genome.fa.s14.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  135  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39756559--39757080	200	2.6	201	89	1	780	42	18	2	36	1.63
39759927--39760058	28	4.8	28	89	0	203	28	25	22	23	1.99
39760169--39760269	26	3.9	26	90	0	157	35	24	21	17	1.95
39760439--39760724	27	10.3	27	79	4	257	21	18	19	40	1.91
39760512--39760722	114	1.9	114	83	4	282	20	18	19	41	1.90
39777970--39778154	79	2.3	81	84	7	236	24	22	27	25	2.00
39777971--39778154	40	4.6	40	82	9	207	24	22	27	25	2.00
39778023--39778187	79	2.1	79	83	6	201	26	20	27	26	1.99
39785835--39785881	23	1.9	26	83	12	64	29	4	21	44	1.71
39790953--39791129	27	6.6	27	82	2	194	27	14	28	29	1.95
39790953--39791129	54	3.3	55	83	4	216	27	14	28	29	1.95
39790954--39791108	81	1.9	81	86	2	222	27	14	29	29	1.95
39790950--39791129	81	2.2	81	82	2	218	27	15	28	29	1.96
39802107--39802201	28	3.4	28	80	0	109	31	25	22	21	1.98
39802307--39802382	26	2.9	26	86	0	89	35	22	23	18	1.96
39802562--39802636	27	2.8	27	87	0	105	14	20	22	42	1.88
39802648--39802698	23	2.2	23	89	0	75	43	21	5	29	1.76
39805668--39805784	56	2.2	54	85	8	152	28	17	27	27	1.97
39812941--39812990	25	2.0	25	85	14	68	24	6	0	70	1.10
39812944--39812995	6	8.3	6	78	16	52	21	3	0	75	0.97
39815406--39815875	50	9.4	50	84	1	568	25	21	30	22	1.98
39817352--39817402	23	2.2	23	89	0	75	43	21	5	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39822878--39822912	16	2.1	17	89	5	54	31	40	0	28	1.57
39847696--39847724	12	2.3	13	94	5	51	20	6	6	65	1.40
39856775--39856818	22	2.0	21	83	12	54	40	0	0	59	0.98
39861113--39861289	50	3.4	51	82	6	205	22	28	20	28	1.99
39896090--39896335	50	4.8	50	81	4	235	27	20	28	23	1.99
39897839--39897955	32	3.7	32	88	2	164	17	19	25	36	1.94
39897839--39898019	32	5.7	31	83	2	157	17	20	24	37	1.94
39910045--39910229	29	6.4	29	76	5	106	38	11	24	25	1.89
39910102--39910244	58	2.5	58	78	4	146	39	13	23	23	1.90
39917391--39917575	51	3.6	51	77	5	178	23	17	28	31	1.97
39917391--39917583	102	1.9	101	88	5	291	23	17	28	30	1.97
39922148--39922393	39	6.2	40	79	6	250	18	32	16	32	1.93
39922239--39922434	20	9.9	20	63	15	77	16	32	17	33	1.93
39922149--39922434	40	7.2	40	78	4	269	17	32	17	32	1.94
39922148--39922393	79	3.1	79	89	1	350	18	32	16	32	1.93
39922148--39922434	79	3.6	79	84	4	337	18	32	17	32	1.94
39927978--39928008	13	2.5	13	94	5	55	25	0	12	61	1.32
39944999--39945170	50	3.4	50	80	3	193	25	23	28	22	1.99
39945616--39945682	34	2.0	34	96	0	125	25	16	31	26	1.96
39947071--39947346	50	5.6	49	80	4	277	21	28	21	27	1.99
39951654--39952223	50	11.4	50	88	0	798	22	32	20	24	1.98
39951590--39952223	100	6.3	100	85	1	808	22	31	20	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39951590--39952222	150	4.2	150	86	1	824	22	31	20	25	1.98
39954701--39954725	8	3.1	8	100	0	50	76	0	0	24	0.80
39961233--39961428	50	3.8	53	82	9	194	27	19	30	22	1.98
39961291--39961464	50	3.5	50	86	1	233	28	21	29	20	1.98
39961731--39961769	12	3.2	12	85	0	51	51	5	23	20	1.67
39968021--39968744	362	2.0	362	98	0	1394	36	8	19	35	1.82
39972701--39972832	37	3.6	37	76	2	104	38	31	15	14	1.87
39974696--39974726	16	1.9	16	100	0	62	38	0	0	61	0.96
39974717--39974828	59	1.9	59	85	10	158	53	0	0	44	1.12
39974741--39974818	21	3.9	20	72	23	58	51	1	0	47	1.09
39978053--39978300	60	4.2	60	79	0	210	35	19	29	14	1.92
39978052--39978319	120	2.2	119	78	4	272	36	19	30	13	1.91
39982171--39982200	16	1.9	16	93	6	53	50	20	0	30	1.49
39983094--39983154	30	2.1	29	81	9	70	32	24	3	39	1.72
39983335--39983389	25	2.2	26	81	15	71	27	18	27	27	1.98
39983351--39983411	25	2.5	24	81	7	61	27	22	26	22	1.99
