genome.fa.s14.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  163  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48007160--48007198	15	2.6	15	79	0	51	61	2	2	33	1.23
48007016--48007243	127	1.8	125	81	9	284	41	2	7	48	1.45
48011865--48011913	3	16.3	3	100	0	98	67	0	32	0	0.91
48025375--48025401	5	5.4	5	100	0	54	40	0	0	59	0.98
48025739--48025802	29	2.2	30	81	13	71	67	3	6	23	1.28
48034286--48034458	43	4.0	43	80	0	202	28	19	15	37	1.91
48034286--48034481	86	2.3	86	83	4	243	28	19	14	37	1.91
48037891--48037984	38	2.6	36	78	10	100	28	15	24	30	1.96
48044039--48044215	94	1.9	94	79	2	203	24	17	31	27	1.97
48046416--48046620	68	3.0	67	67	20	163	29	25	19	25	1.98
48046402--48047091	137	5.1	137	78	2	656	30	26	19	24	1.98
48046806--48047015	68	3.1	67	67	14	158	29	26	19	24	1.98
48046402--48047091	274	2.5	269	81	4	778	30	26	19	24	1.98
48049787--48049819	13	2.6	13	95	4	59	33	0	0	66	0.92
48050386--48050411	11	2.4	11	100	0	52	38	15	0	46	1.46
48050517--48050567	23	2.1	26	82	10	63	31	5	5	56	1.47
48055920--48055972	19	2.8	20	77	8	65	20	18	28	32	1.97
48066381--48066425	23	2.0	23	91	4	74	37	4	17	40	1.70
48066391--48066435	23	2.0	23	86	4	65	33	4	15	46	1.66
48067117--48067159	23	1.9	22	90	4	68	37	6	2	53	1.41
48067097--48067156	28	2.3	27	85	8	79	33	8	1	56	1.39
48067338--48067370	3	11.0	3	100	0	66	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48067369--48067394	3	8.7	3	100	0	52	0	0	30	69	0.89
48072936--48072981	22	2.2	22	84	7	60	43	0	0	56	0.99
48078246--48078292	21	2.2	22	92	3	78	21	19	38	21	1.94
48079539--48079567	14	2.0	15	93	6	51	55	0	44	0	0.99
48079836--48079875	3	13.3	3	100	0	80	67	0	0	32	0.91
48093121--48093168	23	2.3	19	79	13	51	29	4	0	66	1.10
48095876--48095931	29	2.0	29	83	16	75	44	23	0	32	1.53
48096355--48096384	12	2.5	12	94	0	51	40	0	0	60	0.97
48103204--48103240	13	2.7	14	83	8	58	70	2	0	27	1.01
48108806--48108839	9	3.8	9	96	0	59	70	11	0	17	1.16
48108808--48108849	18	2.3	18	84	8	50	71	11	2	14	1.24
48113604--48113674	37	1.9	37	94	0	124	38	1	21	39	1.62
48114803--48114860	27	2.2	27	78	3	64	27	0	24	48	1.51
48115984--48116025	13	3.2	13	82	0	57	30	16	21	30	1.95
48115984--48116032	13	3.8	13	80	0	53	30	16	20	32	1.94
48116812--48116903	40	2.3	40	84	3	114	22	27	11	38	1.89
48120051--48120097	13	3.6	13	85	0	67	21	12	27	38	1.90
48123646--48123704	31	1.9	31	96	0	109	55	28	3	11	1.52
48125408--48125459	23	2.3	22	84	15	63	38	1	0	59	1.08
48126200--48126269	35	2.0	35	86	10	99	42	1	4	51	1.30
48128339--48128363	13	1.9	13	100	0	50	16	36	8	40	1.77
48128441--48128502	24	2.6	23	78	12	63	43	6	3	46	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48129468--48129509	16	2.7	16	85	3	59	66	0	0	33	0.92
48131276--48131336	32	1.9	32	90	6	97	42	0	14	42	1.46
48131997--48132074	27	2.9	27	80	3	86	20	23	32	24	1.98
48139504--48139558	27	2.0	27	100	0	110	43	7	5	43	1.55
48139911--48140001	30	3.0	30	93	1	146	34	1	45	19	1.58
48141274--48141362	19	4.4	19	80	13	106	55	13	0	31	1.39
48141200--48141362	49	3.6	46	74	12	142	53	14	0	31	1.45
48141280--48141361	21	4.0	21	88	7	132	56	13	0	30	1.38
48141280--48141366	40	2.2	41	91	4	142	55	13	0	31	1.39
48141619--48141657	19	2.1	19	95	0	69	0	46	10	43	1.37
48144783--48144821	15	2.6	16	84	12	55	43	0	0	56	0.99
48144969--48145059	45	2.0	44	85	6	121	34	27	5	32	1.80
48145038--48145075	16	2.4	16	90	0	58	34	34	0	31	1.58
48145244--48145282	14	2.6	15	84	12	53	0	35	0	64	0.94
48145402--48145462	27	2.3	27	91	0	95	16	34	21	27	1.95
48145518--48145565	20	2.5	20	93	3	80	52	0	0	47	1.00
