genome.fa.s14.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  35  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9341521--9341547	14	1.9	14	100	0	54	40	14	7	37	1.74
9346338--9346867	178	3.0	177	93	1	925	43	15	14	26	1.85
9349823--9349890	21	3.3	21	87	4	104	41	17	27	13	1.87
9351648--9351726	39	2.0	40	97	2	151	58	5	16	20	1.57
9352514--9352622	44	2.5	44	85	2	132	25	17	27	29	1.97
9354207--9354249	17	2.5	17	81	7	52	48	2	4	44	1.36
9357677--9357713	17	2.2	17	90	0	56	45	0	5	48	1.25
9360417--9360582	39	4.3	39	88	0	242	29	4	20	45	1.72
9361965--9362009	22	2.0	22	83	8	56	51	17	0	31	1.46
9362177--9362225	22	2.2	22	96	0	89	30	24	16	28	1.96
9366951--9366976	6	4.3	6	100	0	52	19	15	30	34	1.93
9370652--9370680	3	9.7	3	100	0	58	68	0	31	0	0.89
9374352--9374480	28	4.6	28	76	3	134	38	16	22	22	1.92
9374352--9374480	56	2.3	56	81	2	152	38	16	22	22	1.92
9376219--9376342	34	3.6	34	87	0	158	44	14	7	33	1.73
9394392--9394439	24	2.0	24	84	11	64	66	2	2	29	1.14
9404689--9404744	17	3.3	17	80	7	69	41	1	1	55	1.21
9405660--9405704	21	2.1	21	84	12	56	20	0	4	75	0.97
9406468--9406506	3	13.3	3	94	5	71	30	0	0	69	0.89
9406683--9406707	9	2.8	9	100	0	50	8	8	0	84	0.79
9414417--9414489	27	2.7	26	77	12	76	56	1	1	41	1.16
9414417--9414498	26	3.1	25	73	23	69	57	1	1	40	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9414478--9414550	31	2.4	32	84	11	91	54	1	4	39	1.28
9415124--9415157	16	2.1	17	94	5	61	14	5	17	61	1.52
9419490--9419537	16	2.9	16	84	3	60	16	6	16	60	1.55
9423426--9423469	22	1.9	24	86	9	65	56	2	0	40	1.11
9423473--9423525	19	2.5	20	80	17	54	47	1	7	43	1.42
9428034--9428099	9	7.6	9	81	10	66	48	18	0	33	1.48
9428215--9428239	7	3.6	7	100	0	50	32	12	16	40	1.84
9432319--9432399	26	2.7	31	81	12	91	30	27	20	20	1.98
9432178--9432504	101	3.2	102	93	1	557	31	27	18	22	1.97
9432420--9432501	27	2.8	27	87	10	101	31	29	21	17	1.96
9447377--9447414	20	1.9	19	85	15	51	47	0	0	52	1.00
9463382--9463420	20	2.0	20	94	0	69	30	5	2	61	1.31
9463436--9463475	11	3.5	11	83	6	53	37	2	0	60	1.11
9466042--9466072	9	3.4	9	90	0	53	41	22	9	25	1.84
9466175--9466218	18	2.4	18	88	0	61	13	2	43	40	1.57
9471356--9471405	24	2.0	24	84	11	64	42	6	0	52	1.26
9474938--9474962	13	1.9	13	100	0	50	8	0	4	88	0.64
9489733--9489764	9	3.6	9	100	0	64	12	0	9	78	0.97
9489842--9489890	23	2.1	23	100	0	98	34	14	12	38	1.83
9491716--9491742	7	3.9	7	100	0	54	59	11	0	29	1.32
9494335--9494380	20	2.3	20	89	10	69	43	13	0	43	1.43
9495957--9496243	51	5.7	50	71	9	149	26	16	27	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9495957--9496298	102	3.4	101	81	7	367	27	16	27	29	1.97
9496114--9496292	50	3.6	49	86	8	238	28	14	27	29	1.95
9501480--9501528	24	2.0	25	84	7	66	67	0	0	32	0.91
9501723--9501766	22	2.0	22	100	0	88	27	18	13	40	1.88
9505208--9505330	60	2.0	60	100	0	246	37	16	17	28	1.92
9520415--9520469	17	2.9	19	73	15	51	36	0	5	58	1.21
9520582--9520630	21	2.3	21	82	6	64	30	32	8	28	1.86
9520964--9521000	16	2.2	17	86	13	51	54	0	2	43	1.14
9520983--9521223	47	5.3	46	70	19	164	46	3	3	46	1.35
9521042--9521193	44	3.4	43	72	18	139	48	2	1	46	1.27
9521017--9521223	91	2.3	91	94	0	360	45	3	3	47	1.36
9523031--9523064	17	2.0	17	88	0	50	76	8	2	11	1.12
9524788--9525075	87	3.3	87	76	7	348	25	23	21	29	1.99
9524828--9525246	89	4.8	87	72	11	254	25	22	21	31	1.98
9524734--9525246	176	3.0	173	83	7	614	26	23	19	30	1.98
9524828--9525370	44	12.7	42	70	13	301	25	22	20	31	1.98