39985770--39985832	27	2.3	27	94	5	110	49	20	14	15	1.80
39986069--39986369	27	11.1	27	77	4	257	35	20	19	24	1.96
39986070--39986385	81	3.9	81	81	3	327	35	20	19	24	1.96
39986429--39986487	24	2.5	24	86	5	84	22	10	22	45	1.81
39986589--39986659	26	2.7	26	91	0	115	14	23	26	35	1.93
39986577--39986668	26	3.5	26	80	2	87	17	23	25	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39986658--39986900	32	7.6	32	77	4	170	20	20	22	37	1.94
39986689--39986893	96	2.1	96	81	3	234	20	18	22	38	1.93
39986975--39987027	26	2.0	26	88	0	79	18	28	20	32	1.97
39990261--39990311	24	2.0	27	88	11	81	52	13	0	33	1.41
40003029--40003174	74	2.0	75	90	2	233	44	9	15	30	1.78
40003152--40003422	138	2.0	138	88	4	413	40	8	5	44	1.59
40003487--40003535	25	2.0	25	100	0	98	44	8	2	44	1.45
40007339--40007379	18	2.3	18	100	0	82	19	12	17	51	1.76
40007719--40007748	15	2.0	15	100	0	60	33	26	6	33	1.83
40013433--40013501	20	3.4	20	93	2	111	46	5	7	40	1.55
40013540--40013823	138	2.1	138	93	1	489	40	7	6	46	1.57
40020283--40020324	22	1.9	22	100	0	84	28	19	23	28	1.98
40021789--40021814	13	2.0	13	100	0	52	15	15	30	38	1.88
40028310--40028427	43	2.8	43	78	10	118	35	24	16	22	1.95
40028458--40028608	41	3.7	41	83	2	169	23	22	17	35	1.95
40028458--40028605	40	3.6	40	83	3	161	24	22	18	35	1.96
40035731--40035876	43	3.5	42	78	8	145	36	25	16	21	1.94
40035883--40036029	41	3.6	41	87	0	213	25	23	16	34	1.95
40036860--40036890	12	2.6	12	100	0	62	19	0	6	74	1.03
40038249--40038289	19	2.2	19	100	0	82	65	19	0	14	1.26
40054613--40054668	29	1.9	29	96	0	103	14	26	16	42	1.86
40054537--40054733	30	6.6	30	73	6	114	23	23	13	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40054536--40054814	120	2.3	119	87	3	382	21	25	14	38	1.91
40054717--40054788	28	2.4	29	81	9	83	20	26	9	43	1.83
40056891--40056969	37	2.1	37	88	4	115	25	30	18	25	1.98
40057088--40057534	47	9.5	47	92	0	696	29	29	8	32	1.87
40057088--40057534	190	2.4	188	92	0	732	29	29	8	32	1.87
40062845--40062937	37	2.5	35	81	15	98	41	3	4	50	1.38
40067949--40067990	21	2.0	21	85	4	57	40	19	14	26	1.89
40070115--40070339	40	5.7	40	81	6	215	25	28	21	25	1.99
40070271--40070348	40	1.9	41	82	10	97	26	28	20	24	1.99
40077538--40077761	78	2.8	78	79	4	236	25	28	20	25	1.99
40077538--40077760	39	5.7	38	79	10	173	26	27	21	25	1.99
40077692--40077769	40	1.9	41	82	10	97	26	28	20	24	1.99
40081309--40081460	75	2.0	75	90	0	241	22	23	19	34	1.96
40086628--40086842	91	2.4	91	85	0	295	32	15	16	35	1.90
40086650--40086798	46	3.3	46	69	9	124	32	14	15	37	1.88
40090758--40090803	21	2.1	21	88	4	65	43	8	2	45	1.47
40090844--40090884	20	2.0	20	85	0	55	41	17	21	19	1.90
40092384--40092429	21	2.1	22	88	4	67	43	0	10	45	1.39
40101719--40101794	38	2.0	38	89	0	116	15	18	13	52	1.74
40106721--40107078	27	13.3	27	79	9	331	41	18	18	21	1.90
40106720--40107078	81	4.4	81	80	6	379	41	18	18	21	1.90
40107550--40107619	33	2.2	32	82	5	79	28	21	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40129117--40129145	14	2.0	15	93	6	51	48	20	0	31	1.50
40133142--40133185	22	2.0	23	86	4	63	56	11	20	11	1.64
40135725--40135749	13	1.9	13	100	0	50	64	0	20	16	1.30
40148055--40148108	25	2.2	25	82	0	63	40	16	20	22	1.91
40148067--40148114	25	1.9	25	91	0	78	35	20	20	22	1.96
40149087--40149293	50	4.1	50	85	2	272	20	30	21	27	1.98
40149087--40149293	100	2.1	100	88	1	308	20	30	21	27	1.98
40156898--40157079	91	2.0	91	87	0	265	20	18	26	34	1.96
40161778--40161838	30	2.0	30	83	0	77	32	26	14	26	1.95
40161799--40161837	10	3.9	10	86	6	53	35	28	12	23	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211