genome.fa.s14.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  118  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33236859--33236924	6	11.0	6	88	0	78	62	1	21	15	1.41
33237070--33237142	26	2.8	26	87	2	94	41	12	16	30	1.85
33265095--33265127	17	1.9	17	93	0	57	15	6	15	63	1.49
33269346--33269416	35	2.0	35	97	0	133	40	8	2	47	1.48
33274160--33274187	4	7.0	4	100	0	56	25	0	0	75	0.81
33298563--33298658	49	2.0	49	80	0	111	23	13	33	29	1.93
33299887--33299941	25	2.2	25	81	12	60	49	5	1	43	1.36
33304430--33304695	102	2.6	103	89	0	417	18	19	29	31	1.96
33311951--33312032	27	2.8	29	85	12	105	15	20	29	34	1.94
33311907--33312138	102	2.3	103	91	0	367	19	20	28	31	1.97
33314881--33314906	12	2.2	12	100	0	52	73	7	0	19	1.07
33318352--33318393	18	2.3	18	91	0	66	21	40	28	9	1.84
33318872--33318916	12	3.8	12	78	0	54	24	4	4	66	1.29
33318980--33319009	15	1.9	16	93	6	53	13	3	16	66	1.37
33320481--33320518	6	6.2	6	85	14	51	15	0	2	81	0.80
33320491--33320517	14	1.9	14	100	0	54	14	0	3	81	0.82
33340757--33340941	79	2.3	81	83	7	227	24	27	22	24	2.00
33340757--33340941	40	4.7	40	82	7	225	24	27	22	24	2.00
33343655--33343689	15	2.3	15	90	5	52	34	2	5	57	1.37
33358170--33358207	19	2.0	19	94	0	67	31	18	10	39	1.85
33364089--33364114	11	2.4	11	100	0	52	92	7	0	0	0.39
33364538--33364694	42	3.8	41	85	4	192	19	17	27	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33365254--33365284	16	1.9	16	93	0	53	6	12	0	80	0.89
33365498--33365764	145	1.9	143	85	5	369	44	6	8	40	1.60
33365751--33365806	27	2.0	27	89	3	85	44	1	10	42	1.49
33366457--33366525	10	7.1	9	77	22	61	21	4	1	72	1.10
33366473--33366521	16	3.2	15	83	13	57	20	4	2	73	1.10
33382288--33382312	5	5.0	5	100	0	50	60	0	0	40	0.97
33386921--33387330	86	4.8	85	84	3	429	44	12	13	30	1.80
33386922--33387337	172	2.5	168	81	7	475	43	12	12	30	1.80
33387795--33387833	14	2.7	14	96	4	69	48	7	5	38	1.54
33388567--33388607	20	2.0	20	85	9	55	31	4	7	56	1.48
33393991--33394065	28	2.7	28	85	0	96	36	18	10	34	1.86
33394052--33394145	28	3.4	28	82	1	100	31	25	12	29	1.93
33394299--33394449	57	2.6	57	88	1	221	37	27	9	25	1.86
33400545--33400737	51	3.8	52	78	10	202	24	16	27	30	1.97
33402750--33402826	37	2.1	37	97	0	145	32	25	5	36	1.78
33405404--33405528	61	2.0	61	98	0	241	30	19	16	33	1.94
33405897--33405994	28	3.5	28	82	6	94	29	22	14	33	1.93
33405923--33406046	28	4.4	28	83	0	140	27	24	14	33	1.94
33418954--33419015	32	1.9	32	83	0	79	30	11	17	40	1.85
33419239--33419301	28	2.2	28	85	0	81	57	3	1	38	1.24
33419591--33419644	24	2.2	26	83	9	69	27	0	3	68	1.06
33422656--33422731	27	2.9	26	75	14	84	32	6	7	52	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33423357--33423402	22	2.1	22	87	0	65	21	10	6	60	1.52
33423363--33423406	11	4.0	11	85	11	54	22	9	9	59	1.56
33423589--33423625	11	3.5	11	85	7	58	29	0	0	70	0.88
33427551--33427627	26	3.0	26	81	5	68	18	24	32	24	1.97
33427662--33427719	27	2.1	28	87	3	82	24	27	24	24	2.00
33427711--33427771	29	2.1	29	84	0	77	22	27	26	22	1.99
33427879--33427962	14	5.8	14	76	5	51	25	27	26	21	1.99
33427879--33427963	29	2.9	29	82	3	91	25	27	25	21	1.99
33427900--33427963	14	4.5	14	76	3	56	28	28	23	20	1.99
33438118--33438142	10	2.5	10	100	0	50	40	0	0	60	0.97
33439320--33439352	17	1.9	17	93	0	57	36	9	15	39	1.79
33452540--33452566	7	3.9	7	100	0	54	44	40	0	14	1.46
33458589--33458737	50	3.0	49	91	2	226	55	9	7	28	1.59
33462095--33462127	11	3.0	11	86	13	50	18	12	0	69	1.18
33462156--33462214	27	2.2	27	96	0	109	27	23	5	44	1.74
33463471--33463536	21	3.0	22	86	4	80	30	4	30	34	1.78