48147057--48147130	38	1.9	39	94	2	132	52	25	2	18	1.59
48147334--48147364	9	3.4	9	95	0	53	25	9	25	38	1.86
48147877--48147938	2	30.5	2	96	3	115	0	48	1	50	1.10
48151322--48151380	25	2.3	26	80	14	68	27	25	30	16	1.97
48151436--48151491	25	2.3	24	78	3	58	37	25	19	17	1.94
48151451--48151569	25	4.8	25	70	11	75	38	21	18	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48151523--48151596	26	2.8	26	79	4	69	40	21	18	18	1.91
48151547--48151606	26	2.3	26	82	5	68	36	21	23	18	1.95
48160887--48160924	19	2.0	19	94	0	67	23	10	18	47	1.79
48160891--48160933	19	2.3	19	87	0	59	27	9	18	44	1.80
48185058--48185150	24	3.9	24	76	5	80	48	24	4	22	1.69
48185187--48185410	27	8.3	27	77	0	162	24	18	19	37	1.93
48185324--48185709	54	7.1	53	81	6	325	23	16	19	40	1.91
48185184--48185410	81	2.8	81	79	2	224	24	18	19	37	1.93
48185378--48185709	27	12.3	27	79	0	324	23	15	20	40	1.91
48185255--48185709	81	5.6	79	73	10	251	23	16	20	39	1.92
48185324--48185685	108	3.4	106	79	6	381	23	16	19	40	1.91
48185895--48185928	17	1.9	17	88	5	50	23	44	23	8	1.81
48188300--48188325	13	2.0	13	100	0	52	46	0	7	46	1.31
48188765--48188820	28	1.9	29	82	7	69	75	1	7	16	1.11
48213274--48213325	22	2.4	22	76	0	59	32	28	17	21	1.96
48216969--48217131	87	1.9	86	85	1	227	28	13	20	36	1.91
48218809--48218853	11	3.5	13	79	14	58	31	0	0	68	0.89
48225764--48225821	19	3.1	20	73	11	61	32	6	18	41	1.78
48227861--48227996	71	1.9	71	90	0	218	36	27	7	29	1.84
48235750--48235804	18	3.1	18	81	0	65	36	32	20	10	1.87
48238603--48238666	33	1.9	34	87	9	96	37	18	0	43	1.51
48240256--48240401	43	3.4	43	81	5	161	30	23	16	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48247539--48247696	85	1.9	85	81	2	192	30	22	16	31	1.96
48248093--48248126	9	3.7	9	96	4	59	64	23	0	11	1.26
48252926--48252959	17	2.0	17	88	0	50	20	0	5	73	1.04
48255807--48255832	8	3.2	8	100	0	52	76	0	0	23	0.78
48257586--48257614	13	2.1	14	93	6	51	20	0	3	75	0.94
48266613--48266679	32	2.1	32	91	0	107	31	1	14	52	1.51
48268265--48268334	34	2.1	34	88	0	104	18	15	32	32	1.93
48288837--48288862	3	8.7	3	100	0	52	34	0	0	65	0.93
48290045--48290089	18	2.5	18	81	0	54	40	20	4	35	1.72
48296226--48296265	18	2.2	18	86	0	53	35	20	2	42	1.65
48302744--48302780	12	2.9	13	88	8	58	29	0	10	59	1.31
48306379--48306476	45	2.2	46	83	3	119	29	19	8	42	1.80
48307075--48307110	17	2.1	17	100	0	72	36	5	0	58	1.22
48309425--48309565	50	2.8	50	84	0	183	26	21	30	21	1.98
48313746--48313834	42	2.1	42	91	0	142	34	26	13	24	1.93
48318303--48318361	31	1.9	31	85	0	82	33	13	11	40	1.81
48319597--48319639	21	2.1	20	86	4	59	34	16	0	48	1.46
48328962--48328995	16	2.1	16	100	0	68	32	5	8	52	1.56
48331339--48331573	128	1.8	128	91	1	391	34	11	16	37	1.85
48336837--48337019	101	1.8	101	88	5	280	21	15	30	32	1.95
48336837--48337025	51	3.8	49	81	4	200	22	15	30	31	1.95
48353795--48353852	28	2.1	28	100	0	116	44	13	10	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48354941--48355013	26	2.8	25	83	6	92	43	6	15	34	1.73
48368205--48368267	11	5.8	10	75	15	54	41	46	3	9	1.52
48368204--48368257	22	2.5	22	84	0	72	42	42	3	11	1.58
48373252--48373386	37	3.7	37	89	3	184	37	32	13	16	1.87
48380520--48380550	9	3.4	9	90	0	53	25	12	22	38	1.90
48380603--48380640	9	4.2	9	89	0	58	44	15	10	28	1.80
48380854--48380911	30	1.9	30	82	0	71	20	34	0	44	1.52
48389698--48389786	44	2.0	44	100	0	178	32	4	13	49	1.62
48398938--48398998	30	2.1	29	84	3	77	16	3	13	67	1.36
48403618--48404520	44	19.9	44	68	14	245	31	18	21	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211