0	90	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50515582--50515615	11	2.8	12	91	8	52	29	29	0	41	1.57
50524441--50524623	50	3.6	50	91	0	276	31	24	10	33	1.89
50526557--50526596	19	2.1	19	100	0	80	10	27	37	25	1.88
50530268--50530314	22	2.0	24	84	8	62	23	8	2	65	1.31
50535118--50535163	24	1.9	24	86	0	65	45	17	26	10	1.81
50536337--50536383	20	2.3	20	85	0	67	29	36	12	21	1.91
50544675--50544787	40	2.8	40	86	4	149	35	23	22	18	1.96
50544853--50544964	41	2.8	40	90	5	163	20	20	28	30	1.98
50550204--50550298	43	2.2	43	90	0	145	33	11	9	45	1.73
50550570--50550757	43	4.4	43	83	5	211	22	13	31	31	1.93
50550575--50550757	86	2.1	86	84	6	237	23	13	32	30	1.93
50550912--50551209	45	6.8	45	70	13	180	28	19	24	27	1.98
50551945--50551990	21	2.0	24	88	12	71	23	8	0	67	1.18
50559123--50559239	43	2.8	43	80	5	123	17	15	11	55	1.68
50564780--50564893	59	1.9	59	92	0	192	30	12	9	47	1.73
50566331--50566527	25	7.9	25	78	3	155	26	16	21	35	1.94
50566566--50566636	25	2.9	24	82	2	70	29	18	21	30	1.97
50566597--50566667	25	2.9	25	81	8	83	30	19	23	25	1.98
50572671--50572710	21	1.9	21	85	10	55	42	10	15	32	1.79
50582807--50582871	32	2.0	32	100	0	130	38	21	15	24	1.92
50597804--50597856	21	2.5	21	87	0	70	33	16	45	3	1.66
50603253--50603315	24	2.6	24	82	0	72	28	33	14	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50609419--50609476	28	2.1	28	100	0	116	27	15	13	43	1.85
50610859--50610912	20	2.7	20	82	2	63	27	3	27	40	1.73
50610983--50611023	21	2.0	21	85	9	57	19	4	36	39	1.73
50613361--50613395	17	2.1	17	100	0	70	42	11	22	22	1.85
50619866--50619942	26	3.0	26	86	0	109	19	18	23	38	1.93
50622716--50622846	27	4.9	27	79	0	136	32	14	21	32	1.93
50622716--50622846	54	2.4	54	77	0	154	32	14	21	32	1.93
50626142--50626211	30	2.3	30	82	0	86	40	14	27	18	1.89
50626192--50626330	30	4.6	30	73	8	104	38	11	22	27	1.88
50626196--50626422	60	3.8	61	77	7	198	37	13	22	25	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211