genome.fa.s14.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  46  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12203375--12203405	7	4.4	7	91	0	53	19	0	48	32	1.49
12204054--12204118	16	4.1	16	97	0	112	36	3	36	23	1.70
12204097--12204187	45	2.0	44	83	6	112	32	5	26	35	1.80
12204100--12204206	44	2.6	40	71	18	110	35	5	27	31	1.80
12204333--12204374	15	2.7	16	82	14	52	52	2	0	45	1.13
12204342--12204383	15	2.9	15	82	10	52	52	0	0	47	1.00
12204362--12204555	61	3.2	61	69	13	193	48	6	1	43	1.37
12204331--12204588	120	2.1	120	96	0	471	48	5	1	43	1.38
12204448--12204494	16	3.0	16	78	12	53	51	2	0	46	1.13
12207705--12207742	20	1.9	20	94	0	67	39	18	34	7	1.80
12218045--12218271	42	5.5	42	86	3	275	27	23	19	29	1.98
12222219--12222314	43	2.3	43	85	1	131	23	16	27	32	1.96
12224774--12224837	29	2.2	30	80	5	76	43	1	1	53	1.19
12224781--12224837	29	2.0	29	85	0	78	45	1	1	50	1.22
12229096--12229153	28	2.1	28	100	0	116	39	15	13	31	1.86
12229297--12229365	31	2.2	31	82	7	77	37	11	8	42	1.72
12232073--12232114	17	2.4	18	80	15	52	50	2	0	47	1.14
12251904--12251943	14	2.9	14	84	0	53	42	17	7	32	1.77
12254503--12254545	20	2.1	21	86	4	61	62	4	4	27	1.35
12254503--12254559	22	2.8	20	86	5	69	59	3	3	33	1.31
12254984--12255024	20	2.0	20	85	0	55	56	2	9	31	1.45
12254989--12255056	30	2.3	30	94	0	118	60	5	8	25	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12255012--12255054	20	2.2	20	82	0	50	65	4	6	23	1.37
12255972--12256010	11	3.5	11	82	6	51	38	2	2	56	1.27
12259882--12259949	29	2.4	30	81	13	83	36	1	2	58	1.22
12277592--12277616	11	2.3	11	100	0	50	16	16	16	52	1.76
12289645--12289669	13	1.9	13	100	0	50	28	0	0	72	0.86
12290782--12290831	23	2.2	23	85	0	64	54	6	4	36	1.44
12300188--12300212	13	1.9	13	100	0	50	64	4	24	8	1.38
12307505--12307555	25	2.0	25	96	0	93	19	11	21	47	1.81
12310022--12310064	21	2.0	21	82	8	52	69	18	0	11	1.17
12311337--12311370	16	2.1	16	88	0	50	29	0	0	70	0.87
12311314--12311379	25	2.7	26	80	15	79	31	1	1	65	1.11
12311314--12311649	26	13.4	26	70	8	180	28	5	4	61	1.37
12311420--12311637	100	2.1	103	80	9	250	27	5	4	61	1.39
12311464--12311607	50	2.8	50	73	7	146	27	4	3	63	1.31
12311391--12311637	105	2.4	104	80	7	265	27	6	4	61	1.41
12311617--12311679	21	2.9	21	83	7	72	26	1	3	68	1.14
12314400--12314435	16	2.2	16	90	0	54	30	19	2	47	1.64
12316667--12316718	21	2.6	19	82	11	77	36	15	9	38	1.80
12320985--12321080	44	2.2	45	86	3	133	34	9	20	35	1.85
12324212--12324241	15	2.0	15	93	0	51	40	6	10	43	1.64
12324319--12324426	31	3.6	31	72	16	84	34	11	11	43	1.76
12324374--12324439	31	2.2	30	81	10	80	36	16	10	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12324498--12324539	19	2.0	20	86	13	59	71	0	0	28	0.86
12329906--12330929	511	2.0	511	98	0	1958	29	20	17	32	1.95
12350914--12350955	6	7.0	6	81	10	50	61	0	0	38	0.96
12361771--12361837	35	1.9	35	96	0	125	64	7	10	17	1.47
12365731--12365755	6	4.2	6	100	0	50	16	20	32	32	1.94
12367688--12367736	25	1.9	26	87	4	73	12	16	6	65	1.45
12367685--12367739	25	2.3	23	82	14	67	10	18	5	65	1.42
12378473--12378519	21	2.3	21	82	10	53	31	17	4	46	1.67
12392764--12392802	12	3.0	13	85	7	53	51	0	0	48	1.00
12394886--12394922	17	2.1	18	90	5	58	32	0	0	67	0.91
12394904--12394954	21	2.5	22	81	12	72	37	0	0	62	0.95
12398562--12398609	3	16.0	3	91	0	78	64	2	0	33	1.05
12398615--12398643	6	4.8	6	100	0	58	17	0	48	34	1.47
12403489--12403528	17	2.3	17	86	4	53	57	7	0	35	1.27
12404670--12404700	6	5.3	6	96	3	55	48	0	0	51	1.00
12408433--12408496	27	2.4	27	84	5	85	21	28	32	17	1.96