33464806--33464954	51	3.0	51	92	2	232	55	11	7	26	1.62
33466163--33466188	9	2.9	9	100	0	52	76	11	0	11	1.01
33469034--33469076	12	3.4	12	75	12	50	58	13	13	13	1.64
33469019--33469103	26	3.2	26	93	5	134	55	15	11	17	1.69
33475408--33475465	21	2.8	20	73	5	53	29	10	22	37	1.87
33477638--33477731	42	2.2	42	83	7	111	22	37	23	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33477680--33477743	21	3.0	21	70	17	60	28	37	18	15	1.92
33477655--33477743	42	2.1	42	85	4	117	24	38	20	16	1.93
33478684--33478744	23	2.6	23	81	2	68	42	16	13	27	1.85
33478691--33478751	24	2.6	23	81	2	68	44	16	14	24	1.85
33484640--33484862	40	5.6	40	82	5	256	25	21	27	25	2.00
33484640--33484897	119	2.2	119	81	6	283	25	21	28	24	1.99
33489751--33489783	16	2.0	17	94	5	59	81	0	18	0	0.68
33489751--33489784	12	2.7	13	90	9	61	79	0	20	0	0.73
33493809--33494178	188	2.0	188	91	0	605	23	13	23	39	1.90
33495590--33495683	49	1.9	49	95	0	170	41	7	25	25	1.81
33496466--33496501	14	2.5	15	86	4	56	80	0	5	13	0.88
33496494--33496540	21	2.2	21	77	7	51	68	2	8	21	1.27
33500395--33500519	27	4.6	27	78	11	121	32	10	18	39	1.84
33510401--33510440	19	2.1	19	85	0	53	47	15	2	35	1.58
33516185--33516256	25	2.9	24	79	8	72	29	25	20	25	1.99
33516213--33516266	25	2.2	25	83	12	67	31	24	20	24	1.98
33522486--33522525	21	1.9	21	84	0	53	37	2	5	55	1.35
33529936--33529975	20	2.0	20	95	0	71	10	30	17	42	1.82
33529940--33529984	20	2.2	20	84	0	54	13	35	13	37	1.84
33537090--33537146	20	2.9	18	76	12	51	19	3	7	70	1.26
33544060--33544118	28	2.1	28	83	0	73	25	25	25	23	2.00
33544222--33544292	26	2.7	26	80	4	81	32	25	25	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33544467--33544554	27	3.3	27	87	6	124	15	14	21	47	1.82
33545604--33545641	13	3.0	13	84	7	51	63	0	28	7	1.23
33551040--33551107	26	2.6	26	76	4	75	35	20	22	22	1.96
33551273--33551332	27	2.2	28	78	3	68	21	18	20	40	1.92
33551286--33551402	27	4.3	26	80	11	128	17	17	17	47	1.82
33551286--33551390	54	1.9	54	86	7	151	16	17	19	47	1.83
33551286--33551402	54	2.2	54	84	6	148	17	17	17	47	1.82
33557868--33557916	22	2.2	23	82	10	66	42	18	6	32	1.75
33569302--33569678	126	3.0	123	86	5	524	30	15	21	32	1.94
33572875--33573273	23	16.9	23	73	20	317	29	0	26	44	1.57
33572880--33573269	96	4.1	94	80	14	340	28	0	26	44	1.57
33572977--33573062	22	3.9	21	82	10	109	25	0	29	45	1.54
33572948--33573217	51	5.5	51	85	10	377	28	0	27	44	1.58
33572976--33573273	45	6.3	45	86	7	357	28	0	27	43	1.58
33573037--33573178	29	5.3	28	70	29	114	27	0	29	42	1.56
33572930--33573269	147	2.4	144	88	6	510	28	0	26	44	1.57
33574457--33574481	7	3.6	7	100	0	50	60	12	0	28	1.32
33575643--33575716	22	3.4	22	87	9	98	43	0	32	24	1.55
33575659--33575715	10	5.2	11	77	14	64	45	0	33	21	1.52
33576913--33576983	26	2.7	26	93	0	124	23	23	22	29	1.99
33579365--33579444	42	1.9	42	89	0	124	33	13	17	35	1.89
33582904--33582979	26	2.9	26	94	0	125	28	17	11	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33583228--33583260	10	3.3	10	87	12	50	21	24	0	54	1.45
33585599--33586093	257	1.9	257	89	0	756	25	20	13	40	1.90
33592294--33592352	22	2.7	22	79	7	57	38	18	5	37	1.73
33593639--33593669	11	2.7	11	95	5	53	9	51	9	29	1.66
33606533--33606564	16	1.9	16	93	6	55	46	3	0	50	1.17
33608237--33608268	15	2.1	15	94	0	55	75	9	0	15	1.05
33610085--33610144	20	3.0	20	78	9	77	36	18	30	15	1.91
33613706--33613823	45	2.6	45	86	0	155	17	19	18	44	1.88
33618644--33618701	21	2.5	25	76	15	63	55	12	1	31	1.47
33618871--33618918	20	2.4	20	75	0	51	31	18	8	41	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211