9525089--9525375	124	2.3	124	98	0	547	27	20	19	32	1.97
9526707--9526732	1	26.0	1	100	0	52	0	0	0	100	0.00
9543503--9543551	21	2.5	19	83	9	55	8	2	44	44	1.45
9543516--9543551	16	2.1	17	90	10	56	5	0	44	50	1.25
9545740--9546114	44	8.7	43	70	7	161	26	23	19	30	1.98
9545779--9545893	43	2.7	43	80	10	128	23	23	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9545707--9546188	174	2.8	172	83	8	590	26	23	20	30	1.98
9546099--9546265	39	4.2	39	66	15	115	28	20	19	31	1.97
9546036--9546317	122	2.3	123	93	4	489	27	20	19	32	1.97
9558401--9558434	17	2.0	17	88	0	50	76	8	2	11	1.12
9573423--9573463	22	1.9	22	90	5	66	48	26	0	24	1.51
9576924--9576996	33	2.2	33	95	2	130	27	21	6	43	1.78
9580331--9580391	32	1.9	32	83	12	81	44	4	1	49	1.33
9583343--9583395	6	9.3	6	82	10	51	77	0	3	18	0.92
9588446--9588485	20	2.1	19	86	9	55	15	32	17	35	1.91
9590837--9590878	21	2.0	21	95	0	75	30	28	11	28	1.92
9609599--9609796	95	2.1	95	92	0	324	52	9	9	28	1.65
9610763--9610791	12	2.3	13	94	5	51	0	0	10	89	0.48
9621972--9622002	16	1.9	16	93	0	53	38	9	12	38	1.77
9622760--9622787	6	4.7	6	100	0	56	17	0	64	17	1.30
9631862--9631901	20	2.0	20	90	0	62	42	7	0	50	1.30
9639070--9639129	25	2.6	22	73	19	59	63	5	1	30	1.25
9639236--9639263	14	2.0	14	100	0	56	57	14	7	21	1.61
9640704--9640773	28	2.5	28	83	0	86	27	12	20	40	1.88
9648307--9648331	10	2.5	10	100	0	50	32	24	24	20	1.98
9649891--9649971	41	2.0	41	82	4	101	19	19	30	29	1.97
9653317--9653351	14	2.5	14	90	0	52	68	11	5	14	1.37
9654961--9655040	17	4.4	18	73	14	67	51	3	0	45	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9654970--9655047	20	4.1	19	69	12	54	51	3	0	44	1.19
9659587--9659628	20	2.1	21	86	8	61	33	4	4	57	1.41
9665139--9665187	19	2.5	20	83	12	66	38	0	6	55	1.25
9681466--9681608	48	3.0	48	90	0	223	42	18	4	34	1.70
9683084--9683121	14	2.8	13	92	8	58	34	18	7	39	1.80
9687672--9687709	6	6.3	6	100	0	76	50	15	0	34	1.45
9692793--9692831	20	2.0	20	89	0	60	28	15	28	28	1.96
9695378--9695503	66	1.9	67	90	1	200	21	26	7	45	1.77
9697377--9697487	6	18.5	6	100	0	222	33	0	17	49	1.47
9700879--9700921	18	2.4	18	80	7	52	41	6	0	51	1.29
9701191--9701219	15	1.9	15	100	0	58	37	13	13	34	1.85
9701289--9701322	13	2.6	13	90	0	50	26	0	5	67	1.13
9701664--9701720	26	2.2	25	85	11	80	33	15	12	38	1.85
9701925--9702006	42	2.0	42	82	2	103	62	0	1	36	1.03
9705034--9706364	228	5.8	228	85	2	1368	29	23	24	22	1.99
9705109--9706367	684	1.8	684	82	2	1612	29	23	24	22	1.99
9707318--9707375	26	2.2	26	84	6	73	39	17	17	25	1.91
9708465--9708502	17	2.2	18	85	4	51	21	5	0	73	1.02
9711243--9711387	41	3.6	41	82	0	166	28	20	27	24	1.99
9718995--9719139	41	3.6	41	83	0	175	28	20	27	23	1.99
9720276--9720365	45	2.0	45	97	0	171	21	25	15	37	1.92
9725776--9726662	228	3.9	228	87	1	1161	30	25	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9725776--9726902	456	2.5	455	83	3	1284	29	24	23	23	1.99
9725776--9726902	228	4.9	227	83	2	1120	29	24	23	23	1.99
9727010--9727097	43	2.0	43	97	0	167	25	4	19	51	1.66
9728772--9728803	9	3.7	9	95	4	57	12	21	21	43	1.86
9730149--9730207	30	2.0	30	96	0	109	55	15	3	25	1.55
9732715--9732765	3	17.0	3	83	0	66	33	1	5	58	1.33
9732715--9732765	18	2.8	18	90	0	75	33	1	5	58	1.33
9737473--9737502	14	2.1	14	93	0	51	30	16	20	33	1.94
9737553--9737580	9	3.1	9	100	0	56	46	10	10	32	1.73
9739680--9739716	19	1.9	19	89	10	58	27	37	2	32	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211