12408540--12408633	4	23.0	4	73	21	56	69	0	27	3	1.04
12408560--12408666	20	5.2	20	74	14	85	68	0	28	2	1.04
12408580--12408670	44	2.0	45	89	6	141	68	0	30	1	0.97
12408539--12408673	24	5.7	23	70	22	82	67	0	30	2	1.03
12408539--12408670	44	2.8	44	83	12	140	67	0	30	2	1.03
12409032--12410128	321	3.4	320	94	1	1903	50	8	11	29	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12412727--12412761	3	11.7	3	87	0	52	62	5	0	31	1.18
12413008--12413068	27	2.3	27	94	0	104	22	36	24	16	1.94
12413323--12413360	15	2.4	17	91	8	62	13	15	2	68	1.32
12416911--12416957	23	2.0	23	100	0	94	27	8	21	42	1.81
12420771--12420815	22	2.0	22	91	0	72	33	2	15	48	1.57
12424541--12424585	22	2.0	22	91	0	72	33	2	15	48	1.57
12427476--12427538	30	2.3	26	86	10	81	42	4	0	52	1.22
12427542--12427571	13	2.4	12	89	10	51	90	10	0	0	0.47
12427692--12427825	4	33.0	4	75	20	77	67	0	32	0	0.91
12427697--12427866	23	7.3	24	70	16	83	68	0	31	0	0.90
12427696--12427824	33	3.9	33	78	15	108	67	0	32	0	0.91
12427749--12427852	56	1.9	54	86	4	145	68	0	31	0	0.90
12427695--12427908	79	2.8	75	79	16	228	67	0	31	0	0.94
12427683--12427886	79	2.6	78	82	14	233	65	0	34	0	0.93
12428627--12428682	27	2.1	27	86	0	76	48	14	28	8	1.74
12433667--12433711	18	2.5	18	88	0	72	15	48	6	28	1.70
12434479--12434517	19	2.2	18	90	9	62	48	17	0	33	1.48
12434523--12434552	12	2.5	12	94	0	51	60	0	6	33	1.23
12435476--12435501	11	2.4	11	100	0	52	53	0	7	38	1.30
12435604--12435651	24	2.0	24	84	8	62	58	0	6	35	1.23
12435665--12435748	39	2.1	40	82	2	98	51	0	10	38	1.37
12435827--12435883	25	2.4	22	78	21	62	52	0	7	40	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12436541--12436567	6	4.5	6	100	0	54	85	0	0	14	0.61
12437166--12437196	3	10.3	3	100	0	62	67	0	0	32	0.91
12437432--12437505	27	2.7	27	82	0	103	16	31	25	27	1.96
12437566--12437632	30	2.3	30	90	7	104	47	0	8	43	1.34
12438287--12438322	17	2.1	18	89	5	56	44	0	0	55	0.99
12444227--12444366	43	3.3	43	77	10	144	30	23	17	28	1.97
12452387--12452428	3	14.3	3	95	5	77	0	30	0	69	0.89
12454869--12454917	13	3.7	13	83	2	53	44	18	2	34	1.61
12464983--12465025	18	2.4	18	88	7	61	46	0	0	53	1.00
12467030--12467094	8	7.9	8	76	6	67	67	12	4	15	1.37
12467286--12467315	13	2.4	13	94	5	53	80	0	0	20	0.72
12470221--12470590	104	3.6	104	85	1	492	27	19	22	30	1.98
12470176--12470591	104	4.0	105	83	3	459	28	18	22	30	1.97
12470598--12470767	69	2.5	68	84	5	216	29	17	22	30	1.97
12471616--12471645	15	2.0	15	100	0	60	66	20	6	6	1.38
12471913--12471947	15	2.4	15	90	4	54	48	0	8	42	1.33
12489202--12489244	22	2.0	22	85	0	59	41	18	25	13	1.88
12490647--12490779	58	2.3	57	83	5	160	42	0	4	51	1.27
12492427--12492466	21	2.0	19	90	9	62	12	10	2	75	1.15
12492427--12492459	11	3.1	11	82	8	50	15	9	3	72	1.21
12492510--12492574	32	2.0	32	85	5	87	18	13	6	61	1.52
12497159--12497193	16	2.1	16	89	10	52	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12502301--12502345	17	2.6	17	89	0	63	48	13	0	37	1.42
12508433--12508478	16	2.8	18	71	21	55	36	2	0	60	1.09
12508411--12508482	22	3.2	22	73	21	53	33	1	2	62	1.18
12513126--12513181	23	2.4	23	85	11	78	39	1	8	50	1.44
12513132--12513181	24	2.2	24	89	7	77	38	2	8	52	1.43
12519374--12519411	12	3.2	12	92	3	60	92	7	0	0	0.40
12530560--12530638	16	4.7	15	72	24	52	26	1	1	70	1.02
12530573--12530628	12	4.6	12	74	12	51	28	1	1	67	1.10
12530553--12530598	23	2.0	22	83	4	56	26	2	2	69	1.11
12530555--12530630	29	2.6	28	81	10	73	27	1	1	69	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211