genome.fa.s14.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  20  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5327818--5327867	3	17.3	3	75	8	50	34	2	4	60	1.27
5327990--5328028	3	13.0	3	94	0	69	30	0	2	66	1.05
5339004--5339067	30	2.2	30	91	2	103	35	7	9	46	1.65
5351204--5351238	12	3.1	12	84	16	56	51	0	0	48	1.00
5351194--5351238	22	2.0	23	91	4	74	55	2	0	42	1.12
5351213--5351262	25	2.0	25	84	0	64	48	0	2	50	1.12
5352351--5352479	40	3.2	39	78	9	116	31	20	24	24	1.98
5352368--5352488	40	3.0	39	84	4	152	30	20	23	25	1.98
5352542--5352651	40	2.8	40	91	0	175	27	21	23	27	1.99
5352391--5352767	156	2.4	153	84	2	450	30	19	21	28	1.98
5352724--5352873	40	3.8	40	78	6	151	26	20	26	28	1.99
5352691--5352847	80	2.0	80	83	2	199	27	17	26	28	1.97
5353199--5353259	21	2.8	21	80	7	61	29	1	24	44	1.63
5353240--5353315	36	2.1	36	82	4	91	22	0	32	44	1.53
5353270--5353351	43	1.9	43	87	0	119	21	0	32	45	1.53
5356593--5356633	20	2.1	19	90	4	64	46	0	0	53	1.00
5359421--5359461	3	13.7	3	84	0	55	60	0	4	34	1.18
5359928--5359980	20	2.7	20	77	11	63	77	1	13	7	1.06
5360286--5360329	20	2.4	18	85	14	56	11	6	34	47	1.66
5366623--5366703	39	2.1	37	82	13	94	59	0	2	38	1.11
5371014--5371048	9	3.9	9	84	0	52	54	2	0	42	1.15
5372328--5372377	23	2.2	24	100	0	86	34	0	12	54	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5372337--5372379	13	3.5	13	75	18	56	34	0	13	51	1.42
5374215--5374239	13	1.9	13	100	0	50	28	8	8	56	1.57
5382281--5382330	23	2.2	23	92	3	84	40	0	10	50	1.36
5383727--5383784	17	3.4	17	75	17	57	50	0	5	44	1.24
5386290--5386321	14	2.1	16	88	11	50	43	40	0	15	1.47
5391021--5391160	46	3.0	46	97	0	262	34	8	27	29	1.87
5393242--5393266	12	2.1	12	100	0	50	60	16	0	24	1.36
5398315--5398491	89	2.0	89	88	1	266	32	12	14	41	1.83
5407086--5407150	18	3.7	18	91	4	98	26	20	16	36	1.93
5413826--5413885	30	2.0	30	96	0	111	25	3	15	56	1.54
5415116--5415308	95	2.0	95	98	0	377	39	20	9	30	1.84
5417939--5417997	31	1.9	31	85	0	82	33	5	10	50	1.58
5418784--5418860	9	8.1	9	70	24	52	62	3	2	31	1.27
5419124--5419163	22	1.9	22	90	10	66	40	0	0	60	0.97
5419648--5419714	31	2.3	31	85	12	88	28	2	7	61	1.38
5428316--5428366	22	2.4	20	81	18	59	39	0	3	56	1.18
5430108--5430202	11	9.4	11	69	23	57	38	4	0	56	1.19
5430091--5430229	41	3.5	39	78	8	145	35	2	0	60	1.17
5430119--5430202	28	2.9	29	85	7	100	38	3	0	58	1.16
5430140--5430211	29	2.4	31	84	11	105	36	2	0	61	1.11
5437998--5438123	63	2.0	62	96	1	234	42	7	10	39	1.68
5455892--5455936	23	2.0	23	82	8	56	51	2	2	44	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5456186--5456230	22	2.0	21	87	8	63	42	0	4	53	1.21
5456220--5456267	20	2.3	21	79	13	55	47	4	2	45	1.33
5460909--5460959	16	2.8	19	72	22	56	25	0	3	70	1.04
5474161--5474214	27	2.0	27	92	0	90	24	29	24	22	1.99
5479388--5479439	26	2.0	26	84	0	68	28	1	3	65	1.21
5479970--5480028	13	4.6	13	72	17	52	57	3	0	38	1.15
5483332--5483378	20	2.3	21	82	14	62	59	8	0	31	1.27
5483850--5483912	30	2.1	30	100	0	126	46	12	9	31	1.74
5485627--5485676	17	2.7	20	78	18	70	10	0	44	46	1.37
5489235--5489284	17	2.7	20	78	18	70	10	0	44	46	1.37
5493873--5493922	17	2.7	20	78	18	70	10	0	44	46	1.37
5495354--5495403	17	2.7	20	78	18	70	10	0	44	46	1.37
5496837--5497209	185	2.0	185	99	0	737	31	16	14	36	1.89
5503079--5503126	21	2.1	24	85	11	66	35	6	14	43	1.71
5507923--5507996	3	24.7	3	88	0	112	36	2	0	60	1.11
5508078--5508138	16	3.6	17	77	6	61	42	3	0	54	1.17
