genome.fa.s14.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  112  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31531157--31531324	44	3.8	44	74	11	130	31	20	22	25	1.98
31530948--31531254	128	2.4	128	83	7	313	32	18	23	25	1.97
31531204--31531351	44	3.3	43	75	8	129	31	22	21	23	1.98
31531379--31531972	50	11.9	50	67	6	288	33	24	18	23	1.97
31531337--31531949	100	6.1	100	88	0	868	33	24	18	23	1.97
31532548--31532581	16	2.1	16	88	0	50	64	5	23	5	1.38
31537938--31537974	19	2.0	19	89	5	58	48	2	0	48	1.15
31547833--31548089	33	7.6	33	68	23	160	34	28	17	19	1.95
31547788--31548187	102	4.0	102	93	2	650	33	29	17	20	1.95
31548211--31548355	51	2.8	51	82	8	195	31	28	17	23	1.97
31550940--31550964	8	3.1	8	100	0	50	76	0	0	24	0.80
31554568--31554659	26	3.3	26	71	21	87	25	10	32	31	1.90
31554556--31554690	58	2.3	58	88	1	200	28	10	31	30	1.90
31554708--31554774	31	2.2	31	83	0	80	23	17	29	28	1.97
31554715--31554780	31	2.1	31	85	0	87	22	15	33	28	1.94
31558960--31559071	51	2.2	52	80	4	138	41	8	19	30	1.80
31560025--31560194	85	2.0	85	94	2	297	20	24	21	34	1.97
31563393--31563431	16	2.2	17	86	13	53	69	0	17	12	1.19
31567417--31567467	23	2.2	23	89	0	75	27	7	21	43	1.80
31583305--31583339	7	5.1	7	96	3	63	0	25	0	74	0.82
31583551--31583589	5	7.8	5	97	0	69	0	35	0	64	0.94
31590443--31590480	20	1.9	20	100	0	76	21	5	28	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31606960--31607065	41	2.6	41	92	0	176	24	20	23	31	1.98
31617171--31617215	20	2.1	22	88	8	67	2	24	0	73	0.95
31617180--31617227	20	2.4	19	80	16	53	2	18	2	77	0.97
31617175--31617230	23	2.5	22	82	2	67	1	19	1	76	0.96
31617772--31617896	63	2.0	63	88	0	187	32	21	20	24	1.98
31619530--31619612	43	1.9	43	92	4	141	33	7	16	42	1.76
31620904--31620980	38	2.0	38	100	0	154	28	15	25	29	1.96
31625078--31625165	42	2.1	41	85	8	115	23	20	29	26	1.99
31626794--31626921	54	2.4	55	80	6	154	23	28	26	21	1.99
31627818--31627917	37	2.8	37	84	6	125	45	29	11	15	1.80
31630858--31630888	12	2.6	12	94	0	53	32	38	29	0	1.57
31631426--31631450	6	4.2	6	100	0	50	84	0	0	16	0.63
31633298--31633360	21	3.2	20	74	24	55	42	19	1	36	1.61
31634448--31634472	10	2.5	10	100	0	50	28	8	0	64	1.22
31634773--31634816	23	1.9	22	82	17	54	36	25	0	38	1.56
31634861--31634949	45	2.0	45	95	0	160	32	24	17	24	1.97
31634960--31635143	51	3.6	50	81	3	226	32	28	16	23	1.96
31634956--31635142	101	1.8	101	90	3	304	32	28	16	22	1.95
31643685--31643723	17	2.3	17	86	0	51	79	2	17	0	0.84
31644703--31644978	147	1.9	147	81	6	335	34	18	14	33	1.90
31656809--31657050	124	2.0	124	91	1	396	29	14	23	31	1.95
31660404--31661374	23	37.4	23	74	19	666	31	0	22	44	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31660420--31661391	28	37.0	28	76	16	734	31	0	22	44	1.59
31660347--31661391	183	5.7	179	84	9	1102	31	1	22	44	1.60
31663537--31663570	15	2.3	15	90	5	52	67	5	0	26	1.13
31663760--31663862	52	2.0	51	83	5	127	33	0	31	33	1.65
31663811--31663881	22	3.2	22	90	7	108	36	1	28	33	1.66
31670073--31670135	23	2.6	25	85	10	94	0	33	19	47	1.49
31670194--31670278	41	2.1	41	97	0	161	8	30	14	47	1.73
31678015--31678046	9	3.4	9	91	8	55	65	0	0	34	0.93
31678017--31678045	10	3.0	10	95	5	51	62	0	0	37	0.96
31679566--31679909	102	3.4	101	84	2	424	28	15	25	29	1.96
31679566--31679899	51	6.6	50	78	7	316	29	15	25	29	1.96
31679561--31679909	153	2.3	153	81	3	411	29	15	25	29	1.96
31683568--31683654	43	2.0	43	88	0	129	25	21	3	49	1.65
31685712--31685745	18	1.9	17	88	5	50	58	20	0	20	1.39
31685961--31686071	55	2.0	55	84	3	143	20	29	25	24	1.99