5508487--5508889	110	3.7	110	90	1	614	29	16	20	33	1.95
5512262--5512306	21	2.2	21	92	4	74	80	4	2	13	0.97
5512315--5512348	18	1.9	18	88	5	52	70	8	8	11	1.34
5513270--5513304	12	2.9	12	95	0	61	85	11	0	2	0.69
5513301--5513334	7	5.0	7	92	7	61	70	0	14	14	1.17
5514384--5514422	15	2.7	15	84	4	53	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5514823--5516187	41	32.8	41	69	16	562	30	22	21	25	1.99
5514821--5515368	128	4.3	128	90	3	847	31	21	21	25	1.98
5515129--5516186	213	5.1	212	73	15	751	30	22	21	25	1.99
5515339--5516187	124	6.8	124	84	11	1054	30	22	21	25	1.99
5515297--5516187	242	3.6	245	86	9	1140	29	22	21	26	1.99
5517769--5517850	3	27.7	3	87	7	123	31	2	0	65	1.05
5518326--5518747	109	3.8	111	89	1	618	30	17	19	32	1.95
5535798--5535858	28	2.2	28	85	5	81	45	0	3	50	1.17
5535910--5536218	59	5.2	58	66	20	188	41	2	4	51	1.36
5535899--5536308	120	3.4	119	94	1	721	42	2	4	50	1.36
5535972--5536279	61	5.1	61	69	19	250	41	1	6	50	1.37
5536024--5536075	15	3.6	15	80	12	56	44	0	1	53	1.11
5536003--5536308	59	5.2	54	68	22	197	42	1	4	51	1.31
5536130--5536192	15	4.1	16	76	11	60	42	0	0	57	0.99
5535973--5536276	59	5.1	58	67	23	209	41	1	6	50	1.37
5536273--5536314	15	2.7	16	82	14	52	45	0	2	52	1.13
5536264--5536305	15	2.9	15	82	10	52	47	0	0	52	1.00
5536459--5536546	45	2.0	45	86	6	126	32	26	5	35	1.80
5536528--5536573	16	2.9	16	90	0	74	21	32	6	39	1.79
5547844--5547875	17	1.9	16	93	6	55	78	0	0	21	0.76
5549840--5549906	9	7.4	9	86	0	80	43	26	7	22	1.80
5550047--5550076	13	2.3	13	100	0	60	16	0	43	40	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5553668--5553722	24	2.3	22	80	17	65	29	0	3	67	1.08
5567222--5567307	40	2.3	38	80	11	104	46	2	2	48	1.27
5568334--5568384	24	2.1	25	81	3	59	33	13	3	49	1.61
5570444--5570549	34	3.1	34	72	8	117	27	12	10	50	1.72
5571116--5571146	15	2.0	16	93	6	55	45	22	0	32	1.53
5585825--5585862	19	2.0	19	100	0	76	52	15	5	26	1.64
5599209--5599362	76	2.0	75	96	1	281	27	23	18	30	1.98
5600304--5600566	131	2.0	131	92	2	438	36	9	21	31	1.86
5604699--5604724	11	2.4	11	100	0	52	7	38	7	46	1.61
5607881--5607922	15	2.7	16	82	14	52	45	0	2	52	1.13
5607872--5607913	15	2.9	15	82	10	52	47	0	0	52	1.00
5608025--5608059	18	2.0	17	88	5	52	45	0	0	54	0.99
5607856--5608172	157	2.0	157	96	0	589	47	5	3	44	1.41
5608295--5608362	16	4.2	16	88	0	109	38	35	1	25	1.65
5610326--5610385	29	2.0	30	83	3	77	51	1	13	33	1.51
5611617--5611665	24	2.1	23	92	3	80	26	10	20	42	1.84
5619981--5620050	31	2.3	31	87	5	97	54	18	2	24	1.57
5625239--5625283	18	2.4	18	85	10	56	73	4	8	13	1.23
5625672--5625705	17	1.9	18	88	5	52	41	0	23	35	1.55
5630795--5630853	29	2.0	30	83	3	75	47	8	3	40	1.51
5635962--5635991	3	10.0	3	100	0	60	66	0	33	0	0.92
5640517--5640551	17	2.1	17	88	0	52	48	0	2	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5645880--5645909	15	2.0	15	93	0	51	50	0	0	50	1.00
5645905--5645958	13	4.1	13	75	13	56	50	1	0	48	1.11
5645895--5645964	26	2.7	25	76	12	70	51	1	0	47	1.09
5648949--5648992	23	2.0	22	86	13	63	43	4	0	52	1.22
5650777--5650872	49	2.0	48	89	2	147	41	21	15	20	1.90
5651065--5651128	17	3.6	17	74	15	67	46	14	12	26	1.79
5651083--5651136	17	2.9	19	71	20	60	46	16	12	24	1.82
5651066--5651136	36	2.0	36	97	0	133	46	15	12	25	1.81
5651800--5651842	22	2.0	22	90	9	70	51	2	0	46	1.13
5651802--5651854	21	2.5	21	81	9	54	56	1	0	41	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211