31688322--31688347	9	2.9	9	100	0	52	11	30	11	46	1.76
31693659--31693705	21	2.2	21	96	0	85	44	21	8	25	1.80
31693659--31693714	21	2.7	21	88	5	69	37	25	8	28	1.86
31703327--31703378	21	2.5	21	80	0	59	28	7	32	30	1.85
31703680--31703718	17	2.2	18	90	4	62	56	2	0	41	1.13
31707660--31707765	11	9.5	11	71	4	52	65	5	5	23	1.36
31708684--31708731	22	2.2	22	88	3	71	66	4	12	16	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31711445--31711497	24	2.2	24	86	6	72	54	0	11	33	1.36
31711438--31711510	26	2.9	25	78	13	78	56	1	9	32	1.40
31713294--31713755	50	9.2	50	67	1	280	25	23	20	30	1.99
31713310--31713807	100	5.0	100	91	1	800	24	23	21	30	1.99
31721880--31721919	20	2.0	20	95	0	71	30	12	25	32	1.92
31725348--31725391	13	3.3	14	81	9	56	50	11	6	31	1.65
31725695--31725743	25	2.0	24	88	4	71	57	4	8	30	1.47
31725745--31725811	25	2.6	25	83	6	82	55	0	10	34	1.34
31729725--31729838	40	2.9	40	82	3	142	33	22	22	21	1.97
31729884--31730076	41	4.9	41	86	3	254	24	19	24	31	1.98
31730472--31730506	7	5.0	7	92	0	61	17	0	54	28	1.43
31730472--31730540	14	4.9	14	83	3	57	27	0	39	33	1.57
31730696--31730750	21	2.6	21	76	2	65	25	0	36	38	1.56
31731382--31731527	76	1.9	78	92	4	251	44	14	9	31	1.77
31731699--31731813	50	2.3	50	86	0	167	23	0	33	42	1.54
31732639--31732682	21	2.0	21	86	8	61	45	38	0	15	1.47
31733548--31733858	43	7.3	43	87	3	414	25	18	30	24	1.98
31733551--31733858	128	2.4	129	85	4	417	25	19	30	24	1.98
31734119--31734158	19	2.1	19	86	9	55	60	12	5	22	1.52
31739016--31739043	3	9.3	3	100	0	56	32	0	0	67	0.91
31750524--31750560	17	2.2	17	100	0	74	45	0	16	37	1.47
31751928--31752099	88	2.0	88	87	2	247	31	25	25	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31754007--31754058	21	2.5	21	96	0	95	36	25	19	19	1.95
31754677--31754707	6	5.2	6	100	0	62	51	0	0	48	1.00
31755004--31755058	26	2.1	26	86	6	76	30	0	9	60	1.28
31756784--31756850	27	2.4	29	90	7	104	44	4	0	50	1.22
31757012--31757068	18	3.1	18	82	12	62	61	0	38	0	0.96
31757043--31757152	10	10.5	10	72	13	53	70	0	30	0	0.88
31757058--31757119	16	3.9	16	74	18	58	69	0	30	0	0.89
31757056--31757157	42	2.4	42	85	4	125	67	0	32	0	0.91
31757098--31757181	27	2.9	31	77	13	81	69	0	30	0	0.89
31757057--31757180	36	3.4	35	76	12	117	69	0	30	0	0.89
31757067--31757157	41	2.2	41	86	5	123	68	0	31	0	0.90
31757917--31757972	27	2.1	27	93	0	94	44	14	32	8	1.76
31762970--31763007	18	2.1	18	95	0	67	13	47	5	34	1.65
31763794--31763861	3	22.7	3	100	0	136	67	32	0	0	0.91
31763920--31763960	21	2.0	21	85	9	57	70	7	0	21	1.11
31763986--31764016	13	2.5	13	94	5	55	0	25	0	74	0.82
31764210--31764280	30	2.5	29	84	13	94	46	0	9	43	1.37
31764210--31764280	27	2.6	27	88	8	99	46	0	9	43	1.37
31768637--31768708	20	3.7	19	81	7	74	55	5	0	38	1.23
31768638--31768714	19	4.1	19	80	14	79	53	5	0	41	1.23
31769048--31769077	15	2.0	15	93	0	51	26	23	13	36	1.92
31772961--31773119	25	6.4	24	80	12	96	32	20	23	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31772961--31773120	50	3.2	49	79	6	146	32	20	24	23	1.98
31773004--31773120	25	4.7	25	90	0	153	35	18	25	20	1.96
31782734--31782758	13	1.9	13	100	0	50	52	0	0	48	1.00
31788352--31788427	28	2.7	28	85	0	107	36	5	9	48	1.58
31793530--31793574	15	3.3	14	81	15	58	33	11	6	48	1.65
31796765--31797090	27	12.0	27	85	4	426	39	18	16	25	1.91
31796760--31797085	81	4.0	81	87	4	469	39	18	16	26	1.91
31811781--31811857	39	2.0	39	100	0	154	32	12	20	33	1.91
31813227--31813417	50	3.7	50	85	4	220	26	21	28	23	1.99
31813289--31813468	50	3.6	49	82	3	175	28	21	28	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211